Lfer018126.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- znf711
- Assembly
- GCA_949709985.1
- Location
- OX453256.1:12708326-12722417[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00015 0.013 16.7 0.6 1 21 29 49 29 50 0.94 2 13 0.00017 0.015 16.5 1.8 1 23 86 109 86 109 0.93 3 13 0.016 1.4 10.4 1.0 2 23 117 139 116 139 0.96 4 13 7.4e-07 6.4e-05 24.0 1.8 1 20 144 163 144 165 0.95 5 13 1.5e-05 0.0013 19.8 5.5 1 23 179 201 179 201 0.98 6 13 0.19 17 6.9 1.7 1 23 207 230 207 230 0.95 7 13 0.00022 0.019 16.2 1.1 1 23 235 257 235 257 0.98 8 13 0.53 46 5.6 1.2 1 23 262 284 262 284 0.96 9 13 1.4e-05 0.0012 20.0 1.9 1 23 290 312 290 312 0.96 10 13 4.7e-06 0.00041 21.5 0.6 2 23 316 337 316 337 0.98 11 13 1.7 1.5e+02 4.0 0.1 8 23 355 370 343 370 0.77 12 13 0.0004 0.035 15.4 2.5 1 23 376 398 376 398 0.98 13 13 9.5 8.3e+02 1.6 0.2 3 23 406 429 405 429 0.79
Sequence Information
- Coding Sequence
- atgcCTCCGAAACGTAAAGTGGGCCGGCCGCCCCGCAAGAACCATGAGAAAATGGCTGATAGTGGAATTAAAAACAAGTCTCAATATAATTGTGAAAAATGTACTAAATCTTTTGAGACTTCTATAGGGTTAAGACGACATAAAAAGGCTTGTGAACCGAAAACAGAGTGTGTTAAACAAGAGAAAAGTTCCATAGAACTAGATTATGAACTAGAAAGTGaatacaagaaaattattactGGCCAAAAActtGCATATGTTTGCAAAAAATGCAACAAGAAGTTCAAATTTGAGGAATCATATCAGAAACATGTTgctctagaacattctgaactACCAAACAGTCTGAAGTGTAATAAGTGCATCGCTCGATGCCCTACTTCAGAGGATTTAAAAGAACACATTCGGAAAGCACATAAGAAAGAAGTCTATAGATGTCCACATTGTGATAAGACATTCACGAGGAATTATCATGTCATAAGACATATTGAACAGATGGGTTGTAATGCATGTGCTGAACAAACTGATAAAATGTTTGTCTGTGAAATTTGCAACTGTACTTTCACAAGGAAAGACAATCTAATGTATCATTTAAGACACCATCTGAGGGACAAACCATACAAATGCAAAATATGTCAATTTGAAGCCATTACACATAAGAAACTATTAATACatgcccgggacaaacatttagGAAAGAAGTTCCAGTGTGACCATTGcggaaaaattacaaaatcccGAATGGCTATCGCTAAGCACTTGAAAATACATGGACACAAAGAATTTGCTTGTAATATGTGTAACTACATGACCCACACCATTGAAGTGATGCAACGTCACGTGTTACGCCACACAAGCGACAAGCCTTTCAAATGCCCCCAATGCCCGCGCTCGTTCATACAACAATGCCAGTTACGGCAACACGTCGTTTCGCACGAAGGCAACACTTGCACTCAATGCGACCAGACATTCCCAACGAAGGCCAGTTTGATTTTACACTTGAGAACACACGAAGGCTTAGAGCaactgtactgtacatatgCAGATTGTAAATATTCCAAAGTGCCTTTTGCATATGAAGAATCATTAAAGAAGCATCTCGATTCACATGTCGGAAACAAATCGTATTCGTGCCAACTGTGCTCCAAAAAGTTTCATGTCGAAATCAATCTTAAACGTCATTTGAACATTCACACGTTGGATCGCCCAAGGCGCTGCATGTATTGCGCCACTGCGCGCGCCTACATCCGTGGAGATATGTTGGTGCGCCATGTCAGAAATCGTCACCCAGATATCTTCAAGGAACACCTGACTAGCGTCCGACAAGTGCTGggTTTCGATGACTCGGAATCGAGAGTTAGGAGAAATGAAATTGAATCCATCATACTTAGATTAGATGCATTGGAAGAACAAGTGTTCCAGAAAGGCAACCTCGGCAAGGATTTGTATGGCGGCATGACAGAAATTATTTTCACACCAAAAGATAAAGAGCCTGAGGACAGTCCACTTATGTCAGAGGAAGAATTAACTGAGAATTTGGGAAAACTTTTATCACAGCTAATTGATGAGCAAACACTACAATACTTAGGCTGGCCTGAAAACAGTGTTGATGAGGTGTTGGAGAAAGTAATCGAACAGTGCGGGCAGCGAGCAGCCGACCGCGAACGTTGGTCCCGCGTTCAATGCTTACGCGAGAACGCGAAACACTTGTTCTTGCATGTCATTGACGATAAGACGATCGCGCGAATGCTCAGTACGCACACCATCGACCAAGTTGTTCGGCACATACTTAATGTTAGCCAATAG
- Protein Sequence
- MPPKRKVGRPPRKNHEKMADSGIKNKSQYNCEKCTKSFETSIGLRRHKKACEPKTECVKQEKSSIELDYELESEYKKIITGQKLAYVCKKCNKKFKFEESYQKHVALEHSELPNSLKCNKCIARCPTSEDLKEHIRKAHKKEVYRCPHCDKTFTRNYHVIRHIEQMGCNACAEQTDKMFVCEICNCTFTRKDNLMYHLRHHLRDKPYKCKICQFEAITHKKLLIHARDKHLGKKFQCDHCGKITKSRMAIAKHLKIHGHKEFACNMCNYMTHTIEVMQRHVLRHTSDKPFKCPQCPRSFIQQCQLRQHVVSHEGNTCTQCDQTFPTKASLILHLRTHEGLEQLYCTYADCKYSKVPFAYEESLKKHLDSHVGNKSYSCQLCSKKFHVEINLKRHLNIHTLDRPRRCMYCATARAYIRGDMLVRHVRNRHPDIFKEHLTSVRQVLGFDDSESRVRRNEIESIILRLDALEEQVFQKGNLGKDLYGGMTEIIFTPKDKEPEDSPLMSEEELTENLGKLLSQLIDEQTLQYLGWPENSVDEVLEKVIEQCGQRAADRERWSRVQCLRENAKHLFLHVIDDKTIARMLSTHTIDQVVRHILNVSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -