Lfer026071.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453265.1:5614660-5624860[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.2 18 6.9 0.5 1 23 119 142 119 142 0.89 2 16 0.00019 0.017 16.4 0.8 2 23 168 190 167 190 0.94 3 16 7.4 6.4e+02 2.0 7.8 1 23 212 234 212 234 0.97 4 16 0.021 1.8 10.0 1.6 1 23 238 260 238 260 0.96 5 16 0.0016 0.14 13.5 1.1 1 23 315 337 315 338 0.95 6 16 0.0036 0.31 12.4 0.5 2 23 364 386 363 386 0.89 7 16 0.003 0.26 12.6 0.8 1 23 408 430 408 430 0.97 8 16 0.00071 0.062 14.6 0.3 1 21 434 454 434 456 0.91 9 16 0.0057 0.5 11.8 4.3 1 23 511 533 511 534 0.94 10 16 0.00098 0.086 14.2 0.3 2 23 560 582 559 582 0.95 11 16 0.019 1.6 10.1 5.5 1 23 604 626 604 626 0.99 12 16 0.00038 0.033 15.5 0.1 1 23 630 652 630 652 0.97 13 16 0.049 4.2 8.8 1.2 1 23 657 680 657 680 0.91 14 16 0.00031 0.027 15.7 0.9 1 23 686 709 686 709 0.96 15 16 0.01 0.89 10.9 0.1 2 23 717 739 717 739 0.94 16 16 0.0064 0.56 11.6 0.2 1 23 745 768 745 768 0.97
Sequence Information
- Coding Sequence
- ATGACCTCGATCAAGATTCTCGATACTAGGTATAATGTTGGAATACAAAATATCTCAGGAAAAAAGACTGAAAACCCCATCTACTTGTCCATCAAACCTGCAAGATTAATTGGTGAAATTAAAAGAAGAGATATTAGAGCCATTCTTCGTGTGGCTCTCGGGGCTGTCCCAGCTGTCGGTCTAAGCACGTCGTGCTGCAACCGTGTACCCGGCGGCTATGgtGAAACGACCAAAACCTTTAAAGGGCTAGACGCACAACACGAAGATTCTTCCGTTTATAGTATAATAAAGAGAAACGCGTCTATTATCATAGACAACTCTACGATCACACCTTTCAAAtgccacaaaaataaatttttctgtttttattgcGGCGAAAAATACGCCGATCCCAGGCGTATAAGAGAGCACACAATCGAACAACACGAAGAAGCCAAAACTTTGACTCTAATAGAGAAATATGGCAAATACAATTTAGTTAATGTAGACGTGGCGGAAATGAGTTGTAAAAGATGCGACGAAAGTTTCACGAGCTTAACCGATCTAAAGAATCACCTTATAAACTCGCACGGAGAACAAATAAACGCAAATTGCGACGACGGAGTCGTACCTTTCGATTTCGGTATGGAAGATTTCTGTTGCTACATTTGTCGAAAGCGACACGACACGTTCTTGAAGTTGAATAACCACATGAGAACGCACTCTCTACGTTACGTTTGCGAAACTTGTAGAAAGGGTTTCGTATCTTTTAGACGTTTGCGACAGCACTTTGGTACTCATGCGACGGTTGAATTCAATCGGATCGGCGAAACGACTGAAACAGTTGAAGGGATGAAAGTGGAACGTGATGGTCCTTCTTTTAACAGTAGTATAATAAAGAAGAACGCGTGTACTATCATAGAGAATTCTAACGTTACGCCTTTCAGGTGGCACAAGAGTGGATTCCGTTGTTTTTATTGCGACGCGAAGTTTGCTGATCCTGGGCTTATTAGAAAGCACACGATGGAACACCACAAAAGAGCCAAAGCTTTGCCTCTGATTAAAAACTTAGGTAAATACGATTTAGTTAAAATAGACGTAGCCGATATGAGCTGTAAACTATGCCAAGAAAATTTCACAAGCTTAACCGATCTGAAGAATCATGTTACAGATGTACACAGACAAACAATTAACAAAGAGTTCAGCGACGGCGTGATCCCTTTTCACTTCGATACTGAAGTCTTTAATTGCTACATCTGTAAGAAGGACTTCGACGCGTTCTTCTCTTTGAACGTCCACATGAATGTACACTTTCACAATTTCGTTTGCGACACTTGTGGTAAAGGTTTCATTAGTCCTAAACGTTTGAAACAGCACTTCGGTGCTCACATGAAAAACAAGTTGCATTGCACCGGGACAATGACCAAAATGTTTAAAGCGATAAACGTGCAAGACGAAGACCCTTTCGTCAACATGAGCGCGATAAAGAGAAACTCGTGTATCATTATAGAAAACTCCACAGTTAGACCTTTCAAATGcttcaaaaatgtatttttctgtttttattgcGACGAAAAGTTCGCAAACCCCAAACATGTTAAAGAGCACACATCAGTACATCACGAAGAGGCTGAAGTTATGACTCGGGTCGAGAAATCTggaaaatacaatttcattaaCATAGACGTGGGGGGGATGAGCTGTAAAATATGTCGCGAAGATTTCACAAGCCTAACCGATCTGAAGATTCACCTAATGAACGTAcacgaacaaaaaataaacctaGGGTGCAGCGACGGCCTCATCCCTTTCAATTTCGATACGGAAAATTTCACTTGTCACCTTTGCGAAGAACAGTTCCACGTGTACCCCTTGCTGAACCATCATATGAATACGCACTTCCAGAATTATATTTGCGATACATGCGGAAAAGGCTTCGTGTCTCCTAACCGTTTGAAGGGACACCTCGCCTCTCACGCGACGGGAGAATTTCCTTGCTCTATTTGTAACATGGTATTTACGAAGTCACTTACGCGCAGCGCGCACCTTAACGCATGCCATAATGCTTCGAAAGGATTCAAATGCGCTTACTGTCCTGAAGTGTTTAATACTTCTTCAAAGAGAAATCTGCATCAGAGAGACTTACACAATAAGATTCTATTGAAGCCCAAATGTCCGGTGTGCGCGAAGACGTTCAATACACCCGCTATGAAGAACATACACGTAAAAGGAGTCCATTTAAGAAAGGCGGTTTACAGTTGTGACGTTTGTGGTGATAAGTTTATTGCGAGAAGGAATCTGAGTGTACACAAAAGGGTGGTACACAAAGAGCAGAGGATCCAATGTGATATTTCTAAGTCTGAGCCCAAGTCGGTGTCTGAGCCTAAGCATGAGGATCGTTTCGTACGCGACCACGCACTAAGAAGAATGGGTCGCCAGGCAGATGCCAACAAGCCCAGACCAATCCTTGTCAAGTTTCTGGATGTCGAAGTACGTGACAAGATCTGGTTTGCCAAGACTAAGTTTGGGGGCACCGGCATCACAGTGTCGGAATTCTTAACTAAATCGCGGCACGAACTCTTCTTGGCTGCACGTGAAAGATTCGGCGTGACGAAGTGTTGGACAAAACATGGGCATATATTTATTCTGGGACCTGATGATACTCGGCACCGAGTTACTACTCTTGGTGAGCTTTGTAAGATTCCTGAGCAGGGTGTTCGAGTGGAAAAATCAGAGGAGACGGTTGTCCAAATAGAACCTAAAAAAAGGCGCGCGGCCGCTGCAAAGAAAAAGGTCGTTTCGTAA
- Protein Sequence
- MTSIKILDTRYNVGIQNISGKKTENPIYLSIKPARLIGEIKRRDIRAILRVALGAVPAVGLSTSCCNRVPGGYGETTKTFKGLDAQHEDSSVYSIIKRNASIIIDNSTITPFKCHKNKFFCFYCGEKYADPRRIREHTIEQHEEAKTLTLIEKYGKYNLVNVDVAEMSCKRCDESFTSLTDLKNHLINSHGEQINANCDDGVVPFDFGMEDFCCYICRKRHDTFLKLNNHMRTHSLRYVCETCRKGFVSFRRLRQHFGTHATVEFNRIGETTETVEGMKVERDGPSFNSSIIKKNACTIIENSNVTPFRWHKSGFRCFYCDAKFADPGLIRKHTMEHHKRAKALPLIKNLGKYDLVKIDVADMSCKLCQENFTSLTDLKNHVTDVHRQTINKEFSDGVIPFHFDTEVFNCYICKKDFDAFFSLNVHMNVHFHNFVCDTCGKGFISPKRLKQHFGAHMKNKLHCTGTMTKMFKAINVQDEDPFVNMSAIKRNSCIIIENSTVRPFKCFKNVFFCFYCDEKFANPKHVKEHTSVHHEEAEVMTRVEKSGKYNFINIDVGGMSCKICREDFTSLTDLKIHLMNVHEQKINLGCSDGLIPFNFDTENFTCHLCEEQFHVYPLLNHHMNTHFQNYICDTCGKGFVSPNRLKGHLASHATGEFPCSICNMVFTKSLTRSAHLNACHNASKGFKCAYCPEVFNTSSKRNLHQRDLHNKILLKPKCPVCAKTFNTPAMKNIHVKGVHLRKAVYSCDVCGDKFIARRNLSVHKRVVHKEQRIQCDISKSEPKSVSEPKHEDRFVRDHALRRMGRQADANKPRPILVKFLDVEVRDKIWFAKTKFGGTGITVSEFLTKSRHELFLAARERFGVTKCWTKHGHIFILGPDDTRHRVTTLGELCKIPEQGVRVEKSEETVVQIEPKKRRAAAAKKKVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -