Basic Information

Insect: Luperina nickerlii
Gene Symbol: PGBD4
Assembly: GCA_963855955.1
Location: OY979674.1:18431565-18433903[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4.9e-09 2e-06 28.6 0.0 1 44 3 46 3 47 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4.9e-09	2e-06	28.6	0.0	1	44	3	46	3	47	0.91

Sequence Information

Coding Sequence: ATGTGGACGGAAGAAAATTTGCGTGGGGCAATGGCAGCAGTTGTTCGGGATAATATGACACAAAGCGCTGCAGCAGATGTTTATGGCATTCCTAGGCAAACACTCGCTGATCACCTGTCAAAGGGAAACGTCGTGAAACGAATGGGTCGCCATTCCATTATGAACGAAGCTCATGAAGCTTTCCTCGTCAACAAGCTAATAAAACTTACTAATAGTGatATAACAGACAAGAATTTCGAGAACATCCTAGAAATCTGGCTACAAGATGACGACACTAAAGTTGACTTAGCCCTTAACTTCGACAACAACGACGACGGTTGTTTTCTTCCGGTCATGCGTAACGCAGCGACTGAACCAGCATGTGACGCTGACATGACTGAACTAGAGACTGAAGTATTACAGACTGAAGACGAATTAAATGACCGAATTTTACGCGACATAGTGCCTAACAACGACTACTACACTTTTGACTGGAAGAAGGACAGGGCGAACTTTACTGGACGACGAGAGACTTTTACAGGGTTATCGGGAACGACTTTTGACATAACAGACAAGACTCCTGTtgacattttttacaaaatgtttgaCACTAATTTTATTGACCTACTTTGCACAGAGACTAACCGCTATGCAGAGCAGAAGATAGCTCGCTTAAAAGCGGAGAACAAGCTGCTTCCAACATCGCGTCTGCATAGATGGACTCCAACTGACTGCAACGAAATGATTACGTTTTTAGCAGTATTGATTCTGCAAGGCCTGTATCCGTTACCAGAAGAGGAAAAATACTTCTCTTTTAACGGGTTTGGGACCATGCCGTATTTTTCACGCATCATGTCCTTTAATCGTTTCTCACTCCTAAAATCGTTATATCATTTCGTCGATAATGAGACTTTGACTAACAAGACTAAACTTTGTAAAATACAACCGGTGCTTGACTACCTAAATGAAAAATTTTCCACGTTATACATGCCTGCCCAAGAGATAGCCATTGACGAATCTCACCTCAAGTGGCACGGGCGATTGAGCTTTGCTCAAAAAATTGCCACTAAAGCCGCCCAAGTTGGTGTAAAAACATATGAGCTATGTGAGTCTCGCACTGGCTATCTCTGGAAGTTTTTTGTGTATGTTGGAAAAAATACTCAGGCTGCCCCGACCAATGATGACGAGACGATTGACCAACCCCATGACGAGACGGTTGACGAACCCGATGACGAGATTGTTGATAGACCCGATGACGAGACAATTGTCCAGCCCAATGACATATTGCATGACCGGCCTGAAAACGAGACGCTTGACCAACCACAGGACGAGACTGTTGACCGACCAAATGACAATTTTGCAAGTCCCACCAACGCTACCGCTAAAATAGTATTGGACTTGATAGAGCCACTACTTGACCGAGGACATACTGTAATAATGGATAATTTCTACAACAGCCCATTATTATTGCGATGTctcaaaaaacacaaaactgaCTGTTATGGAACATTACGTTTGGATCGTGAATTCGTGCCCGACTCGCTCAAGACTCTGACCAAGACTGACCTACGACAGGGTGAGGTAGTGGCAAGCTACAGTTCAGACTTGTCTGTGATGGTATGGCGAGATGCTAATTTGGTTAGCATGATCTCCACATACCATCACTTCCAAGTGGGGATTCAGAACAAATACAACCGACTGACATATAAACCTAAAATTGTAATTGATTACAATAAGTCCATGGGCGGAGTGGATAGAAAAGATCAATTTTTATCTGCTCAGCCCGTGGAACGGCTTAGAAACAAGATCTGGTATAAGAAGGTCTTCTGCAGGTTGCTAAACACTGCTGTGTTCAATGCCTATGTAATATTTTCATCGCAGAATCCGAAAATATCACATAGGCAGTTCCGGACCATTTTAGCGGAAGACCTTCTTAAAATACATCGACGCATAGACTTGACGACTGAACCCCGACTTTATGCGAACAGCACTAGACAAGGACAATTGACAATACGAACAAAAGACCGACCGAACGTTGATCACGACCACTTTCCTACGCGATCTGATATTAAAAAAGCGCGTTGCTGGATGTGCACACGCCGAAAAAGGAATACGAGGACAATCTGGAAATGCATTCAATGCGATATAAGTTTGTGTATTGAGCACTGTTTTAGAGAATACCACAAACAAGTcttacaattataa
Protein Sequence: MWTEENLRGAMAAVVRDNMTQSAAADVYGIPRQTLADHLSKGNVVKRMGRHSIMNEAHEAFLVNKLIKLTNSDITDKNFENILEIWLQDDDTKVDLALNFDNNDDGCFLPVMRNAATEPACDADMTELETEVLQTEDELNDRILRDIVPNNDYYTFDWKKDRANFTGRRETFTGLSGTTFDITDKTPVDIFYKMFDTNFIDLLCTETNRYAEQKIARLKAENKLLPTSRLHRWTPTDCNEMITFLAVLILQGLYPLPEEEKYFSFNGFGTMPYFSRIMSFNRFSLLKSLYHFVDNETLTNKTKLCKIQPVLDYLNEKFSTLYMPAQEIAIDESHLKWHGRLSFAQKIATKAAQVGVKTYELCESRTGYLWKFFVYVGKNTQAAPTNDDETIDQPHDETVDEPDDEIVDRPDDETIVQPNDILHDRPENETLDQPQDETVDRPNDNFASPTNATAKIVLDLIEPLLDRGHTVIMDNFYNSPLLLRCLKKHKTDCYGTLRLDREFVPDSLKTLTKTDLRQGEVVASYSSDLSVMVWRDANLVSMISTYHHFQVGIQNKYNRLTYKPKIVIDYNKSMGGVDRKDQFLSAQPVERLRNKIWYKKVFCRLLNTAVFNAYVIFSSQNPKISHRQFRTILAEDLLKIHRRIDLTTEPRLYANSTRQGQLTIRTKDRPNVDHDHFPTRSDIKKARCWMCTRRKRNTRTIWKCIQCDISLCIEHCFREYHKQVLQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -