Lnic034801.1
Basic Information
- Insect
- Luperina nickerlii
- Gene Symbol
- -
- Assembly
- GCA_963855955.1
- Location
- OY979688.1:2268922-2300458[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.9 2.1e+02 3.9 0.2 1 23 762 784 762 784 0.95 2 14 0.0035 0.38 12.5 1.9 1 23 792 814 792 814 0.96 3 14 0.00088 0.098 14.4 0.9 1 23 820 842 820 842 0.98 4 14 0.00088 0.098 14.4 0.9 1 23 864 886 864 886 0.98 5 14 0.00088 0.098 14.4 0.9 1 23 908 930 908 930 0.98 6 14 0.00088 0.098 14.4 0.9 1 23 952 974 952 974 0.98 7 14 2e-05 0.0022 19.5 2.4 1 23 981 1003 981 1003 0.99 8 14 3.9e-06 0.00043 21.8 0.4 1 23 1009 1031 1009 1031 0.93 9 14 1e-06 0.00011 23.6 0.2 1 23 1037 1059 1037 1059 0.98 10 14 1.5e-05 0.0017 19.9 2.4 1 23 1065 1088 1065 1088 0.96 11 14 0.00016 0.018 16.6 3.0 1 23 1094 1117 1094 1117 0.96 12 14 0.00014 0.016 16.9 0.9 2 23 1124 1145 1123 1145 0.97 13 14 1.9e-05 0.0021 19.6 1.0 1 23 1151 1173 1151 1173 0.97 14 14 0.05 5.5 8.8 0.1 1 23 1179 1203 1179 1203 0.93
Sequence Information
- Coding Sequence
- ATGGGTGATTTTAATACCTGCTTGATTAAAAATGACACTCGCTCCCTTAAACTCCTTTCACTCTTGTCTTCTTTCAATCTTCAAGTTTTGCCTCTCTCTGCAACTCACTATTTTCCTAACTGTTCACCCTCGTTTCTAGATCTTATGATTGTCTCCTCTCCTAGTAATGTTTCTTACCATGGTCAACTTACGGCTAATTTTTCTTACCATGATCTCATTTACCTTTCGTATCGTATCCGTGTACCCAAGCGTAAGTCCCAGTTTTTATATCTCCGTAACTACAAGGGCATAGATCTGGAAGCTTTGCGGCTTGATGCTGGCAATCTCGACTGGACCCCTCTGGTTGAGATCGATGACATCGACGATAAGGTGAAATGTTTTAACGCAACCGTCCTCGACTTATATGATCAGCATGCCCCTATCCGACGTGTCAAAGTTAGACATAACCCTGCACCATGGATAACGCTACAAATTAAAGAGCTTATGGCTCGCAGGGATAAGGCTAAGAGCAGATATAAGCGCAGACCTTCAGAGCTGAATCTCTCTTATTACAAATCATTACGTAATCGCTGCAGTCATCTGTGTCGGGATGCTAAAAGACGCTATTTCCACGACCAACTCAATAACCGCAGTTCTTCCGATGTATGGAAATTTCTCAAATCTGTAGGCATAGGCAAGTCACCTGCCAACCAGTGTAAGGATGTGAACCTCAATGATCTCAACAAGCATTTCTCTCTCCTTCCCTTTTCTCTTGATCCGTCTGTCAAGGCTGCGACACTAGAGAGTCTTGCTAGTATGCCGTTACCACAATATTCTCACTTTGAGCTTAACGATGTTACTGAGGATGACGTTAAGAAGTCTATACTTGCGATTACTTCTTCTGCAGTCGATGACTTGCAGCTTTATCGACATTTTACTGTAGCTAACGCGAGTTCTGCAATTGCTGCAATGAATCATGACCTGGCTCGCATCAGCGATTGGGCTAAGTCATTTGGTTTGCAAATTAACCCAACTAAATCCCAGGCCATGATCATAGGCAGCAGATTCGTTCGCAATGCGGCTGATGTTACATCTCTGATGCCTTTATATCTCGATAGTGTTCGCATTGACTATACTGAAACCGCTAAAAATCTGGGTGTAGTTATTGACTCCAACCTTTCGTGGCGTGCTCAGGTCAATGAGGTCAGCCGAAAGCCCTCCACAGCCTCAACATTAAACCTAAAAGTGACTGTTGGATCATCAGTCCTAACGCAAACGATAATAACATCAACCAGTAAACCAATTGAGAAGCCTACTTTAGACTCAAATTCCATCCTGACTTCACTCTCCAACGCTTTGAAGGATGACCTAGAAAATATGGTGACTACTCAAAGTAATATGAACCCTATGAACCAAAAGAATTCAATATTGAGTTTTAGTGTGAACTCTTTGCCTAAGGATTTTCTTTCTGGCGCCATTTTGAGGAAAATTGATGAAAAGGATGAGGATTATGTAAAGGGAGAGGAGACGAATGAAGATCATCCTATGGAGATTGATGAAGattGTTTGTCTGTGGTTCCTGCAACGTCTGCCGATGGTGGAAACTTATTACAAGTTGATGGACTACAGTCAAAATCCGACCCTACTGCCGAAGTGAGCGAATACCTAAACCTGCcgacgctagatggcgctgatgaAGAGAGTGACGCACAGAAGTACATCCTCGGCAAGTTGGAGATACTCAACGAGGAAGATgaagacgacgacgacgatgaAGGCCACACCATAGTGGTAGACAGTGAAAACGGCTCTATTCTGCGAATGGTAGCCGGACAGAAGTTTATATACGAGGGCGGAGAGATATCACTGGTGATGCCGGATGATGATGAGCAGCAAGACGGTGATGGTGACCATCTCGAGAATGGTGATAGTCAAGATTCTAATGATGAATCTCAGATCGAGTTACAAGTATCTGGCGACGAGGAAACTGCGAACGCGATCATTGCTGCTGCTCAAGAACAAGGCGGTGCCTTCATCAAGGTGGAGTCTGGTGAGATGTTCCGCGTGAAGTCCGTCTGCAGCGCCGCGCCTCAGGCCGCGCCGCACACCGCGTCGCACACCGCGTCGCACACCGCGCCGCACACCGCGCcgcacgccgcgccgcccgACGCGCTGCAGATCGTGGCGCAGGAGGGCAACCTGTTCAAGTGCTTGCTGTGCGAGAAGAATGATGAAACTCCTTCAAGTCTTGAAGACGCAGACAGAATGATGCGCCACTTAAAATCAAAGCACGACGCGAGGATATACCTGTGTCGTTTCTGTGGCGCCGTCATGAGGAAACGCACGGAATATGCCACGCATATAGCGTCacacgcgccgcccgcgccgcgcgcgcaCCGCTGCGGCGCGTGCGGCAAGTGCTACAGCACGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCGGGCGCGCGGCCCTACGCCTGCGCGCTGTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAAGCGCACCTGAAGACTCATGCGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCGGGCGCGCGGCCCTACGCCTGCGCGCTGTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAAGCGCACCTGAAGACTCATGCGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCGGGCGCGCGGCCCTACGCCTGCGCGCTGTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAAGCGCACCTGAAGACTCATGCGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCGGGCGCGCGGCCCTACGCCTGCGCGCTGTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAAGCGCACCTGAAGACTCATGCGGTGCGCCCGCGTCCCTACAAATGCACTCAGTGCGGTAAATCGTTCCTCACACAACAAAATCTGAATCAGCATGAGAAAACACATTCAGGTGTCAAGGATTTCGTCTGTAATATATGCAacaAAGCCTTCAGTACGCAACATAACTTGGAAGTGCACGGCGTGGTACACTCTGGGAACAAAGCGTTTGTGTGCAGCGTGTGCAGCAAAGCATTCGCGAGGAGAGCAGAGTTGAGGGACCACATGCGGATACACAcggGCGAGCGTCCATTCTCGTGTGACATCTGCGGATCTAGCTTCACTCAGCGCTCCAATTTACACTCGCACCGCAGAGCGACGCACTTCGACGACAAGCGATACCACTGTGAACAGTGTCCGAAGAGGTTTAAAAGAAGGAGATTACTGGAATACCACATAAAGGCGTCGCACACTGGCGAGCGGCCGCTAAAGTGCGGCATCTGTAGCCTGTCGTTCGTGTACCCCGAGCATTACAAGAAACACGTGCGGATACACAGCGGGGAGAGGCCCTATGTCTGTGAGATTTGCGGCAAATCGTTCAACTCCCGCGACAACCGCAACACGCACCGCTTCGTGCACAGCGACAAGAAGCCGTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAGCAGCTGCTGTACGCGCACATGAACACCAGCGGACATCTGGCGGAGTCGATAGTAGTGAATCAACCTAGGGTGATCAAAGTTactgaaaatgGCACAAACCAACCAACAGAAATAACACATATAGAAGCGAAAAATAGTAAATTTGATGCGatatttgAGTCCAGTGAATTGGAGGCGAGCGTAAAGTCTGTCGTGAAAGCGGAAACGGAAGTGAATCTAGAAGACGCCAAGTTCTACATCACGGAAGATAAGAAGTTAATATTACAAGACAGTGataaaaCAACTTTAAATCTAATACAAGAGGGTGATGAGTCTACGTTGCTAACTATACATAATATAGGAGAGAGAGCCGAGGGCACGATACTAGAAGCTGTAGATGCCGATCAACTCGGGGAACAGACTGAGaTCGTAGCAAATGACGAAAATGGCGGTATGGTGCGTCTAATACAAATCAAACTGCCGGACGGGAACAACGGATGGGTCGCCATTAACCGCTGA
- Protein Sequence
- MGDFNTCLIKNDTRSLKLLSLLSSFNLQVLPLSATHYFPNCSPSFLDLMIVSSPSNVSYHGQLTANFSYHDLIYLSYRIRVPKRKSQFLYLRNYKGIDLEALRLDAGNLDWTPLVEIDDIDDKVKCFNATVLDLYDQHAPIRRVKVRHNPAPWITLQIKELMARRDKAKSRYKRRPSELNLSYYKSLRNRCSHLCRDAKRRYFHDQLNNRSSSDVWKFLKSVGIGKSPANQCKDVNLNDLNKHFSLLPFSLDPSVKAATLESLASMPLPQYSHFELNDVTEDDVKKSILAITSSAVDDLQLYRHFTVANASSAIAAMNHDLARISDWAKSFGLQINPTKSQAMIIGSRFVRNAADVTSLMPLYLDSVRIDYTETAKNLGVVIDSNLSWRAQVNEVSRKPSTASTLNLKVTVGSSVLTQTIITSTSKPIEKPTLDSNSILTSLSNALKDDLENMVTTQSNMNPMNQKNSILSFSVNSLPKDFLSGAILRKIDEKDEDYVKGEETNEDHPMEIDEDCLSVVPATSADGGNLLQVDGLQSKSDPTAEVSEYLNLPTLDGADEESDAQKYILGKLEILNEEDEDDDDDEGHTIVVDSENGSILRMVAGQKFIYEGGEISLVMPDDDEQQDGDGDHLENGDSQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMFRVKSVCSAAPQAAPHTASHTASHTAPHTAPHAAPPDALQIVAQEGNLFKCLLCEKNDETPSSLEDADRMMRHLKSKHDARIYLCRFCGAVMRKRTEYATHIASHAPPAPRAHRCGACGKCYSTRTLLAEHANLHSGARPYACALCGKAFASKYTHQAHLKTHACYSSRTLLAEHANLHSGARPYACALCGKAFASKYTHQAHLKTHACYSSRTLLAEHANLHSGARPYACALCGKAFASKYTHQAHLKTHACYSSRTLLAEHANLHSGARPYACALCGKAFASKYTHQAHLKTHAVRPRPYKCTQCGKSFLTQQNLNQHEKTHSGVKDFVCNICNKAFSTQHNLEVHGVVHSGNKAFVCSVCSKAFARRAELRDHMRIHTGERPFSCDICGSSFTQRSNLHSHRRATHFDDKRYHCEQCPKRFKRRRLLEYHIKASHTGERPLKCGICSLSFVYPEHYKKHVRIHSGERPYVCEICGKSFNSRDNRNTHRFVHSDKKPYECVACGAGYMRKQLLYAHMNTSGHLAESIVVNQPRVIKVTENGTNQPTEITHIEAKNSKFDAIFESSELEASVKSVVKAETEVNLEDAKFYITEDKKLILQDSDKTTLNLIQEGDESTLLTIHNIGERAEGTILEAVDADQLGEQTEIVANDENGGMVRLIQIKLPDGNNGWVAINR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -