Basic Information

Insect: Luffia ferchaultella
Gene Symbol: -
Assembly: GCA_949709985.1
Location: OX453254.1:16497193-16518935[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.1e-05 0.007 17.6 1.3 1 23 271 293 271 293 0.99

2 14 0.064 5.6 8.4 6.8 1 20 300 319 300 322 0.90

3 14 0.032 2.8 9.4 3.6 1 23 326 348 326 348 0.98

4 14 0.005 0.43 11.9 3.6 1 23 353 376 353 376 0.98

5 14 0.013 1.1 10.7 0.5 1 20 380 399 380 403 0.84

6 14 1.1 94 4.6 1.5 3 22 419 438 417 441 0.88

7 14 0.00034 0.029 15.6 1.9 1 23 448 472 448 472 0.91

8 14 0.98 85 4.7 1.7 2 22 500 520 500 523 0.89

9 14 0.002 0.18 13.2 0.3 1 23 530 553 530 553 0.97

10 14 0.35 31 6.1 1.2 2 23 579 601 579 601 0.97

11 14 1.8e-06 0.00015 22.8 3.2 1 23 612 634 612 634 0.97

12 14 7.2e-05 0.0063 17.7 2.9 1 23 640 662 640 662 0.97

13 14 4.7e-05 0.0041 18.3 3.1 1 23 668 690 668 690 0.98

14 14 2.6e-06 0.00023 22.3 0.4 1 23 696 719 696 719 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.1e-05	0.007	17.6	1.3	1	23	271	293	271	293	0.99
2	14	0.064	5.6	8.4	6.8	1	20	300	319	300	322	0.90
3	14	0.032	2.8	9.4	3.6	1	23	326	348	326	348	0.98
4	14	0.005	0.43	11.9	3.6	1	23	353	376	353	376	0.98
5	14	0.013	1.1	10.7	0.5	1	20	380	399	380	403	0.84
6	14	1.1	94	4.6	1.5	3	22	419	438	417	441	0.88
7	14	0.00034	0.029	15.6	1.9	1	23	448	472	448	472	0.91
8	14	0.98	85	4.7	1.7	2	22	500	520	500	523	0.89
9	14	0.002	0.18	13.2	0.3	1	23	530	553	530	553	0.97
10	14	0.35	31	6.1	1.2	2	23	579	601	579	601	0.97
11	14	1.8e-06	0.00015	22.8	3.2	1	23	612	634	612	634	0.97
12	14	7.2e-05	0.0063	17.7	2.9	1	23	640	662	640	662	0.97
13	14	4.7e-05	0.0041	18.3	3.1	1	23	668	690	668	690	0.98
14	14	2.6e-06	0.00023	22.3	0.4	1	23	696	719	696	719	0.97

Sequence Information

Coding Sequence: ATGGATGAACTAATAATGTGTGGAATATGTCTAAACACCGATGTGAAAATGTACAAACTACTAGGTTATGCACTTGAGGATTATTATGTATGCATTATTGGAAATTTACTTCAGgcTAACATTTCACACTATCTTCAGAATGTTTGTTACGAGTGTGCTAAtggtcttaaaaaatataacacatttaGGGAAAAATGTCTCAGAAGTCAAtcattattatatgaaattgtTCAACAGAAAGAGcagATAAGAAAAAGTGATATCAAATCGATAGACCGGCAAAAGCTGAAACTCTCTTCTAATCTCGGatatggttttaaaaatattcacactATGGAACTTACCTATATCAAAATAGagaataatttgaataattccATGGAAATGTTTAAAACTAACAACTCAAAAGATatgattgaaattaaaattgaaccCAAATTCTCACAAATAGAAGAAGATGAAGGAAGGGTGTTAGATTGTAATGAAGAGaaaaaatctttcaaaactTCCATAAAAAGTGAAGAGACTCCAAAAAAACTCAGAGTTAAAAAAACAAGTGAACAAAGAGTGAagaatccaaataaaaaaaaaagattgaagAAGAGTTTAGAAgagGATAGTTCAGGAGACACATCTGAAGAAAATTCTGAAccactgaaaagaaaaaaaggaccGAAGAAGCATCCAACTGGATTAACACCACGAGAAAGGAAAATGGCAGATCGTTTTGAAATTGTTAAGCTGAcgATAGAAGAACAATTGGAGGAggttcgaaaaagaaaaaaaacatcaaattacaTAGAATGCAAATATAAGTGTGATGTCTGCTACAAAGGGTTTACAGATTCCAGTGTGTATGATAACCACATGAAGCGTCATGATTCGCTTGGCGCTCAACACGTCTGTCCAATATGCAAGATATGTTTTGAAACGAGCAGGACTTTGACAAGTCATTGCAAGTTCCatgagaaaaattataaatgtaaagaaTGCTCTCACGTTTGCAATTCCTTgagcCAAGCAGTTCAACACCAAAACGAACACAGTGGTATAACGTATGAATGTGAACACTGTGATTATGTTACTACaaaatattcaTCTTTCTTCGGTCATGTCAGGAAAAAACATCCGTCGGGCTTTGTGTGCAATATTTGTGGTTTCTCGTTTGTCAGTGAAAAGGGACTCAAATTTCACAAAGCGTTGACACATAACAAAGAAACTGAATCAGAAAATGGCAGTATAAATATGAGTCATTGCAAGGCATGTGACATTAATTTCCATTCACGGCAGGATTGGACTAAACATGTAGCTTCTCTAGTGCATAAGATGAAAACCAATGATTTTAGttgTGATATCTGTAAAGAAGCGTTTACGACCGCTGAAGATTTCAAATCGCACTATCACACCTTAAGACATGGAGCAACTAAAAAGAAGCCAACTGTATCCAGGCCTAAGAAAGCCATGAATGAGTCAAAAAAGGATAGTAAAGTCATGAATCGTTGCGAGGCTTGCGACTTCCAATGCAGCACACGGCAATATTGGAAGAAACATCTGGCTTCTGTGATGCATAAAATCAAAACCAATGATTTTACTTGTGATATCTGTAAAGGACAATTCGTGACCGCTGAAGACTTCGAATCCCATTATCAAATGCTGCATCCGATGGCAcataacaagaaaaataaacCCAGAGCAAACAGAAAGAAGCCCGTTTTATTGAATGAATGGCCTAGGAAGTGCAACAGTTGCGACAAAATGATACCGACCATACGCAAGTACTACTACCACTTAAGAACAACGCACCCTGACCAACCATACCCAGTGATCAAAAACCATATCTGTGATATTTGCGGCAAACGTTTTAggAACAACACATTGCTACAGTACCACAGACGGACCCATTTCGAAGAGAAGTCTTTCAAGTGTACCGAGTGTTCGAAGTCGTTTTTCAGCAAAACAACCCTTCGTCTACACCAAAGTGCGCACAGTGAAGCCAGGCCGTATTCTTGCGATATTTGTCATAAAGCTTACAAGACTAAGAACAACTTAGGGAGACATTTTATGAGTCACACAGGCGAGAAGCCTTATCCGTGCAACTACTGTGGAAAGGGTTTCACTGATCCGACCAATCGTAGGACTCACATTACGACTGTACATTTCAAGATGCCCGCACCTTATAAAAGTCAAAAACGTCGGCGACCACCCAGCGATGTACCAGAATGCTCATAA
Protein Sequence: MDELIMCGICLNTDVKMYKLLGYALEDYYVCIIGNLLQANISHYLQNVCYECANGLKKYNTFREKCLRSQSLLYEIVQQKEQIRKSDIKSIDRQKLKLSSNLGYGFKNIHTMELTYIKIENNLNNSMEMFKTNNSKDMIEIKIEPKFSQIEEDEGRVLDCNEEKKSFKTSIKSEETPKKLRVKKTSEQRVKNPNKKKRLKKSLEEDSSGDTSEENSEPLKRKKGPKKHPTGLTPRERKMADRFEIVKLTIEEQLEEVRKRKKTSNYIECKYKCDVCYKGFTDSSVYDNHMKRHDSLGAQHVCPICKICFETSRTLTSHCKFHEKNYKCKECSHVCNSLSQAVQHQNEHSGITYECEHCDYVTTKYSSFFGHVRKKHPSGFVCNICGFSFVSEKGLKFHKALTHNKETESENGSINMSHCKACDINFHSRQDWTKHVASLVHKMKTNDFSCDICKEAFTTAEDFKSHYHTLRHGATKKKPTVSRPKKAMNESKKDSKVMNRCEACDFQCSTRQYWKKHLASVMHKIKTNDFTCDICKGQFVTAEDFESHYQMLHPMAHNKKNKPRANRKKPVLLNEWPRKCNSCDKMIPTIRKYYYHLRTTHPDQPYPVIKNHICDICGKRFRNNTLLQYHRRTHFEEKSFKCTECSKSFFSKTTLRLHQSAHSEARPYSCDICHKAYKTKNNLGRHFMSHTGEKPYPCNYCGKGFTDPTNRRTHITTVHFKMPAPYKSQKRRRPPSDVPECS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -