Lfer026139.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Luffia ferchaultella
Gene Symbol
ZNF296
Assembly
GCA_949709985.1
Location
OX453265.1:6758639-6771122[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.77 67 5.1 0.2 3 23 106 126 104 126 0.96
2 15 0.00025 0.022 16.0 2.0 1 23 184 206 184 206 0.99
3 15 5e-06 0.00043 21.4 0.5 1 23 212 234 212 234 0.98
4 15 0.0037 0.32 12.3 4.6 2 23 240 262 240 262 0.92
5 15 1.3e-05 0.0011 20.1 0.6 2 23 409 430 408 430 0.97
6 15 0.00013 0.011 16.9 3.3 1 23 436 458 436 458 0.99
7 15 0.52 46 5.6 6.7 1 23 535 557 535 557 0.96
8 15 0.0022 0.19 13.0 0.5 1 23 564 586 564 586 0.98
9 15 1.6e-05 0.0014 19.8 2.2 1 23 592 614 592 614 0.99
10 15 6e-05 0.0052 18.0 2.8 1 23 620 642 620 642 0.98
11 15 0.0026 0.22 12.8 2.1 1 23 651 673 651 673 0.98
12 15 0.00013 0.011 16.9 0.8 2 23 723 744 723 744 0.97
13 15 0.015 1.3 10.5 5.2 1 23 764 786 764 786 0.97
14 15 3.5e-06 0.0003 21.9 0.7 1 23 792 814 792 814 0.97
15 15 9.2e-07 8e-05 23.7 2.5 1 23 820 843 820 843 0.98

Sequence Information

Coding Sequence
ATGGATGATATGAACAATTTGGACATTGATCCTTTAAGTAGTGCAACTACTACGGTGTATCCGCAATTTGAAAATGGTTTTCAAAACCAGATAGATCAAGAATCATTTCTTAGAAACCTGTGTATAAAAGCTGAACTAAATGACCAGAATACTATACAAAATGACCAAGAGGACACAGAaaaaaatgatgatgatgacaaacAGTCAGAAAGCCATAACTTAACCGAGAACGAAACCCCAAATGTAACGGATCTGATAAACCAAAACATCAACCAGACGCTTCAAGATATATTACCGCAGTTCCCATTCTATGGATGCGCTGTCTGCAATATATCATACTTGACTTTAACCGATTTGGATCATCACATGGCAATACACAAAGACCGATTAACATCTTGGGATCTACGGCAAAGAGCGAAAgacaaaaaaaaggaaaaattgaaGAAGAGAATAAAAAAAGAAGCAGAAGACCCGTCTGCGCAGCCAagcgacaaaataaaaaaagaagaccTCACTGAACAGAATATGGATGATAGTTTAgagaaaatattcaaatgcgGAGTGTGTTATAAACAGTTTTCTTTAAGTTATTATCTCAAATTACATGTAAGATCTCATACTGGGGAGAAGCCTTACCAATGTTCTGAATGTGGCATGTCATTTATAACTGCCAGTAAGCTGGGCAGGCATAGAAAACTACATTCAACAGTTAAAGCAGAATGTCGAATATGCCACAGGACGTTCACAAGATTTGAGTATCTCACTAAACATTTTGATAAGAAGCATTTGGAAGAGAAATTAGAAGGGGAACCTTATGATTACAACGCAATCTTGCCGTATCTCAAAGAATTGGAATCAGAGCTAGAAAAACGCAAGCAAGAAGATTCCCAAGCTAAAGTGGAAGATGACTGGTTGACGAACACCGAAGTCAAGAATGAAATTCACACAGACGTAAAAATCGAGCAAATCAAAACTGAACCAGATTTGATCAGTTCCGATCATGAGAACTACGAAGTGCCCCTCAATAAAGTCAAAGAAGAAGAtGCATCATCATCAGATTACTTCCCCGAAGACACAGCCGCTGATACCTCAATGGAAATCGAGAAGAGTCCCGTGAAGACCAAACGCAAGACTAAAAGACCAAAGACCCCAGtttctgatgatgatgacacccAAGACGAAAAGAAAccagaaataaatttttctatggAAGGCGACCATTTGAAATGTAAAGTGTGTGATAAAATAATCAAGACGCCGTCATATATGAGGATCCATATGCGTACGCACACAGGCGAAAGGCCCTACAAGTGTTATATATGCCAGAAGGGTTTCATAACTTCGAGCAAGATGCACCGGCATGTCCTTACACACATGGAGGCATGGGAAAGTGGTGACGCCGAAGAGATAACTGTGAAAGTCGAAGTGGACTGGGTCAACGGAAACAGAAACGAGAATGAGGCCGCAAAGGATAACGAAGCGAAGACCGATTCCAATCAATCGGAGAATGAGACGGAAAAATCTAGAAAGCGGCGAAAGTTTTTGAAACGCCACATCAAACTTGAAATGGCCGAAAAGAGTAAAAAGCGACGCAAGCGCCCTCACGCGTGTGAATTCTGCCAAAAGAGATTTCTGCACCTAGAGACCCTACACGTGCATAGAAGAATGCACAGAGGGGAAAAGCAGACGTTCGTCTGCCACTTTTGCCTGATAAAGTTCGAAGACGAAGAAGATTTGAAAGTGCATCTGATTTCGCACACCGGACCAAAACCTTACGTTTGCACACTGTGCGGTAAAAGATATAAGAGAAAGGACACAATGATCTATCACAGAAGGATGCATAAAATGGAGAAGAAGTTTCAATGTAACGTATGCAGTAAAACCTTTACGGCGCCGTGCAAACTTCAAAGGCATTTATTGAGTCACAGACCGGACAAATACGTCATAAGGTATGAGTGTCCGGTGTGTGCTCATATTTTCAACACCAAATACCACATAGAGATGCATTTGACTACGCACGAAAAAGAAGGAGTTATACTCGAGGAGAATCGTGGCGAAATTTTAGCTATGGTACTTCAAAACGCTAGAAAAATCCAAGTTCCAACTAAAGGCGACGCGCCGGTACCGAATTTCAAAGATTTGATGCCTAGCGACGAGCGTTCGAGGGTCTGCAATATTTGCGGAGAGATCTTCAACCATTTCTTTTATTTGGAAGAACACCTCAAGACCCACGGTTCTAAACTAGAGCTGGGCAAGACGGACGCGCAAGCAAAAGAAGACGAAAGAAGGTACAAATGCCAAGTGTGCCAGAAGGGTTTCAAACTGCATTACTATTTGAAACTTCATAGTTTTACCCACACCAAAGAGAAACCTTTCATATGCCAGCAATGTGGCAAAGGCTTCATAACTAAAGGTAAATTGAAAAGGCATTTAGAATCCCATACGGGCTTGAAGAAATACCAATGCCATATCTGTTTGAAGTTCTTCACCAGGCCCAGCTATTTAAGAATCCATGTACGTACGATACATGGTAGAAACGAGAATTCTGATTTCAGACACGATATTATGTCTATACCCCTAGCTTCTACTTGTCTGTCGGTTTTGACgcaagattaa
Protein Sequence
MDDMNNLDIDPLSSATTTVYPQFENGFQNQIDQESFLRNLCIKAELNDQNTIQNDQEDTEKNDDDDKQSESHNLTENETPNVTDLINQNINQTLQDILPQFPFYGCAVCNISYLTLTDLDHHMAIHKDRLTSWDLRQRAKDKKKEKLKKRIKKEAEDPSAQPSDKIKKEDLTEQNMDDSLEKIFKCGVCYKQFSLSYYLKLHVRSHTGEKPYQCSECGMSFITASKLGRHRKLHSTVKAECRICHRTFTRFEYLTKHFDKKHLEEKLEGEPYDYNAILPYLKELESELEKRKQEDSQAKVEDDWLTNTEVKNEIHTDVKIEQIKTEPDLISSDHENYEVPLNKVKEEDASSSDYFPEDTAADTSMEIEKSPVKTKRKTKRPKTPVSDDDDTQDEKKPEINFSMEGDHLKCKVCDKIIKTPSYMRIHMRTHTGERPYKCYICQKGFITSSKMHRHVLTHMEAWESGDAEEITVKVEVDWVNGNRNENEAAKDNEAKTDSNQSENETEKSRKRRKFLKRHIKLEMAEKSKKRRKRPHACEFCQKRFLHLETLHVHRRMHRGEKQTFVCHFCLIKFEDEEDLKVHLISHTGPKPYVCTLCGKRYKRKDTMIYHRRMHKMEKKFQCNVCSKTFTAPCKLQRHLLSHRPDKYVIRYECPVCAHIFNTKYHIEMHLTTHEKEGVILEENRGEILAMVLQNARKIQVPTKGDAPVPNFKDLMPSDERSRVCNICGEIFNHFFYLEEHLKTHGSKLELGKTDAQAKEDERRYKCQVCQKGFKLHYYLKLHSFTHTKEKPFICQQCGKGFITKGKLKRHLESHTGLKKYQCHICLKFFTRPSYLRIHVRTIHGRNENSDFRHDIMSIPLASTCLSVLTQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-