Lnic035971.1
Basic Information
- Insect
- Luperina nickerlii
- Gene Symbol
- -
- Assembly
- GCA_963855955.1
- Location
- OY979689.1:10658098-10658946[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.5e-13 1.8e-10 41.5 0.0 1 41 15 55 15 57 0.95
Sequence Information
- Coding Sequence
- atgccAAGTACATACAAACGGACGTCGCAGCAACAGACATGGGACCCGGATGCGGTGGAAAAAGCTATAAGAGCTGTGCGAAACGAAGAAATGGGCTTCCTCAAGGCCAGCAAAAAATTCAAAGTTCCTCGATCGACGCTCAAAAGACGTGTAAAAGGAATAATCAAAGAagctattgaaaataaaaaagtattggGGTCTTGCCGCCCAGCTTTTAGTATGGAGCAAGAAGAAGAATTGGTGCATCACATTTTAGAAATGGAAAAGCGATTTTACGGATTAACTTTACATGATGTACGGAGACTGGCCTATCAGTTGGCTGAACGCAATAATATAGAACACAAGTTTAATAAAGATACTCAAATGGCTGGGAAAGCATGGATTTCTGCTTTTAGAAAACGTCATCTGGTACTGACATTAAGAAGCCCAGAAGCAACCTCTTTTGCTCGAGCACAGGGCTTTAATAAAGTAAGTGTCACGAAATTTTTTGACCTACTGGAAGACGTGAGGTCTAAAACCAACTACCCACCTCATCGTATTTTTAATGTGGATGAGTCTGGTTTTACGACCGTGCAGAGTAAAAGCTCTAGAATATTAGCGCAAAAGGGAAAGAAGCAGGTGGGCGCTATCACCTCAGCAGAGCGGGGTGTATTAAGCACCGTTGTAATTTGTATAGCGGCTGGTGGAAAGTTTATTCCCCCGTTTATTATTTTCCCCCGAAAAAGAATGAAGATAGAACTTCAAGATGGGGCACCACCAGGCACAGGATTTGCTTGTCATTCGTCAGGGTGGATGCAGTCGGACATTTTTACAGATTGGTTAAAACATTTCCTCAAATTCGCCAACTGA
- Protein Sequence
- MPSTYKRTSQQQTWDPDAVEKAIRAVRNEEMGFLKASKKFKVPRSTLKRRVKGIIKEAIENKKVLGSCRPAFSMEQEEELVHHILEMEKRFYGLTLHDVRRLAYQLAERNNIEHKFNKDTQMAGKAWISAFRKRHLVLTLRSPEATSFARAQGFNKVSVTKFFDLLEDVRSKTNYPPHRIFNVDESGFTTVQSKSSRILAQKGKKQVGAITSAERGVLSTVVICIAAGGKFIPPFIIFPRKRMKIELQDGAPPGTGFACHSSGWMQSDIFTDWLKHFLKFAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00072747;
- 90% Identity
- iTF_01230457;
- 80% Identity
- -