Lfer002998.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453242.1:3354198-3374733[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 2e-06 0.00017 22.6 2.8 1 23 200 222 200 222 0.98 2 30 0.0001 0.0087 17.3 0.5 2 21 258 277 257 278 0.93 3 30 5.1e-05 0.0045 18.2 0.1 2 23 301 323 300 323 0.96 4 30 0.51 44 5.6 2.3 1 23 376 399 376 399 0.95 5 30 0.011 0.98 10.8 0.2 1 23 422 444 422 444 0.96 6 30 5.2e-06 0.00045 21.3 1.7 2 23 486 508 485 508 0.96 7 30 0.00059 0.051 14.9 3.3 2 23 545 567 545 567 0.97 8 30 0.011 0.95 10.9 3.1 1 23 617 640 617 640 0.97 9 30 0.055 4.8 8.7 0.3 1 23 698 720 698 720 0.96 10 30 0.041 3.6 9.1 7.3 1 23 731 753 731 753 0.98 11 30 0.16 14 7.2 2.6 2 23 765 786 764 786 0.96 12 30 0.0032 0.27 12.6 1.1 1 23 796 818 796 818 0.98 13 30 0.018 1.5 10.2 6.2 1 23 843 865 843 865 0.95 14 30 0.0022 0.19 13.0 2.5 1 23 876 898 876 898 0.99 15 30 5.9e-05 0.0051 18.0 2.4 1 23 906 928 906 928 0.97 16 30 0.053 4.6 8.7 0.1 2 23 948 970 947 970 0.97 17 30 0.012 1 10.7 1.3 1 23 988 1010 988 1010 0.98 18 30 3.1 2.7e+02 3.1 1.8 3 23 1019 1039 1017 1039 0.92 19 30 0.0044 0.38 12.1 3.4 2 23 1050 1072 1049 1072 0.95 20 30 0.0056 0.49 11.8 0.1 2 23 1095 1116 1094 1116 0.95 21 30 0.3 26 6.3 0.3 2 20 1120 1138 1119 1139 0.92 22 30 3.8 3.3e+02 2.9 5.6 2 23 1159 1181 1158 1181 0.95 23 30 0.0014 0.12 13.7 0.3 2 23 1197 1218 1196 1218 0.95 24 30 4.1 3.6e+02 2.8 3.7 5 23 1228 1246 1225 1246 0.94 25 30 0.014 1.2 10.5 0.8 2 23 1257 1279 1256 1279 0.95 26 30 0.19 17 6.9 6.3 2 23 1296 1314 1296 1314 0.96 27 30 0.095 8.3 7.9 1.1 2 21 1318 1337 1318 1338 0.93 28 30 4.4 3.9e+02 2.7 0.3 2 23 1386 1407 1385 1407 0.93 29 30 0.0037 0.32 12.3 1.5 2 23 1418 1440 1417 1440 0.95 30 30 0.16 14 7.2 2.8 1 19 1477 1495 1477 1495 0.96
Sequence Information
- Coding Sequence
- ATGGCTCTCAAACTTGGAAAATGTAGATTGTGTCTCAAACTTGGCGATTTTTACTCAATATTCACCATGGACAACTCTATTCAACTGGCCGAAATGGCCATGGATTGTGCTAAAATAAAGATATATGAAGGAGATGGGCTGCCAGATAAAGTATGTAGCGAATGTATCGCAAAACTAAGTAGTGCTTACATATTTAAACAACAATGTGAACGAGCTGATCATGAACTTCGTAGGAATTATGTACCACCTCCAGGATTTAATATTCCATCACCAAATAATAGACAAAGCAGTGACTCAGGATTTTCAAATAGAACGGATTTATCTAACCAGCCTAAACCTTCATCATCTAATGAAGAAAAATTTGTACCAGCTATAAGAAAAAGAAGCAGGGGAAGTGACGACAGCAATTCTGTAAGTAGTAGATTTCAGGACACAcccaaattaaaagaaaatttaaagtcACGTGTCAATGAATTAAGAAGTATAGAGAAACGGCGAAGAATAGAATCGGATAATACTTCAACGAAAGAATCAGATTATGAAGACAACAGCATATCTCAGTATTCAGCAGATACTGATTCTGATGAACCTTTGTTGCATAAATGTGACATTTGTGGCAAACAGTTTGAAACAAAGAGCAGTCTAAGTCAACACAGACGTGTGCATTCCCGCacaaagaaaaatgaagaagcTAGTAACAGTCTTGGTCAAAATGCAGTTGTTGCCATTCCTACCAATAGTCATGgcgaagaaaaagaagaagaaaaactcTCTTGCGATAAATGTGGGAAatctttcaaattaaaaatcatgCTAAAGAGGCATCAACAAGTTTGTGCGGTTCCACCACAAAAGGAACTGAAAGTCacattagaaaatataaacgcagagaaaaaaattgaatgcaAATACTGTGGTGGTGTATATAAAACGATCgagaatttagaaaaacatatgaaaattGTGCATGCTGCTGTATTAAATGAAGCTGATAAGCAAGCACTGATTGGCAAAGAACAGACAAAAGTTTCTATACCTTGTATATTTTGTCATAAACCGTTTGAAGACTACTATGTTCATGCTGTCCATTTCAACTCATGCACAAATAGGTCAAATATTACTACTTTTACATGTTTAGTGTGCGCCAGTCGCTACAGctcaaaaaaatcttattttaaacaCTTAAATGATTATCATTTTTGTGTGCAAAATGTTccaaaaaaagaagaaacatCCAAGGTGAATGAAGTAGAACAAGAATTGTTCCAGTGTAGGTTGTGTAACACTAAGTTGGCATCGCAAGAGCAACTGATAACACATTTAGCAGCGCATATGTCCAATATTGATGATGGTGCTGCTGCTTCAACTGCAGAAGAAGAATCCAGGGGCAGTACGCAAGAGGATACCGTTTCGATGTATTCAGAAAAGAGTGCCAATACAAGTGGTATTCAATCAAAGTGTCAATATTGTGATAAAGTGTTTACCTATAAAAAGAGTTTAACCAATCACATTATCATGAAACATTCAATGGGAGAAGACTTGAAAAATGTACCTCCTGATATATCTGCGACAGAAGATAAAGAGTGTGAGGAACCAGTGTCGGAGGAATCTGATGAAGATGACGGAGACAATACATGTGACATATGCGAAAAGGATTTTTCATATAAACGCCTTTTAATCCATCACAAAAGGACTAAACATAACATGAGCTCCGGTACGAAAAGAGCAAAGTTTACTCTAAATGACTGCTCTGTCAAATGTGAAATTTGTGATATTACAATGAAAGTTAGTGAGATAAATGCGCACAACAAGCAACATTTATCTAACAACATAAAACCCAGAAATATTTATTCTTGCTTTGAATGCGAGGACACCTTTAAGAGTTGTCAAAGTTTGAGGACCCATATAAAAATGGTTCATCGGCTTAAACGCCACGTGACAAGAAAGTATCAAGTGGCCGATCTGGCGGATTTTTGTGAAGTCGTTGTGACAAAGACGGAACCCCTGGATATAGTCCAGAGTCACAACGACTTTGGGGAGGTTCCAGGCGAAACGATTGACGGTGTGAAACCAGTGGTGGACCTTAGTGGTTTCACTTGTCCCATATGCAGTAAGAAAATGGGTACACTCTTATCATTGAAAAGGCATGTCAGTTGGCATACAAATGTCGGCAACAATATTCAAAAGACTTATGAGTGTTTCATTTGCAAAGTGACCTTCAGATTCAACTGTCACTATAAGTTGCACATGAAGGAGCACTATCACGACACCAATCTAGACCCTAAGTATCTGACGTGCAGCATCTGTAATCGCAAAAGTAAGCATCTACGAGCTGCACAGATGCACATGAAGTATCACAATCAGACGAGATTCAACACCAAAGACTATCAGTGCTCTATCtgtaaaaaagtatttcaattCCGTAAGGTATATCTTTCACATATGGCAATACATTATAAGAAAGGCGACTCAGTTCTGAACACCGTTATCGGTGAATCCGTGAATCCGATTCTCAATGGCGAGGCTCACCAATGTCCACATTGTGGTAAAGTCTGTGACTCAGAATCTTCACTCAAGTGTCATATCTCATGGCACAAGTCAAAGTCTTCATTATATGGCTCTAGATATCAGTGCAGCTTTTGTGGTCTTcaattcacaaataaaaaacgCCAAGAGCTCCATCTGCGAACGCACTATGAAGACGAAAATGGTCCTTTTAAATGTCACATTTGTGGAAAGGGTTACACCGATGAGAACTATTACCGACGACACGTTAAGGGTCACAACTTTGATCACCAGTCGCACAAGACACGGATAGCAAAACTACGCGCTAATAAAGTAAAATGTCCTATCTGCATTCGCTTTTACCCAGACGTGGTCAAACTTATTCGCCACTTGCGCAGAACGCACCCAGAAAGTAAGATGATTAAGACAGACCCTGATGCGCCCCCGCAGCAGGTATACCCTTGTAAGCTATGCGCTAAAGTATTCATGACTGAAAAACGATTGCTACATCATCAAGCCTCGCATCTCCGTAAGCATAACTGGATTATATGCAAATTTTGCGGGAAAAAGacgatttcgatgaaatctcATAGGATCCACATAAAAGGTCATTTAACCGAGAAACACGTCGACAACCCTCTGAAATGTCCTCACTGTAACGAGACCTTCATAAAGGGATACGCGTTGCATCACCACTTGCGTGATGTCCATGAAATCGACGAAACTTGGATCGCGGAGATTGGCGATCAACCTTTCAACGGTCCACTCAAAGATTTACAGTGTTCGGTTTGTCTCAAGGTCCTTGCGTCCAAAGGAAATTACGAGAGGCACATCGATTATCACAACTCATTGAGGtgcaattattgttttgaatatttcaGCACGTTAAAATTCCTTGAAGGACATCTTGCATTCGGTTgtgaaaaaagaaacttaattggTGAAACCGAAGTTTACCCCAAGAAGGTTAAATGTCATATATGTTACAAAGCTTTTCATGTACAAGTGAAGCTAGACTGCCACCTGAGAACGCAGCATAATATTAAAGTGAACAGAGAATCAAAGCagggaaataaaaatattgtttgtgaCTATTGCTTTAGGGTCTTCGAAAATGAGGACAGTCTGACTACCCACAAGATATACCATCGGACTGTGGGATATTACGGATGTATTTACTGTAATAGAAAATTTAACACACTCACTGTGTACcgaaaacacaaaaatcatcattTCTCACAACTGAACGAAGACAATCCTACAAAGTGCGAACACTGCGACGAAACCTTTGTCGCGTTTAGAGACATGATCTATCATATGCGTGACGTACACGGAGACAAAAAGGAATGGATAATAATGCCCAAAGAGACAATCGAAGAGGAATGCAATATCTGTCACAAAAGATTCTACAATTTACATAGGCATATTAGGTACCATGAAGAGAACAGATGTAAAAAGTGTGGCGAATATTTCTACTCCAGAGGCGACTATGACAATCATCTATGTGCCATAGACAGCGATGAGGATCCTGAATCCAACGAAAAAGATTTGCGGCCCAAATACGATGAGTGTACTTTCTGTTTTAAGCCCATAACTAAAACTAGTTCTAAATTGAAGCACGACCTCATTCATAAGAGTTCAGGTTCCATATCGTGTCGTTTCTGCGCGTTAAAGTTCAACACCATAGATGCGTTTAACATTCACGCTTTTTCGCACCGTAGCAGAAAGTACACAAAAAGTCCTCTGAAATGTAGCCACTGCAGTGAGAAATTCATCCGTTATGGACCATTCATTAAGCATATGAAGGAAGTacataaaagcaaaataaagatGCACTACCGGGCCACCATCCTTCCGGAACGTTGTATCGTATGTGGCGACAGTTTCCCTAATTTGCACAATCATTATCGCGCCCATTTGCAACATCAGTGCCAAAATTGTAGTAAATATTTCACGTCCAACAAACTATTTTTGGCTCATGACTGCAGTAAACCTGATGCTGACCCATCAAAAGTTTTCACCTGCGATGAGAATCTTCTTATACATATAAACTCCTATATGCCGaaagatttaaataaagaaCTAAAGTATTATGGACAAGTAGAAGACGAAGAGACAAATGGCGAACCAGAAACTAATGATGATGAAAGCCAAAATTCCACTGACAACAGAATGCCTCTATCAATCCAATCGCCAATTATTTCCGAAATCCTATCactttataaagaaaaaaaagtaaatgttgAAAGCAAAACCGTGAAGgagcaaattattaaaaaagaaaatgaaattgaagATGACGATATTGTAGAAATAGTAGAAAATGGTCCAACAGAAAAACAGTTTTTGACGATTACCATAGACGATTAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTMDNSIQLAEMAMDCAKIKIYEGDGLPDKVCSECIAKLSSAYIFKQQCERADHELRRNYVPPPGFNIPSPNNRQSSDSGFSNRTDLSNQPKPSSSNEEKFVPAIRKRSRGSDDSNSVSSRFQDTPKLKENLKSRVNELRSIEKRRRIESDNTSTKESDYEDNSISQYSADTDSDEPLLHKCDICGKQFETKSSLSQHRRVHSRTKKNEEASNSLGQNAVVAIPTNSHGEEKEEEKLSCDKCGKSFKLKIMLKRHQQVCAVPPQKELKVTLENINAEKKIECKYCGGVYKTIENLEKHMKIVHAAVLNEADKQALIGKEQTKVSIPCIFCHKPFEDYYVHAVHFNSCTNRSNITTFTCLVCASRYSSKKSYFKHLNDYHFCVQNVPKKEETSKVNEVEQELFQCRLCNTKLASQEQLITHLAAHMSNIDDGAAASTAEEESRGSTQEDTVSMYSEKSANTSGIQSKCQYCDKVFTYKKSLTNHIIMKHSMGEDLKNVPPDISATEDKECEEPVSEESDEDDGDNTCDICEKDFSYKRLLIHHKRTKHNMSSGTKRAKFTLNDCSVKCEICDITMKVSEINAHNKQHLSNNIKPRNIYSCFECEDTFKSCQSLRTHIKMVHRLKRHVTRKYQVADLADFCEVVVTKTEPLDIVQSHNDFGEVPGETIDGVKPVVDLSGFTCPICSKKMGTLLSLKRHVSWHTNVGNNIQKTYECFICKVTFRFNCHYKLHMKEHYHDTNLDPKYLTCSICNRKSKHLRAAQMHMKYHNQTRFNTKDYQCSICKKVFQFRKVYLSHMAIHYKKGDSVLNTVIGESVNPILNGEAHQCPHCGKVCDSESSLKCHISWHKSKSSLYGSRYQCSFCGLQFTNKKRQELHLRTHYEDENGPFKCHICGKGYTDENYYRRHVKGHNFDHQSHKTRIAKLRANKVKCPICIRFYPDVVKLIRHLRRTHPESKMIKTDPDAPPQQVYPCKLCAKVFMTEKRLLHHQASHLRKHNWIICKFCGKKTISMKSHRIHIKGHLTEKHVDNPLKCPHCNETFIKGYALHHHLRDVHEIDETWIAEIGDQPFNGPLKDLQCSVCLKVLASKGNYERHIDYHNSLRCNYCFEYFSTLKFLEGHLAFGCEKRNLIGETEVYPKKVKCHICYKAFHVQVKLDCHLRTQHNIKVNRESKQGNKNIVCDYCFRVFENEDSLTTHKIYHRTVGYYGCIYCNRKFNTLTVYRKHKNHHFSQLNEDNPTKCEHCDETFVAFRDMIYHMRDVHGDKKEWIIMPKETIEEECNICHKRFYNLHRHIRYHEENRCKKCGEYFYSRGDYDNHLCAIDSDEDPESNEKDLRPKYDECTFCFKPITKTSSKLKHDLIHKSSGSISCRFCALKFNTIDAFNIHAFSHRSRKYTKSPLKCSHCSEKFIRYGPFIKHMKEVHKSKIKMHYRATILPERCIVCGDSFPNLHNHYRAHLQHQCQNCSKYFTSNKLFLAHDCSKPDADPSKVFTCDENLLIHINSYMPKDLNKELKYYGQVEDEETNGEPETNDDESQNSTDNRMPLSIQSPIISEILSLYKEKKVNVESKTVKEQIIKKENEIEDDDIVEIVENGPTEKQFLTITIDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -