Lfer028377.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453268.1:7238159-7254520[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0044 0.38 12.1 0.3 1 23 248 271 248 271 0.97 2 11 0.0016 0.14 13.5 0.6 3 23 283 303 282 303 0.95 3 11 0.0041 0.36 12.2 4.3 1 23 342 365 342 365 0.93 4 11 0.0073 0.64 11.4 2.8 2 22 370 390 370 390 0.93 5 11 0.00011 0.0098 17.1 0.9 2 23 412 433 411 433 0.94 6 11 1.1e-05 0.00097 20.3 0.4 1 23 438 460 438 460 0.98 7 11 0.0018 0.16 13.3 4.1 1 21 469 489 469 490 0.95 8 11 0.00085 0.074 14.4 3.1 1 23 502 525 502 525 0.92 9 11 0.036 3.1 9.3 0.2 1 23 531 554 531 554 0.89 10 11 0.034 3 9.3 0.4 3 19 567 583 565 584 0.89 11 11 0.0063 0.55 11.6 1.2 1 23 597 620 597 620 0.98
Sequence Information
- Coding Sequence
- atgaaagaaatagatataaatatagaaGGATTTAATGTCAACGGAATTTGTGTTGGCTGTTTAAACTACGATAGAAAAATGTATTGTTGTAAATACGTTAAGGATTGTTTTAAATTAGTCGCTGATATTGAGgtCCCAGATGGATTAAGTATCCAGGTTTGCTGGGAGTGTTTGGCTGCAATCAAAGGTATCTGGAGATTCAAATGTCAAGTagaaaaatgttatgaaatacTTGAAGCTTATTCTAAAGAgCACATGTTCCTCAATTCGCCGTATGATCTATCGAAGTATGCAGTGGAGAGGTTAAAAATTGATTCGTCACTGAACGAATGCAAATACACACCTGAGCCGGAAGATGTGGATGTTGATGTTGAAGTAACAACAATTAAAAGTGAGAATGAGGACGATGATATGAAGATAGAGCCTGTTAATTTTAGCAATAATGAGGCAGtaataaaagaagaaatacCTATTGAAATAGACACCGATTTCGTGAACGATACAGATTTTCATGATACACCGTACGAACAGAATTACAGCGACGACGAGCCTATAGCCAAattaaagaagaagaaaaagcgGAAGAAAGAAAAGGAGTTACCGTCCGAAACCAAATCAAAGAACCACAGGAAACTGAAAAATCTACCCGAAGATATTATCACGCTGTACGAGATGACCGAAGAAGAGATGTGGAAGATCAGAAGTCAGGAtgttgtgaataaaattttcgtcAAGTTAAAGTACAAATGTGACGATTGCGTTATAGGATTCAATACAGAAAAATTGATGTTTGATCACATGGCTTCCAAACATAAACCTAAATCTGATACCGACTCGAGCAATCCCTGCGACATCTGCAAATCGTACTTTAGGACGAGGGACAACTTATCGGCGCACAGATCGTTGCACATGATCGGTTACCTTTGCGTGCCTTGCGATTTTAAGACCGGATTGAAACGGATCATGACAAAGCACGTAGCTGAGTTTCACAAAGATTCGAATTTCGTGTTCGGCGTTGAAGAATATAAGTGCGGTAGCTGTTATAAGGAATTCAGttctaaGAGTAAGCTAACTTACCATCGTGGTATATGTCACCAAGAACGACCGCAGTGCGACTGCTGTGGAAAAGTTTTCGCCAATAAATTGACGCTGAAACATCATCTCAAGACCAATGATCAAAAAGTCTCTGCTAATGATAAGACTGAAAACAAAGTGAAGGAGAAACAGTACATTCCATGCAAAGACTGCGACAAAGTCTTTCATTCGAGGAAGAGTTTTAGGGCGCATGTagtGATCCACGACGGCTTAGTCTACCCCTGTCCGGTGTGTGGGAAACTGTTCTCCTGGCGTCGAAACTTGAATAGACACCTAAGGAATCATAAAGAGAGAGAACAGGGCGCGCTACACGAATGTCGAGCATGTGGGAAGAGATTCTCCAGTCGAGACTGCTACAATAACCATATGAGATTCAGCAAGAGGCACGTGGACGAAAGGCATTATCAACATGAATGCAGTCATTGCGGAAAGAAATTCCCAACAAAATGGTGTATGATAGATCACATTGACTGGGAACATTTGAAGAAAATCAAATATCAATGCAGCGTCTGTTTGAAGGCATTCAAAACGGCGAAAATAAAGGTGGCACACATGAACAACATACACGGCAGTAAAAAGAAAGAAGCCGACGGCGAACATTTGTGTGAAGTATGCGGCAAGTCGTATAAGACTGTGAAAAGACTAAAAGGTCACGTATGGGCAATGCACACGCATCGAGCTACTGGTAAAAGTTTCAAATGCAAACTCTGCCCAGCGACTTTCACTTGGCAGACGAGTATATACAAACACATGAAAATGATGCACGAAACGGTCCGACGCCCTGTCAAGCCGGCGTACAATATGCATTACACGATCCAAGAACACACTTCGTTCGAGACGACATCTTCGCGTGTGCTTCAACGGGGCAGCGCAGAAAACGAAATTATTGTACCCGACATGGTGTGA
- Protein Sequence
- MKEIDINIEGFNVNGICVGCLNYDRKMYCCKYVKDCFKLVADIEVPDGLSIQVCWECLAAIKGIWRFKCQVEKCYEILEAYSKEHMFLNSPYDLSKYAVERLKIDSSLNECKYTPEPEDVDVDVEVTTIKSENEDDDMKIEPVNFSNNEAVIKEEIPIEIDTDFVNDTDFHDTPYEQNYSDDEPIAKLKKKKKRKKEKELPSETKSKNHRKLKNLPEDIITLYEMTEEEMWKIRSQDVVNKIFVKLKYKCDDCVIGFNTEKLMFDHMASKHKPKSDTDSSNPCDICKSYFRTRDNLSAHRSLHMIGYLCVPCDFKTGLKRIMTKHVAEFHKDSNFVFGVEEYKCGSCYKEFSSKSKLTYHRGICHQERPQCDCCGKVFANKLTLKHHLKTNDQKVSANDKTENKVKEKQYIPCKDCDKVFHSRKSFRAHVVIHDGLVYPCPVCGKLFSWRRNLNRHLRNHKEREQGALHECRACGKRFSSRDCYNNHMRFSKRHVDERHYQHECSHCGKKFPTKWCMIDHIDWEHLKKIKYQCSVCLKAFKTAKIKVAHMNNIHGSKKKEADGEHLCEVCGKSYKTVKRLKGHVWAMHTHRATGKSFKCKLCPATFTWQTSIYKHMKMMHETVRRPVKPAYNMHYTIQEHTSFETTSSRVLQRGSAENEIIVPDMV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -