Lfer026010.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- clz9
- Assembly
- GCA_949709985.1
- Location
- OX453265.1:5123519-5141054[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.83 72 4.9 1.6 1 20 727 746 727 748 0.95 2 10 0.042 3.6 9.0 0.1 2 23 776 798 775 798 0.95 3 10 2.6 2.2e+02 3.4 3.3 1 23 821 843 821 843 0.97 4 10 0.0021 0.19 13.1 0.6 1 23 847 869 847 869 0.98 5 10 0.016 1.4 10.3 0.4 1 23 874 897 874 897 0.92 6 10 0.017 1.4 10.3 0.4 2 23 905 927 904 927 0.94 7 10 0.00033 0.029 15.6 5.6 1 23 934 956 934 957 0.95 8 10 0.00053 0.046 15.0 1.3 1 23 963 985 963 985 0.98 9 10 8.6e-08 7.5e-06 26.9 1.3 1 23 991 1013 991 1013 0.98 10 10 4.3e-05 0.0038 18.4 3.1 1 23 1019 1041 1019 1041 0.98
Sequence Information
- Coding Sequence
- ATGCCTCGAAATTACACCCGTAAAACTAATAAAGCAACCTATTCAACCGAAATACTACAACAAGCAATACAAGCTGTCAAAAATGGAAGTATGTCTGCTTATACTGCTTCCAAACATTATAATATTCCAAGATCGACTATAGTAAACCGCATTTACGAACGCAGAGGTTTAAAATCTAATACCTTGGGCAGGAATACCATTTTATCACGTGAAGTAGAGGAGTCATTAGCTAAAAATCTCCACATTATGGAAAAcCCATTCAAAGATGGTGTGCCAGGAGCGGATTGGTTTTTGGGATTTAAAAAAAGGCACTGTCTATCTGTCAAAAAACCCCAACCAGTCGAGTACGCTAGAAAAAATGCGTGTAGACCTGATATTATATATCCATACTTCGACCTGCTGGAGAATACTATCACCGAATTAAATTTGCATGATAAACCTGCTCATATCTACAATTTAGACGAAACGAGTTTTAGTAAAGATCCCAGTAAGTCAAAGGTAGTCGGTCTTAAGGGCTTTACATCGACACGTACAATTTCGTCACCCGGGAAGGACAACACAACCGTCCTATTAGGTTGCAACGCCTTAGGTGATAAAATTCCTCCTCTCATCATATTCAAGGGTAAATACGTCTGGGATGAGTGGACGTGCAATGAGGCATACCCGGGGACAGTATATGCGGCAACCTCAAACGGTTGGATGGAATCTTCCgtgtttgaaactttttttaataaagtttttttaccaaccgttggcaagaataggccgattttattaatattcgaCGGCCATAGTACACATGTGGgcataaatataatagaaagaGCTCGTGCAGCTGGGATAATCATTCTTAAAATCCCACCGCACACTAGTCATGTTCTTCAACCACTAGATCTCTCTGTCATTAAGTCTTTTAAGGATAAGTGGGACGTTGCATTGGTGAAATGGCAAAGAAAGCATATAGGGAAAGTATTACCAAAAAAGGAGTTTTCTAAAATGATAGGTGAAACATGGGCTGCAGTAGAATCCAGTGTATGCTTGGCTGGATTTAGAAAAGCCGGTATTTATCCACTTAACAAAAATGCAGTAAAACCAGAAAAATTCAACCAGATTTTGTTACAAAAATGGATTTTAAAAACATCCAGGTCTGAGAAGAAGAATCTAAACGAaggagaagaagaaaaagaaaaagaaaagaaacagCCAGAATTTCTACAAAAAATGGTATTGACTAGCATCAATAAAATGATTTCTGGTTCATATGCTAGCGTATCACAGGAGATTTACAATGTTCAGAGGGAAGCCAACTGTTTGTTGGACAACAAACCTTCAACAAGCGGTATACGTAATAAGCTCCATCTTTCACTGCAAAATTATAGTCAAGTTTCTAAATATTATGACATATCGCTAAAAAACGAATCTAAGACTGCACCTAAATCTAGTTCTCACACAACTTGTAGTGAAACAGAATCACTAGACGATTCTACTACAAGCGTTTCTGATGACATGAGTGACAACGAATCGAATTTCAACGAATTTCCTTCTCATTCTTCAGAAGTCCAGCGCCTTAACACATTAGATTCCAGAGATACTGCAGTCATTGAAACAAACGATGCATCTTGCTCCACTGAGCACAATATTGCACAGATAAGTTCGACTTACTCTGTAAACAACAATGTCTTAaTATGTGATAGCAGTATTGGTGGCATATGTGATGTTTGCATTACACAACTTCGGAATGCCAGTAATTTCAAGAAGCAAGTGTTACAATCAGAACAGAAGTTCAAGAAAAAGTTGGAGATTTCACTAAAAGGCGACACAGTGAAAATAGAACATGTCTGTGAGAATGACCAGGACTCCGATACAATCGACCAGGATAGTTACTTTGAAGTACTCGAAGcaGAAATGGAAGTTCCCATTAAGGAAGAGGTAGCCATCGAGACGAAAAGTAGAAAACGTGGCATGAAACTGGTGAAAAACGAGACCAAAGCGAAGAGATCTAAGCAAGACCCAGAGACATCGACGAAAGGCGCGGACGGATCGAGAGCGAAGCTcaaaaagaaaaggaaaaataaGGAGGATAGCGCCACGCCAGAGAGACTAGAGCACAGGGTGAATTTAACAAACATATTGAGATATTCCAACGCGACACCGTTCAGAGATAAAAAAGCGAAAGGATTCTCATGCCTATATTGCTGTAAATATTTCACAGACATTGAAGAGCTCAGGACCCATACAGACCTTAAATCGGAAAAAGACAAATTGAACTCTATGAACGACTACAAATTGAGCTATAATCCTATAAAGGTCGATATAACAGATCTTATGTGTACAATTTGCGACACCGAAGTAGACGATTTGAACGATCTCAAAGAGCATTTAGTCACGAATCACGATAAAGTCATTCATACGGACATAAAAGATGTCATATTACCGTTTCGTTTGGAATCCGGTAGCAATTTCACTTGTGTGATATGTTCAGTTGTACATATCTCGTTCAAGAATCTCTATCATCACATGAGCAGTCACTACAGGAACTACTGTTGCAAGAATTGCGGCGCGGGGTACGTAACGATTGCGGCGCTCAGGAAGCACGGCAAGACCCACGAGAACGGCAACTTCCCGTGCGGTTATTGCGACAAAATCTACACGTCCCTTGCTAAGAGGAAGCAGCACGAAAAAGGTGTGCACACAGGCGGATGGTTGAGGAACAAATGCCCTCACTGTCCAGAGATCTTCGTCAGTTACTACGACAGGAACGACCATTTGGTTAAAGTTCATAACGAGACTCCGGTAATCTATCCGTGCAATGCTTGCGACAAGACGTATAAAAAGAAATTCGAACTCAACAGGCATATAAAGCACCATCATCTGCAacagaaaaattttaaatgcgaCCTTTGTAATGCTAAATTCTTCTCAAAGAGAGGCCTGAGAGACCATATTCTCAGGCATTTAGGCGGTGAGAGCTTCCCATGTGACTTGTGCGGAAAGACCTTCTCAAGGCAAAGGACTTTGAAAGAACACCTGCGTACGCACGAAGACGACAAGAGGTTCCAGTGCGAAGTCTGCAAGAAGACTTTTGCGCAAAAGTGCAGCTTGAAAGGGCATATCAAGTTGCATCAGGATGATTTGGATATCTTCAAAGAATTTGACGATGTTAAACATTTAATTGACAATAGAGACATAACGCTTAAGCAGATAGCAGAAGAGAATAAAGTTAAAGCGGCAGCAGAAAAAGAGGCAAAAGAGAAGGATTGCGTGATCGGGAACTCACAGATTTAA
- Protein Sequence
- MPRNYTRKTNKATYSTEILQQAIQAVKNGSMSAYTASKHYNIPRSTIVNRIYERRGLKSNTLGRNTILSREVEESLAKNLHIMENPFKDGVPGADWFLGFKKRHCLSVKKPQPVEYARKNACRPDIIYPYFDLLENTITELNLHDKPAHIYNLDETSFSKDPSKSKVVGLKGFTSTRTISSPGKDNTTVLLGCNALGDKIPPLIIFKGKYVWDEWTCNEAYPGTVYAATSNGWMESSVFETFFNKVFLPTVGKNRPILLIFDGHSTHVGINIIERARAAGIIILKIPPHTSHVLQPLDLSVIKSFKDKWDVALVKWQRKHIGKVLPKKEFSKMIGETWAAVESSVCLAGFRKAGIYPLNKNAVKPEKFNQILLQKWILKTSRSEKKNLNEGEEEKEKEKKQPEFLQKMVLTSINKMISGSYASVSQEIYNVQREANCLLDNKPSTSGIRNKLHLSLQNYSQVSKYYDISLKNESKTAPKSSSHTTCSETESLDDSTTSVSDDMSDNESNFNEFPSHSSEVQRLNTLDSRDTAVIETNDASCSTEHNIAQISSTYSVNNNVLICDSSIGGICDVCITQLRNASNFKKQVLQSEQKFKKKLEISLKGDTVKIEHVCENDQDSDTIDQDSYFEVLEAEMEVPIKEEVAIETKSRKRGMKLVKNETKAKRSKQDPETSTKGADGSRAKLKKKRKNKEDSATPERLEHRVNLTNILRYSNATPFRDKKAKGFSCLYCCKYFTDIEELRTHTDLKSEKDKLNSMNDYKLSYNPIKVDITDLMCTICDTEVDDLNDLKEHLVTNHDKVIHTDIKDVILPFRLESGSNFTCVICSVVHISFKNLYHHMSSHYRNYCCKNCGAGYVTIAALRKHGKTHENGNFPCGYCDKIYTSLAKRKQHEKGVHTGGWLRNKCPHCPEIFVSYYDRNDHLVKVHNETPVIYPCNACDKTYKKKFELNRHIKHHHLQQKNFKCDLCNAKFFSKRGLRDHILRHLGGESFPCDLCGKTFSRQRTLKEHLRTHEDDKRFQCEVCKKTFAQKCSLKGHIKLHQDDLDIFKEFDDVKHLIDNRDITLKQIAEENKVKAAAEKEAKEKDCVIGNSQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00923551;
- 90% Identity
- iTF_00923551;
- 80% Identity
- iTF_00923551;