Lnic004777.1
Basic Information
- Insect
- Luperina nickerlii
- Gene Symbol
- clz9
- Assembly
- GCA_963855955.1
- Location
- OY979664.1:22803017-22805497[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-09 9.2e-07 29.7 0.1 1 41 16 56 16 59 0.94
Sequence Information
- Coding Sequence
- ATGCCACGAAAGTATTATAGAAAATCGCTTCGTGCCACCAATTACACTCAGGAAGATTTAAATGCTGCCTTAGAAAGCATAGCAAAAGGGGAAAGAAGCCAATATGCTGCTgcaaaacattacaaaatacCAGTATCGACACTCAATGACAGGATTAAGGGTAAAACTAGAATAAAAAGCCAAACCCTGGGTAGACCAACCGCCATTCCTAACGAAATAGAAGTCAGATTAGCCAATGCTCTCATAATACTGGAAAAATGGGGTTTTGGTCTCTCCAGGGTCGAAATAATAAACCTCGTCGAAGAATTCATCAAACTGAATGAAATCGCTACACCGTTTAGGAATGGTAGGCCGGGATCGGACTGGCTGTATAATTTTCGCAAACGCCATGGCCTTTCTATAAAAAAACCACAGCCTATAGAACATATCAGACGCCAAATGACGGATCCTTTTATCattcaagaatattttaatttactagAAAAGGTATTGCTGGACCTTGATTTAGTAAACAGACCTAGCCAAGTATGGAACCTAGATGAAACATCGGTCTCTCTTGATCCATCAAAGACTAAAGTAGTTGGCAAAATCGGAAAAGCTTCCTCACGCACCACATTTGGCACAGGAAAAGAGAATATAACAGTATTGACTGCAGTTAATGCTAATGGAGCAAAATTAACGCCACTCATTGTTTTTAAAGGTAAATATGTTTGGAATCAGTGGATAGCGGACGTAAAAAATGAATACGGGTTTGAATTAGCATATGCTGCTAGTAAAAGAGGTTGGATGGAAACGGACATATTTCGTAATTATATGGAAAAAGTCTTCATTCCCAATCTCGGAGACGAAAGACCTGTATTACTGATTTATGATGGCCACGGAAGCCATGTCGATATTTCTGTCGTAGAATTAGCTACTCGTAATGGtgttactattttaaaattgCCACCTCACACTTCACATTTGCTACAACCCCTTGACGTCTGCGTCTTCAAATCATTTAAAACACGATGGGATGCTAAGTTGGTTGACTGGCAACGACATAATGTGGGTGTTAAATTACCcaaaaaagaattttcgaaaCTATTTGCAAAAATATGGCACGAAATTAATCCCGAAATTATACGTAATGGTTTTAAGAAGGCAGGAATTATTCCTTTCAATCGTAATACGATTCCTGTTGAAAAGTACGATCCCAGATCTTATAGCAGATGGCTTAAAAGCAAATCTGAAAACGAAAGTATTGCTTCTCATGCAATTATGGCGACAAAAACTGTCAAGAGCCTTAATAACTTATGTGTTGATGTTATCAATTTGTATTTAAATCAAACTGTTATACCACACGTGTCTATACCAAATGACACGCAATCTTCCAATACAATGAACAACTGCTTATTTATACATAGTGATATACCGGAAAGCTATCAAGAGGAAGAAACTGTTACTAAAGAGCCCGAAGtgttaacaaaaaatatgtccaacaaaataattatactcTCTGACATAATGATTAAACCTGGTACTTCAAATGTCCATTATTTGACCAGACTTTCCAAAAACGATAATGAAAACACTACTTTTGCTGCTTTAAATAGTTGTGACCTGCCAGAATGTCTGCAAACACCACAAGTAACTAATTCTGATACTTTTAATAACTCCCCTAATAATTCGAAAAAAACAGTTAATTATGAACACACGTTTGAAAATTTACTTTTAGAAAGAATACGACAGACCAGACCCGAAAACAATAACACCAAGAGAAAGCGTATAGGTCTTGGTGCTGAAATTATTACACAGAaatgtttagaaaactataatacacaacaaacgacaaaactaaaaaataccaaagaaaagaaaaaaatgaaagtaGAAAACGAAAAACAAGATGAAACTGTTGCtaaacctaaaataaataataaacaaaataagaagGAACAAACTGATAAtaaatcaaagaaaaataagaaaagaaaaattgaaGCTGACAATAAAGAAAAGAATAGACAAAAAGGGGAACTCTGTGACAGTGATTCGAGTTTATCTTCTTTATTTGAATTAGCTGATTCAGACGAAATAGATTATGAAGAATATGTAGCTGAACTTTTAAACGAAGAAAGAGACAAAGAAAATGATGAGCCCAATGAGTCGATGGGACTACATGATATTGCATATTTTACTAAACAGGatgaattaaaagaaaatgacTGGATAGTAGCCCGTTTCGCCACAAAAAAAAgcttaaaacattttgttggcAGAGTATTACTGATTGACAAGACGTTACCTACCGTCAAGTTTTTACGTAAAGTTAAGGATAGTAAATATGAAAAAGGAACAGTGTTCACTTACCCAATAATTGACGACATTTGTACCATAAAACATAGTGATGACATAGTGTCAATATTGCCAGAGCCACAGATTTTAAGACGGGGTCAAATAATATTTGACgtcaatttcaataaatttaacATACAATga
- Protein Sequence
- MPRKYYRKSLRATNYTQEDLNAALESIAKGERSQYAAAKHYKIPVSTLNDRIKGKTRIKSQTLGRPTAIPNEIEVRLANALIILEKWGFGLSRVEIINLVEEFIKLNEIATPFRNGRPGSDWLYNFRKRHGLSIKKPQPIEHIRRQMTDPFIIQEYFNLLEKVLLDLDLVNRPSQVWNLDETSVSLDPSKTKVVGKIGKASSRTTFGTGKENITVLTAVNANGAKLTPLIVFKGKYVWNQWIADVKNEYGFELAYAASKRGWMETDIFRNYMEKVFIPNLGDERPVLLIYDGHGSHVDISVVELATRNGVTILKLPPHTSHLLQPLDVCVFKSFKTRWDAKLVDWQRHNVGVKLPKKEFSKLFAKIWHEINPEIIRNGFKKAGIIPFNRNTIPVEKYDPRSYSRWLKSKSENESIASHAIMATKTVKSLNNLCVDVINLYLNQTVIPHVSIPNDTQSSNTMNNCLFIHSDIPESYQEEETVTKEPEVLTKNMSNKIIILSDIMIKPGTSNVHYLTRLSKNDNENTTFAALNSCDLPECLQTPQVTNSDTFNNSPNNSKKTVNYEHTFENLLLERIRQTRPENNNTKRKRIGLGAEIITQKCLENYNTQQTTKLKNTKEKKKMKVENEKQDETVAKPKINNKQNKKEQTDNKSKKNKKRKIEADNKEKNRQKGELCDSDSSLSSLFELADSDEIDYEEYVAELLNEERDKENDEPNESMGLHDIAYFTKQDELKENDWIVARFATKKSLKHFVGRVLLIDKTLPTVKFLRKVKDSKYEKGTVFTYPIIDDICTIKHSDDIVSILPEPQILRRGQIIFDVNFNKFNIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00147321;
- 90% Identity
- iTF_00785139;
- 80% Identity
- iTF_00924571; iTF_00924572; iTF_00924573;