Lfer016457.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453254.1:20437220-20463724[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.6e-05 0.0014 19.8 0.7 1 23 221 243 221 243 0.99 2 11 0.0016 0.14 13.5 3.2 3 23 252 272 251 272 0.96 3 11 1.5 1.3e+02 4.2 2.3 1 23 276 298 276 298 0.92 4 11 0.00011 0.0094 17.2 2.0 1 23 303 326 303 326 0.97 5 11 7.5e-05 0.0065 17.7 0.1 1 23 330 352 330 352 0.98 6 11 0.00021 0.018 16.3 0.2 2 23 399 421 398 421 0.90 7 11 3.5 3.1e+02 3.0 3.9 2 23 441 463 440 463 0.94 8 11 0.00018 0.015 16.5 1.6 1 23 474 497 474 497 0.96 9 11 0.02 1.7 10.1 3.3 1 23 504 526 504 526 0.95 10 11 3.4e-06 0.0003 21.9 1.2 1 23 532 554 532 554 0.98 11 11 0.0016 0.14 13.5 1.2 1 23 560 583 560 583 0.97
Sequence Information
- Coding Sequence
- ATGGATGAATTGATGATGTGTGGAATATGCCTAAATATGGATGTGAAAATGTATAAACTACAAGGATTTCCACTTGAAGATTATTATACATGGATTGTTGGAAATTTACTTGAGACAAACATTTCACATTATTTCCAATTTGCTTGTTATGAATGTGCTTATCAAATTGAAAAGTATAATTCATTCAGAGAAAAATGCCTTCGGAGTCAATCACTATTGATTGAAATGTTTCAGAAGAAAGGAAAGCTAACAAAAGACGATGTGAAGTCTATTGAGAGGCAGAAATTTGATCTCTGTTCTAATCTTACATACGGTCTGCAAAATATGTATACAGTAGGATGCGTTGATATCAAGCAAGACTTTTATATTAAAGTAGAAAATAATGCTTTAAAAGGTGATGACATTAAAATAGAGCTTAGTTTAGAAGAAAATGAAGAGAATGAAACAATAACTCCACAGTCAAATGATGATGAACATTCTTTCACGCTatcaacagaaaaaaagaagACTTCAAAAAGATTAATATCTAAGGTAGCAAGTGATGAAAATGTAAACCGTTCTCttaaaaaaaggagacaaaagaAGGATTCAGAAGAGATAGAagaacaattaaaacaattgaTGAAAAGGAAAGAGTTGCCCAATTACATAAATTCGAAATACAAGTGTAATATCTGTTATAAAGGCTTTATTGATCCCGATGCTTTCAATTATCACTTGAAGAGACATGATCCTGCTAATGGATCAAAAATATGTCCAATATGTAAGATATGTTTTGTAAGAAAAACAGCTTTTTGCGCCCATCGTTTACAACATGCTAAAAATTACCAATGCAAAACATGCTCTCGAGTCTGTCTCACGCTAACACAAGCCAAAACACATCTAGAAGAACATAAAGGTAAAACCTACAGTTGTGAACAATGTGGTCATGTTACTACAAAGCGATCGTCGCTCTTGACTCACATCAGGTTAAAACATCCGTCTGATTTTGTATGCGATGTTTGTGGCTTCTCATTTGTTAATGAAGTGGGACTGAGGATCCACAAGATGAGGCATAGGTTTGATGCTGAGTCAGAGAGAAGCAGTAGGACGAAAAAGGGCTATTGTGAAAGTTGTAACGTGCACTGCAACTCACATCAAGCTTGGAAGAAGCATATCAATTCCCTATCGCACAAGATTAAAACAGATAGTCTTGTttGTGACAAGTGTGATGAGACATTCGAGAatagtgaaaatttcaaattacattACGCAGCACTGCACTCGAAGGCATACAGACAGCACAAACAAAGCAAGTGTGTGGCAAAAGTCTGGCCCAGCAAATGTTTGCATTGTGACAAAATGTTACCCACCACACGCAAGTTCTATTTCCACTTAAGAACGTCGCATCCCGACAAACCGTACCCAATAACTAAGAATCATATTTGTGATGTTTGCGGCGAACGGTTTATGaacAATTCATTTCTAATGTACCACAAACGGACGATCCATGTTGACGGAGGGTGTTCTTTTAAGTGTGCTGAATGCTTAAAGTCGTTTTCCTGTAAATCCACCCTTCAGATACATAAAACAGCACACAGTGACGCCAGGCCTTActcttgtgacatatgtcataaAGCTTTCAAGAGTAAAGGCAACATGCTGAGACATGCAATGATTCATACGGGCGAGAAACCTTATCCTTGCCAGTACTGCGGGAAAGCATTCCTTGAATCGAGTAATTGCAAAGTTCATATCAAGACAGTGCATCTTAAACACCCGGCACCGCCCCGCGTTAGGCGAAAACGCCGCCCTGCGCCACCTAGAGATCCAGCCATTTGCCATAATACATCAGCAGAATAG
- Protein Sequence
- MDELMMCGICLNMDVKMYKLQGFPLEDYYTWIVGNLLETNISHYFQFACYECAYQIEKYNSFREKCLRSQSLLIEMFQKKGKLTKDDVKSIERQKFDLCSNLTYGLQNMYTVGCVDIKQDFYIKVENNALKGDDIKIELSLEENEENETITPQSNDDEHSFTLSTEKKKTSKRLISKVASDENVNRSLKKRRQKKDSEEIEEQLKQLMKRKELPNYINSKYKCNICYKGFIDPDAFNYHLKRHDPANGSKICPICKICFVRKTAFCAHRLQHAKNYQCKTCSRVCLTLTQAKTHLEEHKGKTYSCEQCGHVTTKRSSLLTHIRLKHPSDFVCDVCGFSFVNEVGLRIHKMRHRFDAESERSSRTKKGYCESCNVHCNSHQAWKKHINSLSHKIKTDSLVCDKCDETFENSENFKLHYAALHSKAYRQHKQSKCVAKVWPSKCLHCDKMLPTTRKFYFHLRTSHPDKPYPITKNHICDVCGERFMNNSFLMYHKRTIHVDGGCSFKCAECLKSFSCKSTLQIHKTAHSDARPYSCDICHKAFKSKGNMLRHAMIHTGEKPYPCQYCGKAFLESSNCKVHIKTVHLKHPAPPRVRRKRRPAPPRDPAICHNTSAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -