Lnic036938.1
Basic Information
- Insect
- Luperina nickerlii
- Gene Symbol
- -
- Assembly
- GCA_963855955.1
- Location
- OY979691.1:2293623-2315826[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.1e-05 0.0023 19.5 2.1 1 23 21 43 21 43 0.98 2 11 0.0048 0.54 12.0 7.0 1 23 49 72 49 72 0.97 3 11 0.00013 0.015 17.0 8.3 1 23 78 100 78 100 0.98 4 11 7.1e-06 0.00078 21.0 0.9 1 23 106 128 106 128 0.98 5 11 3e-05 0.0033 19.0 2.8 1 23 134 156 134 156 0.98 6 11 2.3e-05 0.0026 19.3 0.5 1 23 163 186 163 186 0.91 7 11 1.9e-06 0.00021 22.7 0.6 1 23 194 217 194 217 0.96 8 11 0.00012 0.013 17.1 0.6 2 23 224 244 223 244 0.97 9 11 1e-05 0.0011 20.5 0.8 1 23 250 274 250 274 0.92 10 11 0.00045 0.05 15.3 1.6 1 21 280 300 280 301 0.95 11 11 4.3 4.7e+02 2.8 0.4 2 8 306 312 305 313 0.88
Sequence Information
- Coding Sequence
- ATGAAGGAGAAAGCTAAAAAGAAGGGTGCCAAGTCTAAACCTAATcgaaaattatttgtttattcatGTCCACATTGTCGTAAGAACTTCGACAACTCCTCAAACTGGCTCAGCCACGTCAAGCTCCATTCAACCGAGGAGCCGTACCACTGCGACATGTGTGACTACAAGTGTAAGGTCCAGAAGTACCTCACGCGTCACGTGAAGAAGACACACACCAAGCCAACCGGCCATCAGTGTCCTGTGTGCGGGAAGTGCTTCCATTTTGATTGTAACCTGCGCGATCACATGAGAGTGCACACTGGTGAAAAGCCGTTTAAATGCAATGTGTGCGACAAGGCGTTCAATTCTCGCTACTCTCTTAGCGGACACAAGATGATACATACTgGAGAGAAGCCATATCAATGCCAGTACTGTGACTACGCTTGTCGAGACAACTCGACGATAAGACGGCACATAGAGAGACATCTTGGAATATCGAAGGACTATCCGTGTTCTATATGTAAAAAGAACTTCAAAAAGAAGGAGACGTTGCAAATCCACGTGGATGAGGTACATTTTGAGCTGGATACAAGGAAGCATCCCTGTGCACAGTGTGATAAAGTGTTCAAGACTAAAGGGACACTCACTATACATGTTAACACAGTCCACAAGAAAACAAATCGTATCAAATGTGAGATCTGCGGCCGTCTGTCTACTAAGAACAACTTACAGGCGCATATGAGGCGACATATAGAGGTTAAACCTTACAAGTGTAGTTACAAACCTTGTGGGAAAAGGTTTAAAGATAAgGGTGATCTCAATCGCCACCAGATAATCCACTACCCAGAGAACCAGCACGTGTGTACTAGCTGCAACAGACGCTTTCCGCGCAAGTTCAGACTGGCCAGACATATACGGAACGGATGTCGAGTGCAGTGTCACTACTGTGGACAATTAAAATACAAATACATGCGTACTCCGATCGCACCGCCCAACCAGTGCCCTCGTGATGAAATTTATCAACACAACAAGAACACCAGCTAA
- Protein Sequence
- MKEKAKKKGAKSKPNRKLFVYSCPHCRKNFDNSSNWLSHVKLHSTEEPYHCDMCDYKCKVQKYLTRHVKKTHTKPTGHQCPVCGKCFHFDCNLRDHMRVHTGEKPFKCNVCDKAFNSRYSLSGHKMIHTGEKPYQCQYCDYACRDNSTIRRHIERHLGISKDYPCSICKKNFKKKETLQIHVDEVHFELDTRKHPCAQCDKVFKTKGTLTIHVNTVHKKTNRIKCEICGRLSTKNNLQAHMRRHIEVKPYKCSYKPCGKRFKDKGDLNRHQIIHYPENQHVCTSCNRRFPRKFRLARHIRNGCRVQCHYCGQLKYKYMRTPIAPPNQCPRDEIYQHNKNTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907248;
- 90% Identity
- iTF_00907248;
- 80% Identity
- -