Lfer023348.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453261.1:14694218-14698668[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.12 10 7.6 0.2 5 23 339 357 338 357 0.96 2 12 0.0046 0.4 12.1 0.4 3 23 365 385 363 385 0.94 3 12 1.6 1.4e+02 4.0 0.5 3 23 394 414 392 414 0.89 4 12 6.2e-07 5.4e-05 24.2 1.2 2 23 420 441 420 441 0.98 5 12 0.0041 0.35 12.2 3.4 1 23 447 469 447 469 0.98 6 12 0.0055 0.48 11.8 0.3 1 20 473 492 473 494 0.93 7 12 0.014 1.2 10.5 1.5 1 23 527 550 527 550 0.93 8 12 0.0038 0.33 12.3 0.1 3 23 559 579 558 579 0.98 9 12 0.00021 0.019 16.2 0.2 1 23 590 612 590 612 0.97 10 12 8e-05 0.0069 17.6 4.5 1 23 618 640 618 640 0.98 11 12 0.003 0.26 12.6 0.3 3 23 648 668 646 668 0.98 12 12 0.004 0.35 12.2 3.0 1 23 674 697 674 697 0.96
Sequence Information
- Coding Sequence
- ATGGATGTTTTGTCAAATCTATGCCGATGCTGCCTCGCCCCTGATTCAGAAGTCTCTATATTTGATAGTACTCTTAACGTGAAGCAAAGATTCCTAGAGACCACTTCTATTGAGGTAAAGGATGATGACGGTCTGCCCCAGAAGCTTTGTGATTCGTGTTATGCACTTATGAACTCTGCATACCAGTTCAGGAAGCAATGCATCAAGATGGATGCTGAATTAAAAGTGCAACTACAAGCCCTCTTGAAGGACTCCGCTGTGAGCAATGTTAATAATTCTTCAAAAAGTGATGATTTTGAAACCAACCCGTTAAAACAACTAGAAGCAATAATTAAAACTGAACCAAATGACagtgatgatgattattattatgtactagtCATAGACGACCCTAAAGACAatgaaaaggaaaaagaaaataaatctaTCAGTGTAAAACttgataatgtaaataaaattaagaaagaaCCTGTTGAGCCCAAATTAAACATTATCTCAAATGAAGACAGTTTCGAAAATTCCATAGATTCTTTTTTAGTGTCTGAAACAAAAATTCCAATTAATGTGCCGGCTACCATCTTGCAAAATGAAGAGGATAGCAACTTAGATCCACCCATGGACATTGATGACCAAGATAATTCCAATGACCATGATCTGGTAGAACCCAGTGAAGATTCCCAAGAAAAAACGGCAGATACCGTTAAGACTATTAGCTTAATCCAAGATAAAGCACAAGCCAATAAATTCATCAAAATATTGACTAGTTCTGCTGCTGATGGTACAATAGTCTTAAAAGGAGCAGATGgtcaaaaagtagcctatttaACTGATACACAGCTAATGACAAACGATGGAGACTCTCTGTCACAGGATGAAGTGATTGTGTGCGAAGGTGATGAGTCTCAGTTTCATATAGTCAAATGTGAAGGTTCAGAAATAGTTATTGAATATCCTGACGGAGCACAAATATCTACTATGTTAGAGCAAGATGAAGAATCTACTTCATATTTATGTGAATGTGGCGAACAATTTGATGAATATGCTGACTACCAGAAGCATCAATTCACACATAACCCTGCTGGTGACCATCTCTGCAACATGTGCGGTAAAGGGTTTGAATCCCAAGAAATTTTAACCGGTCATATGCTTCTGCACAATATAACTGGCCTTCTGATAATGTGCCCTTTCTGCAATCAATTAATAAGAAGAAATACTCTTACACAACACATCAAGTATGGACATAATAACATCAAGCCACGCTGCAAGGTTTGCTTCAAAACATTTGCTAATCCCAATAATTTGAAACGGCATATGATGATACACAGTGGTGTCAAACAATTTGAATGCGACATCTGCTTTAAAAGATTCCATCAGAAGATAACCATGCAAACGCATAGGCTTATACACATCTCTCCGTTTACTTGTACAGGATGTGAACAGACGttcgaaaataaaatgcaaCTAGACGACCACAAGGAAAACGATGAATGCACCAAAACGAgaataattaaagttaaagaagAGCTAACTAAAACTTTAAAACAAGAATTGACCAACCCTGAAGGTGACGTAGTGGGATATTCCTGCTCTTTGTGCAAGAAAATGTTCTCATTAGAATCTGTGTTTGAACACCACGTTGAGAACTTACACATGGTCGACCCTATGGAACTATTGTGTTCCGAGTGTGGGGAAGTTTTACCATCTAAAAAAGAGATGCAATCCCACATAGTGACGCATAAGCATGCCAAAATGAGGAACATGAAAAGATTTGACTGCAGCATCTGTGGAAAAGGTTGTGCTAGTCAAGCTATGCTGGTAATGCATGAACGTGTCCATACTAATGAAAGACCATTCCCGTGCCAACTGTGTTCCTTGAGATTCAAAACAAAAACCCATCTAAGAACCCACCAATTGACACATACGAGAGAGAAAAAGTTTGGGTGCTCGGTGTGTATGAAATTCTTTGCACTGAAGGGCAATCTTGTTGTACACTTAAGGACACATACCGGTGAAAGACCTTATGTCTGTCACTTATGCAATGACGCTTTCATAGACTCTAAATATcttaaaaagcataaattaaaaaaacatgctATAGAAAACATGCCCTGGAATAAATATTGA
- Protein Sequence
- MDVLSNLCRCCLAPDSEVSIFDSTLNVKQRFLETTSIEVKDDDGLPQKLCDSCYALMNSAYQFRKQCIKMDAELKVQLQALLKDSAVSNVNNSSKSDDFETNPLKQLEAIIKTEPNDSDDDYYYVLVIDDPKDNEKEKENKSISVKLDNVNKIKKEPVEPKLNIISNEDSFENSIDSFLVSETKIPINVPATILQNEEDSNLDPPMDIDDQDNSNDHDLVEPSEDSQEKTADTVKTISLIQDKAQANKFIKILTSSAADGTIVLKGADGQKVAYLTDTQLMTNDGDSLSQDEVIVCEGDESQFHIVKCEGSEIVIEYPDGAQISTMLEQDEESTSYLCECGEQFDEYADYQKHQFTHNPAGDHLCNMCGKGFESQEILTGHMLLHNITGLLIMCPFCNQLIRRNTLTQHIKYGHNNIKPRCKVCFKTFANPNNLKRHMMIHSGVKQFECDICFKRFHQKITMQTHRLIHISPFTCTGCEQTFENKMQLDDHKENDECTKTRIIKVKEELTKTLKQELTNPEGDVVGYSCSLCKKMFSLESVFEHHVENLHMVDPMELLCSECGEVLPSKKEMQSHIVTHKHAKMRNMKRFDCSICGKGCASQAMLVMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCHLCNDAFIDSKYLKKHKLKKHAIENMPWNKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -