Lfer026005.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453265.1:5090291-5093063[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0015 0.13 13.6 2.7 1 23 50 73 50 73 0.97 2 18 1.4 1.2e+02 4.3 0.0 2 23 100 122 99 122 0.94 3 18 0.31 27 6.3 0.7 2 23 145 167 144 167 0.92 4 18 5.9e-05 0.0051 18.0 0.2 1 23 172 195 172 195 0.95 5 18 0.65 57 5.3 4.0 1 20 200 219 200 223 0.73 6 18 0.00065 0.057 14.7 2.5 1 19 258 276 258 281 0.90 7 18 0.0024 0.21 13.0 2.3 1 23 287 309 287 309 0.97 8 18 1.5e-06 0.00013 23.1 0.8 1 23 315 337 315 337 0.99 9 18 9 7.8e+02 1.7 4.3 1 23 387 410 387 410 0.91 10 18 5.2 4.5e+02 2.5 0.1 2 23 436 458 435 458 0.88 11 18 0.032 2.8 9.4 0.6 2 23 481 503 480 503 0.93 12 18 0.00016 0.014 16.6 0.5 1 23 509 532 509 532 0.96 13 18 0.045 3.9 8.9 3.1 3 23 539 560 537 560 0.95 14 18 0.062 5.4 8.5 0.1 2 23 566 588 565 588 0.94 15 18 0.001 0.091 14.1 1.1 3 23 597 618 595 618 0.97 16 18 8.5e-05 0.0074 17.5 0.4 2 23 625 646 624 646 0.95 17 18 0.0025 0.22 12.9 2.9 1 23 652 674 652 674 0.98 18 18 8.1e-07 7.1e-05 23.9 1.0 1 23 680 702 680 703 0.96
Sequence Information
- Coding Sequence
- ATGCAAGATCGATTGAAGAATAAGTGCAAGAGAGAACGCTTAACGGAGAGTTCGCCTAGTGAAAGCGAGAAAGCATTATTGAGACAAATATTATTGAACGTACTTCAGTGTTCCACAGCGATGCCTTTCAGGCGATACGGCAACAAATATAGATGTTTTTACTGTAACAATAGTTTTTACTATGCTAACGAATTGCGCGAACACACGAAATCTAGTCACAAAACTCCTAATATAGTGCGAACACTTACTAAGAATGTTACGGAGATGAGCACCATTAAAATAGACACAGTCGATCTATCTTGTAAACTCTGCTCCCTAATCATAGACAATATAGAGGATTTGATAGATCATTTGAACAAAGACCATGGAAAGAAGTGCGATAAAAACGTAATATCTTTTCTTTTACCGTTTAAACTTGCAGACGATAAGTTATCGTGTTTGGTTTGCGGTCAAGAGTTCACGTTTTTCGGACCTCTCCTTCTTCACACGCATAGGATGCACAAAACCAGACAGTTTATGTGCGAGATTTGCGGACAGAGTTTCTCTTCTAATGGCAGCGTGTCAAGACATTCGCAGAGCGTCCACGCGACGGACGTTTTCCAGTGCAGGCACTGCGATAAAAAGTTCTATGCGGCACATCGCAGGGACAACCACGAGAAGAGAATTCACGACATTAGTAAACTGAAGTGTCGCGTTTGTTCTGAAATCCTTGGCAGCGAGTACAAAAGGGACACGCACATGGCCACGGTACATAACATATGGACTGCAGAGTTCAAATGTACGAAATGCGAGAAAGTGTTCAGGTTCAAGAACCAGCTGGTGAACCACGACAAAAGGGTACATTTGAAAGAGAAGAATTTCACTTGCGAAATGTGCGGTGATAAGTTTTTCGATAGGCATTTACTCAAACTGCACATGGTGAGACACAGTGACGAGAAGCCGTTTCAATGCGATCTGTGCAAAAAAAGTTTTCCGCGAAAGAGGGCGCTGGAGATACACACGAGGATACACACGAACGACAGAAGGTGCATTTACTATGGAGAAGCGGCCAAAATAGACAAACTGTCAGACAAATGGCGCAAATCCGAGATCGTAAAACTGTTATCGCGCCTACTAGAATTGACTACAGTGATACCGTTCCGATGGTCGTCGAacaaatatctatgtttttacTGTTGTTCCAATTTCACTAGCTCGCAAAAACTCAAAGAGCACACGAAGGAAGAACACGAAAACGCGAAATTAAAGAACGTCCTCAAAAACATATCCGGTAGAAGCAGCGTGAAAATAGATGTCTCTGAAATAACCTGTAAACTGTGCAAAGTAGAAATTGAGAGTTTAGACAAACTTATGGACCATCTCGTGGAAAAACACGACACGGAGTACGAAAGGGGTGTTAAGCATTATCTGGTACCGTTCAAACTGTCCGACGATGAGATGTACTGCCTGGAATGTGAGAAAACGTTCCGTTTCTACGGCACTATGTTGGCGCACGTTTACAAAACCCACATCCGCGCCAAAAGTTTCATATGCGAAATCTGCGGCCAGAGTTTCAGTTTCAAGCTCAACATGGACAGCCACATGAAGTGGACGCATTTGAACGGCGAATGGGCTTGCGAAGTATGTCACAAGCAGTTCCCGTCGTACTACACGAAGAGGAACCATTATCACACGGTCCACAGGACCGAGAAGCTTCAGTGCCCCAAATGTCCGGAGATTTTGAGGAGCGCGTATCTGAAGAAACAGCATCTGGCGATAGTTCACGACATGAAGAGCGTCCAGTTCGGTTGCGACGTCTGTCAAAAAGTGTTCACGTTGAAAAACAAACTGCTTTCGCACAAACGTCGCGTCCACTTAAATGAGAAATCGGTGACTTGCGATATATGCGGCTTCAGGGTCTTCAACAACGAAAATCTTAAAAGGCACATGGTGAAGCACGATAACGCCAGGCCGTATGAGTGTGAATTCTGCAAGAAGGCGTTCCAGAGGAAAAAGACTCTGGAGTTCCATAGAAGGATACACACGAACGACAGGCGATACGTGTGTAAGGAATGCGGCAGGGCGTTCGTTCAGACCACCAGTTTGAAGTTGCATATCAGAGTCCATCATTCGAAAGGGCACGATAAGTGA
- Protein Sequence
- MQDRLKNKCKRERLTESSPSESEKALLRQILLNVLQCSTAMPFRRYGNKYRCFYCNNSFYYANELREHTKSSHKTPNIVRTLTKNVTEMSTIKIDTVDLSCKLCSLIIDNIEDLIDHLNKDHGKKCDKNVISFLLPFKLADDKLSCLVCGQEFTFFGPLLLHTHRMHKTRQFMCEICGQSFSSNGSVSRHSQSVHATDVFQCRHCDKKFYAAHRRDNHEKRIHDISKLKCRVCSEILGSEYKRDTHMATVHNIWTAEFKCTKCEKVFRFKNQLVNHDKRVHLKEKNFTCEMCGDKFFDRHLLKLHMVRHSDEKPFQCDLCKKSFPRKRALEIHTRIHTNDRRCIYYGEAAKIDKLSDKWRKSEIVKLLSRLLELTTVIPFRWSSNKYLCFYCCSNFTSSQKLKEHTKEEHENAKLKNVLKNISGRSSVKIDVSEITCKLCKVEIESLDKLMDHLVEKHDTEYERGVKHYLVPFKLSDDEMYCLECEKTFRFYGTMLAHVYKTHIRAKSFICEICGQSFSFKLNMDSHMKWTHLNGEWACEVCHKQFPSYYTKRNHYHTVHRTEKLQCPKCPEILRSAYLKKQHLAIVHDMKSVQFGCDVCQKVFTLKNKLLSHKRRVHLNEKSVTCDICGFRVFNNENLKRHMVKHDNARPYECEFCKKAFQRKKTLEFHRRIHTNDRRYVCKECGRAFVQTTSLKLHIRVHHSKGHDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -