Lfer010605.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- znf711
- Assembly
- GCA_949709985.1
- Location
- OX453248.1:21407010-21420988[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9 7.8e+02 1.7 0.2 2 23 6 27 5 27 0.90 2 12 5.3e-05 0.0046 18.1 1.2 2 23 1119 1140 1118 1140 0.96 3 12 0.0049 0.42 12.0 3.2 1 23 1146 1168 1146 1168 0.98 4 12 0.00081 0.071 14.4 4.9 2 23 1175 1196 1174 1197 0.95 5 12 0.00053 0.046 15.0 1.7 1 23 1207 1229 1207 1229 0.98 6 12 0.0011 0.097 14.0 0.7 3 23 1236 1257 1235 1257 0.97 7 12 0.076 6.6 8.2 0.1 2 23 1273 1293 1272 1293 0.97 8 12 5e-05 0.0043 18.2 1.2 1 20 1299 1318 1299 1321 0.92 9 12 0.0013 0.11 13.8 0.4 1 23 1329 1351 1329 1351 0.98 10 12 0.006 0.52 11.7 7.2 1 23 1357 1379 1357 1379 0.98 11 12 1.2e-06 0.00011 23.3 1.4 1 23 1385 1409 1385 1409 0.98 12 12 0.0017 0.15 13.4 4.2 1 23 1415 1437 1415 1438 0.95
Sequence Information
- Coding Sequence
- ATGGAACAGCAATTACAGTGCCCGGTTTGTACACTCTTTTTACATGGTGGCATCAGTTTGGAAAACCACTTGGATACACATCCTAAAGACCAGGTCATCAAAGCATTGTGTACATTATCTGGGGCAAGAAGTAATTATGGCAGTCGAAGTACGACTCCCATGCATTCTGAACGTTCATACAGAAGTCGATCACGCACTCCTGCTGTGGATGAGAGCAGGTGGAATAGCCCACACACAGATGTCGATCGTGACCGTTACTGGCCAAGAAGCTTAAGCAGATCATCTAGACCAGCACCAAGCCTTCGTACAAATACTCCTTCCGACTTAAAAATTGGTGATATAAATTTTGAGCACTCAAATATGGGATCAGGTCCTGTAATGTGTGCAAatgatttttctaataaaactgCTAATTCATACACACCAGATGTACATAACTCTGATTTAGACCATCATTATGTGTATATACAAGAGCAACCAGAAGAGACTGAAATGAAGTATTCTAGAAGTGCCGAATATAATTCTTATAACAATGCAAATAatatgttcacatataatatgCAAGTGCCACCGCCTTCTGGGGTACGACTACAAACTTCTTTGGTACCTGCAGTTAGCAAAAGACACAGtgattttgttaatataatacCGAGTAATAAAAGGGGTAGTGATTTTATAAAACTAGTGCCGAAACCTGGAAATATTGCTTATGTTAAAACCAATGTGGGATCTGTTCAATACATCACTCCAAATGTTAAGCCGATGCACGTCATGATGCCCAGTGCTAAAACTTTCATGCAGTCTCAACAGAACACCCAAAATAATATCATCATGTCAAGTAATGCAGCAGCCACTCAAACAACTAAACCGGCGACCACTTCAATATTATCCAACCAGTTTGGCCAAATTTCATCTGCATCATTTACACCTAACACAACAGTTGTTACACAAAATTCTCAAATAATCTATAGAGAGATGGTCCATAATATTGATGGAAAACCTTTTATTTCAACAATGCCAACCATGTTGAATAATGAAGATATGGCCAATGTCTCGCAACAAAATTCATTGTACCAAAATGTGATGGTTGTTGACCCCTATGGTGCAACTTCTTGCATGTATACTCCACAACCATTGTTACCACAAGTGACTGGCAGTTCTACCTTCAACACTAGTCTCACTGTCACAACttcacataaaaataacaacagCAAAGTTATGGAGTTTAATGAAAAGAATGATACAAATAAAAACCTCATAATAGAGGTGAGTCCGATAATTTCCCAGCCACCTGAGTCCTCAAATGAACCCTCAACTAGTAATGGTCCCGTAAGACCAGAGCAAGCTGTAGAGCAGAGATCAAAAGAAACTATAACATCTATGGATGTAAACAGTCCTGAAAAATCTGATAACCAATCAGAAACATCAATCACCAAGAAAGGGCTCAAAATTCTTAGCAACATAAAAGTTGAGGTTCCAGTACAACATCATAAAAGTCTTTTGAATACCGTCGTAGATCTTACTGGAAATGTAGAGCAAGAGTTTCCTGAAGCTACTCACACTGCTGATCATTGTAGTTTTGAAAACAGAGCACAGACCATGGCTAATAGTTATAATGTAATACCTACCACTTCAAATGATGACCCCACACATGTTGCTAATACTTTCtctgtaataaaaaatgtgggTAATCCATCAAATAAAGATCAAAAATGTAACAGTATGGACAACAATAGAATCAATGAGGTAGATTCTTCAGACAGCTGCCCTGTGCCTGATCTTATATGCAACGAGAAACCCTCAATTTCACCATGTAGTGAACTATCAGAGAGCAGAGAAAACTCAACAGATCATACTTCTATATCTTTCCAAACCAATGTGactgaaaacaaacaaaacaatgaaTTACAACTCACAAGATCTGAGAAGAAATCGCCAAAGACTTATCGGAACAATCctttaaagttaaataacatctttgttaaaaaacacaaaaaggtATTGCAGATCAAAAATGCTAAAACTTGTTTGCCAGGCAACACATCTAGAAAGAGTGAAGTACTGGCAGTGCCTTCTACATCCACATCAAAATGGCCTGAGACTTTTACTCATTCAAAACTTCAACAAAATTCCTTTAAAGTAGAATTTGAGACAAGAGACATAGAACCATACCTGACTGCAAATGTCAAGACAATTCATGAACATCAAGATCAGAATAATTTTGATGCTGATACCGAGGAACAGTCTATGGATATTGAACCTGTAACACCGTCatctatatgttataaaaaccaGTTCCAATCAGGGACTGATGTAGTACATGTTAAAGATGAAATGAGTGGCAGCAATGAGAACTTCAGCATAAATCTGGATGCCAATCGGGATCTAACCCAATTAGAACCTGTGAGACCTGTCAATGTCATCGCATATGGAAATATGAGTTCTGATAACGAAGGAGACCGAGATTTGTTAGAACTAGAGGCTGCAtccaaaacaaaacatttcGTTAATATGATGACCGAAAATTATTTCGGTGACAATTTTTATGCTGATTATTTTACTCCAGACCGTGTGGAGGCATTCGATGCTGTTCGAGATGCAAATTATTCTAAAGATCAGCAAAAAGACGAACGTTGTGATGGAGTTTACTTATGGGGTGAACCTTCTCAAAAAGACTATATAATTCCTAATTTCATTCATGACAGCTACAAGATTGCAGAGAGTGCTACATGTTCTAATTACACACTCAACACCGAAGGAGTCTTAGAAGAGGTTGAATTAGATGGTGCTGATAGGGAGCTTGAAGTGGAGGGTGATGCTTGTGAAAGAGACAGCAAGGCGGATGTATTGAGTGAAAGCAGAAGCGAAAGCGAGATAGCATTAGATATATCAGCCGATGAACGCATGCCTCCACGTGGTGAACTCAGTGGCCAAGAGAGCAATGGTGATATGGACGCACCTTGGACTGggcAGGAGGTAGCATCGTCAGCGTCCTATGACTTAATAGCACGTGAAACCTGGATGTCTGATGGTTCCGAAGTAGATGTTGCAGAAAAGCAGGACAATCTACTTCGTTCGGGTCACATCCTTTTGAATGCATTCCTTCACTGTGTTGGTTTGACCAACACCTCAAACTGCTTGAGGTGTTATACTAAAGAGGATGTACATCATGTTCTAGAGGTGTGCGTCCTGAACGAGGAACTGAGGCAAGAGCTGCTTGAAAAGATGGAGTATGATAAAAACAATGTGGGAGTGTTTCATACCTTTTTGTCAGATCTGACGTGTGATGGTGCCTTACAGGTGGATCAACACAATGATGTACAGTTCCACGCCCACCTCAAAATTCACCCCTTAGAGTGTCTCACCTGCGGGAAGTGCTTCTTCAAGAGAGCCAACCTCGCGCTCCATATAAGAATACACTTGGGCATCAAGAATTACAAATGCGAAGTGTGCGAAAAGCGATTCCTGACAAAAAACAAATTGCAAGAACATCACAACATCCACACAGGACGCTCTCCTGTCAAGTGCACCCTCTGTGATGAGACTTTCCGAAGGCACTCCAACATGATACAACACAGGGACCGCCACCATCTCCACAAAAAGAAGAAGATCCGCGACTTCGTGTGCCAGCAATGCGGTGAAGTGTTCCACTCCCGCCGCAAGCTGCTCTGGCATAGAGAGACCCACGAGGAAAAACCCAGGGCGTGTCCTTATTGCAGTGACAAATTTGTCCACTCGGCATCTTTGACCCGTCACGTGAGGAGAGCACACAACGCGTACTACGTGCCGGACGATAGGCGGAGCATAGAAAACGTACCTTGTCCTATATGTAAACAGaTATATCTGAAGACTAACATCGAGGTGCACATGAAGACGCACGCCGGCAAGAAACCGTACCAATGTGTTATATGTAACAAAAACTTCACTACCAAATGGAACTTGAAGCTGCACCGATGGACCCACATGAGCCGCTCCTCAAAACCATACAAATGTAGTCTATGCAAAGGGGCGTTTATTAGGCAAAACGAATATATCTCTCATATGAACGCTCACAAATCGGTACGCCCTTACACATGTAACTATTGCGGTTGCCAGTTCATAAGGAAATACAATTGTCAAAGACACGTAAGAGAGCACGAGAACGCGAAGAGGTATGTATGCAAGGTAGCAGAATGTGGTAAGTCGTTCCACCGTAGTTACTATCTCACTGAGCATATGCGCGTGCACAGCGGGGCGCGTCCTTTCGCGTGTTCCATATGTGGAAAGACATCGAGCAATAAGTCGAATCACAACAAACACGTGAAAATACACCACACGAGAGAGCCTGTAGCGACCgaagcgtaa
- Protein Sequence
- MEQQLQCPVCTLFLHGGISLENHLDTHPKDQVIKALCTLSGARSNYGSRSTTPMHSERSYRSRSRTPAVDESRWNSPHTDVDRDRYWPRSLSRSSRPAPSLRTNTPSDLKIGDINFEHSNMGSGPVMCANDFSNKTANSYTPDVHNSDLDHHYVYIQEQPEETEMKYSRSAEYNSYNNANNMFTYNMQVPPPSGVRLQTSLVPAVSKRHSDFVNIIPSNKRGSDFIKLVPKPGNIAYVKTNVGSVQYITPNVKPMHVMMPSAKTFMQSQQNTQNNIIMSSNAAATQTTKPATTSILSNQFGQISSASFTPNTTVVTQNSQIIYREMVHNIDGKPFISTMPTMLNNEDMANVSQQNSLYQNVMVVDPYGATSCMYTPQPLLPQVTGSSTFNTSLTVTTSHKNNNSKVMEFNEKNDTNKNLIIEVSPIISQPPESSNEPSTSNGPVRPEQAVEQRSKETITSMDVNSPEKSDNQSETSITKKGLKILSNIKVEVPVQHHKSLLNTVVDLTGNVEQEFPEATHTADHCSFENRAQTMANSYNVIPTTSNDDPTHVANTFSVIKNVGNPSNKDQKCNSMDNNRINEVDSSDSCPVPDLICNEKPSISPCSELSESRENSTDHTSISFQTNVTENKQNNELQLTRSEKKSPKTYRNNPLKLNNIFVKKHKKVLQIKNAKTCLPGNTSRKSEVLAVPSTSTSKWPETFTHSKLQQNSFKVEFETRDIEPYLTANVKTIHEHQDQNNFDADTEEQSMDIEPVTPSSICYKNQFQSGTDVVHVKDEMSGSNENFSINLDANRDLTQLEPVRPVNVIAYGNMSSDNEGDRDLLELEAASKTKHFVNMMTENYFGDNFYADYFTPDRVEAFDAVRDANYSKDQQKDERCDGVYLWGEPSQKDYIIPNFIHDSYKIAESATCSNYTLNTEGVLEEVELDGADRELEVEGDACERDSKADVLSESRSESEIALDISADERMPPRGELSGQESNGDMDAPWTGQEVASSASYDLIARETWMSDGSEVDVAEKQDNLLRSGHILLNAFLHCVGLTNTSNCLRCYTKEDVHHVLEVCVLNEELRQELLEKMEYDKNNVGVFHTFLSDLTCDGALQVDQHNDVQFHAHLKIHPLECLTCGKCFFKRANLALHIRIHLGIKNYKCEVCEKRFLTKNKLQEHHNIHTGRSPVKCTLCDETFRRHSNMIQHRDRHHLHKKKKIRDFVCQQCGEVFHSRRKLLWHRETHEEKPRACPYCSDKFVHSASLTRHVRRAHNAYYVPDDRRSIENVPCPICKQIYLKTNIEVHMKTHAGKKPYQCVICNKNFTTKWNLKLHRWTHMSRSSKPYKCSLCKGAFIRQNEYISHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHENAKRYVCKVAECGKSFHRSYYLTEHMRVHSGARPFACSICGKTSSNKSNHNKHVKIHHTREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -