Lfer016283.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453254.1:16520844-16539990[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0095 0.83 11.1 3.0 1 23 269 291 269 291 0.99 2 14 0.00042 0.037 15.3 4.1 1 23 298 320 298 320 0.97 3 14 0.39 34 6.0 2.5 1 23 324 346 324 346 0.96 4 14 0.22 19 6.8 2.2 1 23 351 374 351 374 0.95 5 14 0.011 0.92 10.9 0.2 1 23 378 401 378 401 0.92 6 14 5.5 4.8e+02 2.4 3.0 3 22 417 436 415 439 0.88 7 14 0.00094 0.082 14.2 0.4 1 23 446 469 446 469 0.97 8 14 0.12 10 7.6 2.7 3 22 496 515 495 518 0.90 9 14 0.0038 0.33 12.3 0.2 1 23 525 548 525 548 0.98 10 14 0.12 10 7.6 2.2 2 23 568 590 568 590 0.98 11 14 3.1e-06 0.00027 22.0 3.2 1 23 601 623 601 623 0.97 12 14 0.0097 0.84 11.0 3.1 1 23 629 651 629 651 0.96 13 14 1.2e-06 0.0001 23.3 3.5 1 23 657 679 657 679 0.98 14 14 1.2e-06 0.0001 23.3 0.2 1 23 685 708 685 708 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAACTTGTAATGTGTGGAATATGTCTGAATATGAATGTGAAAATGTATAAACTAGTAGGATATGCACTTGAGGATTATTATGTGTGCATTATTGGAAGTTTACTGGAGGCTAACATATCAACATATCTGCAGTATGTTTGTTATGAATGTGCTTATGATcttaaaaagtataatttatttagagaAAAGTGCCTACGAAGTCATTCCATTCTATTTGAAATGGTTCAACGGAAAGGGCAGATAAAAAAGAGTGACATCACATCAATAGACAGGCAGGAGTTGAAACTCTGTTCTAATCTTGAATATGGTTCTAATAATATGCACACAATAGAACATACCTatatcaaaaaagaaaatttgaatGATAGCTTAGAAACGATAGGAACTAACAATTTCAaagaaattcaaattaaaattgaagcTGATTTACAAGAAACAGAAGAGGATGAAACAATAACATCAAATTGTAATGATGAGGAGGATACTCTTGcaacttcaataaaaagtgaggaGACtccgaaaaaacaaaaaatcaagaaaacaaGTGAACGAAAAGTGAAGAAaccttttaaaaaaagaagattgAAGAAGAGCTTAAAAGAgGATAGTACAGGAGATACATCTGAAGGAAAAAGGAAaccgttaaaaaaaacatttggaCCAAAGAGACATCCAACTGGATTAACACCAAGAGAAAGGGAAATGGCGGATCGTATTGAAGTTGCACAACTTACGATCGAAGAACAAATGGAGGAGGTTCGGAAACGAAAAGAATCGTCAAATTACATAGAATGTAAATATAAGTGTAATATCTGCTATAAAGGATTTGCTGATACCTGTGTGTATGATAACCATATGAAACGACATGATCTACCAGGCGCTAAACACGTCTGCCCGATATGCAAGATATGTTTTCCATCGAGTAGAACTTTGAGCAATCATCGCAGGTTCCAtgagaaaatttataaatgcaaACAATGCCCTCATGTTTGTAATTCAATtaaccaAGCAGTTCTACACCAAAACGAGCACAGCGGCAAAACTTATAAATGTAAACAGTGTGATTATGTTACTGCAAAGCTTTCTTCACACTTGAGTCATGTCAGAATAAAACATCCATCGGAGTTTGTATGCAGTGCTTGTGGTTTCTCGTTTGTCAGTGAAAAGGGACTCAGATTACACAAAGCTTTGATGCACAACAAAGAAACTGGGTCAGAGAAAGGCAGTATAAATATGAGTCATTGCGAGGCTTGTGACTTCCACTGTAGCTCGCGACAAGATTGGAATAAACACGTCGCTTCTGTAGGACATAAGAtcaaaattaatgattttaaTTGTGACGTCTGTAAAATAACATTTGCCACCGGTGAAGACTTCAATTCGCATTATCGAAGTGTGCACCCTTTGCGACGTGGTACAAGCAACAAGACTAGGCAGTGCATGAATGATTCAGAAAATGGGAGTAAAAATATGAGACATTGCGAGGTTTGTGACTTCCAGTGCAGCTCGCGGCAGTATTGGAAAAAACATATGGCTTCTGTAGTGCATAAAATCAAAACCAATGATTTTACTTGCGGCATCTGTAAAGATGTGTTTGCGACCGGTGAAGATTTAAAATTGCACTATCGAAAGCTCCATCCTGTCCCACGGAGGAAAAACCAAAGCCAACCCGGTTTATCAAAAGAGTGGCCTAGGAAGTGCGCGCATtGCGACGAAATGTCATCGACCATACGCAAGTACTACTACCACATAAGAACGTCGCACCCTGACCAACCAGATCCAGTGGTAAAGAACCATATCTGTGATGTTTGCGGCAAACGTTTCAGGAACAACACATTGCTACAGTACCACAGGCGGACACATTTTGAAGGGAGATCTTTTAAGTGTACTGAGTGTTCTAAGTCGTTTTTCAGCAAAACGATCCTTCAGCTACATAAAAGTTCACACAGTGATGCCAGGCCATACTCTTGTGATGATTGTCATAAAGCATACAAGACCAAAAACAACTTACGGAGACATTTACTAAGTCACACAGGGGAGAGGCCTTATCCATGCAACTACTGTGGGAAGGCTTTTGCTGATTCAAGCAATCGCAGGATTCACATAACAACAGTGCATTTTAAGATGCCCGTACcctataaaactaaaaaacgtCATAGGTTGCCCCGTGATGAACCAGAACGCATTTAG
- Protein Sequence
- MEELVMCGICLNMNVKMYKLVGYALEDYYVCIIGSLLEANISTYLQYVCYECAYDLKKYNLFREKCLRSHSILFEMVQRKGQIKKSDITSIDRQELKLCSNLEYGSNNMHTIEHTYIKKENLNDSLETIGTNNFKEIQIKIEADLQETEEDETITSNCNDEEDTLATSIKSEETPKKQKIKKTSERKVKKPFKKRRLKKSLKEDSTGDTSEGKRKPLKKTFGPKRHPTGLTPREREMADRIEVAQLTIEEQMEEVRKRKESSNYIECKYKCNICYKGFADTCVYDNHMKRHDLPGAKHVCPICKICFPSSRTLSNHRRFHEKIYKCKQCPHVCNSINQAVLHQNEHSGKTYKCKQCDYVTAKLSSHLSHVRIKHPSEFVCSACGFSFVSEKGLRLHKALMHNKETGSEKGSINMSHCEACDFHCSSRQDWNKHVASVGHKIKINDFNCDVCKITFATGEDFNSHYRSVHPLRRGTSNKTRQCMNDSENGSKNMRHCEVCDFQCSSRQYWKKHMASVVHKIKTNDFTCGICKDVFATGEDLKLHYRKLHPVPRRKNQSQPGLSKEWPRKCAHCDEMSSTIRKYYYHIRTSHPDQPDPVVKNHICDVCGKRFRNNTLLQYHRRTHFEGRSFKCTECSKSFFSKTILQLHKSSHSDARPYSCDDCHKAYKTKNNLRRHLLSHTGERPYPCNYCGKAFADSSNRRIHITTVHFKMPVPYKTKKRHRLPRDEPERI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -