Lfer027576.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453267.1:2424376-2428690[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00028 0.024 15.9 1.1 1 23 147 170 147 170 0.96 2 18 9.4e-05 0.0082 17.4 1.2 1 23 179 202 179 202 0.97 3 18 0.019 1.6 10.1 0.4 2 23 215 237 215 237 0.96 4 18 0.00012 0.011 17.0 2.0 1 23 246 269 246 269 0.97 5 18 0.002 0.17 13.2 1.5 1 23 281 304 281 304 0.97 6 18 0.009 0.78 11.1 0.2 3 23 336 357 334 357 0.96 7 18 5e-05 0.0044 18.2 1.6 1 23 366 389 366 389 0.98 8 18 0.064 5.5 8.5 0.3 2 19 394 411 394 411 0.94 9 18 0.018 1.6 10.2 4.6 2 21 419 438 418 441 0.94 10 18 0.1 8.9 7.8 1.8 1 23 450 473 450 473 0.94 11 18 0.00065 0.057 14.7 3.6 1 23 478 501 478 501 0.97 12 18 0.00044 0.038 15.2 1.4 1 23 510 533 510 533 0.95 13 18 6.5e-06 0.00057 21.0 1.0 1 23 560 583 560 583 0.93 14 18 8.5e-06 0.00074 20.7 2.2 2 23 620 641 619 641 0.97 15 18 0.058 5 8.6 1.1 2 23 648 671 647 671 0.93 16 18 3 2.6e+02 3.2 1.4 2 23 681 702 680 702 0.93 17 18 0.025 2.1 9.8 0.8 1 23 709 731 709 731 0.96 18 18 0.00087 0.076 14.3 1.2 1 23 737 760 737 760 0.98
Sequence Information
- Coding Sequence
- ATGTCAGTTGATGTCGAAAGTAGTCATAATGTAGAACGCTTAGacgtaatttttgaaaataaagacaCTAAAAAAGTACGTCAAGATCCGACAACATTCTTGCCAGAGGAACCCATGGTGTATGAGttcaaaaagaagaaaaagaaaaagaagcgCAAAGAAATAGAAGATCCATTAAAAGATTTGGAAAAAGCTGAATCCAATGTATTAGTCAAGATTGAACCAGATGTAACTATCAAAGTAGAAAATATTGAAGTTGAAGTTGATTTCCATCAgTTTACAAACAGCAACGGACTGATGTTGCAAGATGGGTCACATGAGAATATTAAAAACGAACAGGACGAAGGTTTGCTTTGTTTATCGTTTGAAGATGCTAATGACAAGTCTATATTTGGCTATGGCCCTATTGGATACAGGGACATAGACACCGCTCCAACGTTCATATGTGACATATGCAATAATGTTTTCAACACCGCGAAAACATTGAGAATccacaaaaaaagaaaacataattcATTCCCTAAAGCGTTTAAGTTCATTTGTCACGATTGTGGCATGTCATATGAAATGAAGAATAGTTTGCTAGCACATATCAAGAGGAAACACAGTCCAGATTCTGTCCCAGAAGACAAAGAAGAAAGAGTTTGCGAAATATGCTCATTAATGTTTGTCGGCATGGATCGTCTTAGGATGCATATGAAAAGAAAGCACGATtcgtttttcgaaaactttaaaCACACATGCCCTGTATGCAACCTCAGTTATGATAAAAGCAGAAGTTTAACTGTTCATATGCAAAGGAAACATAACAAACCGAAGAAACAATCTCGTCGTTCTCTATACAACTGCCCGTTTTGTCCACGATTATTTACAGTTAGAGATACGTATATGAAACACGTGAAGAGGAAGCACGAGATGCCCGAAGAGTTTAATCAACTGAACCTATGTCCTGAAAAATTCCTTCAGACGTATGCACTCAACGCCGACGGTACGGGAGAACTGGCTTGTGCTCAATGTAGTCTGGTTTTCGCGGATGTTAACAGGCTTAAAATACACATGAGGCGCAAACATGACGCTTACCAGGAATTCTTTAGTTACAAATGCACTGTCTGTAATTTATCTTACGACAAAATGGCCAGTCTCAAGAGACATATCAGAAGAAAACACGACAAAGGCGCCTATTGCGAGATATGCCAGAAACAGTTTGATACGCGAGAGTTATACCTAAATCATGATCATGAAGAAAAAGTACTAGAATGTAGCCTGTGTGATATGATATTTTCACACAGAAGAACTTACTCTAAACACATGAGATGCACGCATCAAATTGAAGATGGAGAAAAATCATTCTTCTGCAATCTATGCAATGACGGTTTTCGAGAAAAGCGGCAACTCAGGTTGCATTTATCGCAGAAACATTTTAAAGTGTGCTACACATGTGGCCattgtagtaaaatttttaaagcaaaAGAAAGTTTTAGACGACACGTTTTAAGGAAACATCCTGTTGATCAATTGAAGATTGAACATACGTGTCGTCATTGTAAGGAAGTTTTTCCTAATGAACAAGAACTTTCTAAGCATATAGATGTCGCTCATAGCAAGTCAAGTAATCCAGTCTCGATGAGCGATCTTCCCATAGATTTAACTTTACCTGATCTGTCTTTGGGAAAAGGTTACCAATGTCCGAAATGCCCTGAAACCTTCACCGAGTGgtcggatttaaaaaatcacaatcAGCACATCCACTGTCCCCCGGATATCAAATTAGAATGTCAGTGTCAGCTGTGTGGCTTAGTGTTGCCAGAAATCGATTTACCGAAGCATATGAAAAAGGCTCACACCGAGGTTGACCTTAAATGTCCGCACTGCGATTATGAAACAACTCGTAAAGCTAATTTAACCAAACATCTATTGAGACATACAAACATGTCTCCGTTGAAATGTCCAATGGATggatgtaaatttaaaactttttataattcGGCGTTGcaaaatcataaaatgaaaCATCTGTCTGGGAAGGATCGAATAAGGCTACAGTGCAGTAAATGTCCATTTCAATCaatgaataaatatacaatgaagTACCACGAAGAACAACATCTCACCGGCAAAAAGAAGTATTGCTGTGACCAGTGCGATTACGCTACTATACTGCCAGCTaatttaattcaacataaaTATAAGCACTCGCCCGATAAAAACTTCAAATGCGAAGTATGCCCTTTTGCGACTAAATATAACGCCTCGCTTCGTTATCACATTAAAAAGAAACATTGTGACCTCCCCGTAGTCAATGTGAGTGAAAATgtcatagaataa
- Protein Sequence
- MSVDVESSHNVERLDVIFENKDTKKVRQDPTTFLPEEPMVYEFKKKKKKKKRKEIEDPLKDLEKAESNVLVKIEPDVTIKVENIEVEVDFHQFTNSNGLMLQDGSHENIKNEQDEGLLCLSFEDANDKSIFGYGPIGYRDIDTAPTFICDICNNVFNTAKTLRIHKKRKHNSFPKAFKFICHDCGMSYEMKNSLLAHIKRKHSPDSVPEDKEERVCEICSLMFVGMDRLRMHMKRKHDSFFENFKHTCPVCNLSYDKSRSLTVHMQRKHNKPKKQSRRSLYNCPFCPRLFTVRDTYMKHVKRKHEMPEEFNQLNLCPEKFLQTYALNADGTGELACAQCSLVFADVNRLKIHMRRKHDAYQEFFSYKCTVCNLSYDKMASLKRHIRRKHDKGAYCEICQKQFDTRELYLNHDHEEKVLECSLCDMIFSHRRTYSKHMRCTHQIEDGEKSFFCNLCNDGFREKRQLRLHLSQKHFKVCYTCGHCSKIFKAKESFRRHVLRKHPVDQLKIEHTCRHCKEVFPNEQELSKHIDVAHSKSSNPVSMSDLPIDLTLPDLSLGKGYQCPKCPETFTEWSDLKNHNQHIHCPPDIKLECQCQLCGLVLPEIDLPKHMKKAHTEVDLKCPHCDYETTRKANLTKHLLRHTNMSPLKCPMDGCKFKTFYNSALQNHKMKHLSGKDRIRLQCSKCPFQSMNKYTMKYHEEQHLTGKKKYCCDQCDYATILPANLIQHKYKHSPDKNFKCEVCPFATKYNASLRYHIKKKHCDLPVVNVSENVIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -