Lnic022767.1
Basic Information
- Insect
- Luperina nickerlii
- Gene Symbol
- -
- Assembly
- GCA_963855955.1
- Location
- OY979677.1:13897939-13898298[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.7e-07 0.00019 22.3 0.1 4 40 17 52 14 55 0.92
Sequence Information
- Coding Sequence
- aTGCGAACTTATAAAAGGAAAACTGCAAGAGGTTCTTACTCTACTCAACAGTTAATTGAAGCTGCAAATGCTGTCAAAGAAGGAAAAAGTGTAAATGCCGCAGCCAAGGAATTCGGAATCAAGCGAATGACTTTGACCAGATTCATTAAGAAATCAGGCTCTGAAAGAGGTGTTCCTTCAATGGGTTATACAACTCCAAGGCAGATATTTTCTCCCGAGCAAGAagattgtttgaaaaaatacttACTACAAATGGCATCAATCTTCTATGGACACTCCCCAAAAGATGTTCGTCGCTTTGCCTACGAGTGTGCTATTAAATTCGGAATCGGTATTGTTTCACTAAGAGATTTAGTTTag
- Protein Sequence
- MRTYKRKTARGSYSTQQLIEAANAVKEGKSVNAAAKEFGIKRMTLTRFIKKSGSERGVPSMGYTTPRQIFSPEQEDCLKKYLLQMASIFYGHSPKDVRRFAYECAIKFGIGIVSLRDLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01118249; iTF_00924601;
- 90% Identity
- iTF_01118249; iTF_00924601;
- 80% Identity
- -