Lfer026067.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453265.1:5602313-5605808[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.021 1.8 10.0 0.2 1 22 85 106 85 108 0.89 2 22 2.7 2.4e+02 3.3 0.1 2 23 135 157 134 157 0.92 3 22 0.0029 0.25 12.7 1.5 1 23 180 202 180 202 0.98 4 22 5.5e-05 0.0048 18.1 2.0 1 23 206 228 206 228 0.97 5 22 0.053 4.6 8.7 0.3 1 23 262 285 262 285 0.89 6 22 0.0023 0.2 13.0 0.7 1 23 292 315 292 315 0.97 7 22 0.3 26 6.3 0.5 1 23 362 384 362 384 0.91 8 22 0.14 12 7.4 0.1 2 23 410 432 409 432 0.94 9 22 0.16 14 7.2 2.2 1 21 454 474 454 476 0.95 10 22 0.00094 0.082 14.2 1.5 1 23 480 502 480 502 0.97 11 22 0.17 14 7.1 0.1 1 23 507 530 507 530 0.91 12 22 3.3e-05 0.0028 18.8 1.0 1 23 536 559 536 559 0.97 13 22 0.003 0.26 12.6 0.1 1 23 624 646 624 646 0.96 14 22 4.1 3.6e+02 2.8 0.5 2 23 670 692 669 692 0.89 15 22 0.014 1.2 10.5 1.5 1 23 713 735 713 735 0.98 16 22 0.0012 0.1 13.9 1.8 1 23 739 761 739 761 0.98 17 22 0.23 20 6.7 0.4 1 23 766 789 766 789 0.89 18 22 9.1e-05 0.0079 17.4 3.0 1 23 795 818 795 818 0.97 19 22 0.0069 0.6 11.5 0.4 1 23 824 847 824 847 0.96 20 22 0.0015 0.13 13.6 0.4 1 23 853 875 853 875 0.97 21 22 1.8e-06 0.00016 22.8 0.5 1 23 881 903 881 903 0.98 22 22 0.00092 0.08 14.3 6.0 1 23 909 931 909 932 0.96
Sequence Information
- Coding Sequence
- ATGAGGATTTTGTACATAGTGAATTCGtttcttttatttgtaggtTTCGAGGATGAAAATGTAGGCGCGGTTAAACGCGTTAGGAAGTTAAAGGAGAACGTTAGCGCTCGGCAATTGCGTCGTCGGAGACGGGCGAACAACGAGTTTCCAGACTTATCGAAGAAAAGGATCGCCAAGACCATGATGAGGAGGAATGCCATGGTGATCATGGAGTTCTCCACGGCATGGGCCTTCCGATGGTGGCGCAATTCATTTTTCTGTTCCTATTGTGATGGAAAATTTGTCGATGCTAGTCCTCTCCGCGAACACGTTTTTGCTTTACATTTAAACGAGCCGCCTACGAAGAGAATTTTCTCCAAACTTAGggaaaataatatgttaaaagtCGATGTTGGATCGTTAAGATGTCGTTTGTGCGGATTCGATTTGGACGGTGTGGACACTTTAAAAACGCATCTCAATGCAGTTCACGGGAGAGTAATGCAGGAAAACTACAGCGATGGAATACTCCCGTTTAAGTTAAACGATGACTCCGGTTACTCGTGTCAGAAGTGTCTCGACAGTTTCGTCAGTTTTTCGAAGTTGAACGAACACATGAACACGCATTATCGGAATCACGTGTGCGATTCTTGCGGGAAAGCGTTCGTCTCAAAGTCTAGATTTAGAACCCACATCCAGTCTCACGAAAAGGGAATGTTCCCTTGCGGGGAATGCGACGAACTGTTAGAGACCCGGGCCGCCCGGGTGTGTCACAAGTTTCGTGTACACAAGAAAGGTATGCGCTACGTTTGTCCGCGTTGTCCTGAAATATTCACGACTTACCTGTCGCGCGCAAGACATTTGGTCCAGTTTCACGCTCAGAGGCCAAAAGAGTATCCATGTAATATATGCGGACGCGTATTTGAAGCTAGTTGCAAACGCGCTTTGCATATTAGGACAACGCATAGGATTCTAGAACgaaGGAAAGTGACCGCCGATGCGGTAAAGTGGAAACGGAAAAGCCGGTTCGAAGAGGACAAAGCGAATGCGGCTATCATTATAGAATGTTCGAACGTGACACCGTTTCGATGGAAGCGCGGACGTTTCTTGTGCGCGTACTGCCCTTTCGTCTGCCCCAACCCGACCGACGTACGGACTCACACGGTCCAACACAAACAACGTCTTAACGTCTTGACACGCGGCGACGTCCGAAACACATTTCCCGTCAGAGTCGAAATATCCAATCTCAAATGCGAGCTATGTGAAATGAAACTAGAAAATCTGGACGCGCTGAAAGACCATCTAATTAACAGACATTCCAAACCCCTCAACTCTAAATACGCGGACGGCATAATACCTTTCGTTTTGAGCGAGAAAACGTTTAAGTGCGTGCGTTGCGAAAAAATCTTCGAAGTTTTCGTCAGCCTTAGTAACCATATGAACTGTCACTACCCCAGTTTTATTTGCGATTCTTGCGGGAAAGGGTTCGCCGCTAAACATAAGCTTCGGACGCATAAAATAACCCACGACACTGGCGAATACCCTTGTGCTAAATGCGGCTTGGTGTCCACGACCCGCGCCTTTAGGAATAGACACGTGGCTCTGGTTCACGGGCCCAAGAATAGGTACAGATGTCCGCATTGCGGTGAAACTTTCGGGAAGTACAGCGACAGGATTAGGCATATGGCCAAAGTTCACGGTAAAAAATTGGAATATCGCTggtccAACGAAAAGGGCATGACCCAAGAACCTATAAAGCGGGTCGAGTCTACTCCTAAAATAAATTGGACACCCTTCCCGCGAAAGGGTGAATTTGAGGAGGAGAAACATAATATTCGTACAATACTAGAATGTTCGAATGCAATGCCTTTTCGATATCATAGAGGGAAATTCGTTTGTGGCCTATGTCCCAAAGAATTCACTGAAGGCTCTGAATTGAGGCTTCACACTAGCGAACATACGTCTAAGCTCACACTCTTAAAAGACCTGAGATATGATAAGATATTGAAAATCGAGATCACCGATTTAAGATGCGTACTTTGTTATGAGAACTTTAccgattttgaaattttcaaaaaacaccTCACGGAGGAACATTCCAAGCAATTTTTCGTCGAGTGCGGAGACGGTGTCATACCTTTCCGTTTGAGCGGCGGTTACCGTTGCGTTTTCTGTGATGAGGATTTTCAGTTTTTCTTGATGCTGAACAGGCACATGAATAGTCATTACACGAGCCACGTTTGCGACTTCTGCGGGAAAGGTTTTCTGGATCACAGTAGGCTCAATGCTCATATCATGACCCATGAAACAGGAAGGTTTCCATGTACAAAGTGCGAATTGGTTTTCGATACACTCAGCCGCAGGAATATTCATTTCGCGAAAGCGCACAGGTCAAAAAATCAATATAGATGCCCGCATTGCGATTTTAAGTTTACATCTTACAGCGCTCGCAATCGGCATTTAAGGGAGGTTCACGGAAAAGTTATCGAGCACAAGTGCCCTTTATGTTCAGCAGTCTTCGCTTCGTCCAGTTCAAGAAGTCTCCACGTGAGGCTAGTACATTCAGAAAGGAAAGAACACACGTGTTCGATTTGTCCAGCCAGATTTGGTACTTCCTGGCTGTTGAAAGACCATCTAGTAAAACATACGGGCAAGAAGGAGTTTGAATGCAAAGTTTGCAACAAGGCGTATGCAAGGAAGAAAACACTAGTGGAGCACATGAGAATTCATAATAATGATAGAAGATTTGTTTGTTCGATATGTAGACAGGCGTTTGTCCAAAATTGTAGTTTAAAACACCATTTAAAAGTACATCACCCAGACGCGGTCCAGTGTTGA
- Protein Sequence
- MRILYIVNSFLLFVGFEDENVGAVKRVRKLKENVSARQLRRRRRANNEFPDLSKKRIAKTMMRRNAMVIMEFSTAWAFRWWRNSFFCSYCDGKFVDASPLREHVFALHLNEPPTKRIFSKLRENNMLKVDVGSLRCRLCGFDLDGVDTLKTHLNAVHGRVMQENYSDGILPFKLNDDSGYSCQKCLDSFVSFSKLNEHMNTHYRNHVCDSCGKAFVSKSRFRTHIQSHEKGMFPCGECDELLETRAARVCHKFRVHKKGMRYVCPRCPEIFTTYLSRARHLVQFHAQRPKEYPCNICGRVFEASCKRALHIRTTHRILERRKVTADAVKWKRKSRFEEDKANAAIIIECSNVTPFRWKRGRFLCAYCPFVCPNPTDVRTHTVQHKQRLNVLTRGDVRNTFPVRVEISNLKCELCEMKLENLDALKDHLINRHSKPLNSKYADGIIPFVLSEKTFKCVRCEKIFEVFVSLSNHMNCHYPSFICDSCGKGFAAKHKLRTHKITHDTGEYPCAKCGLVSTTRAFRNRHVALVHGPKNRYRCPHCGETFGKYSDRIRHMAKVHGKKLEYRWSNEKGMTQEPIKRVESTPKINWTPFPRKGEFEEEKHNIRTILECSNAMPFRYHRGKFVCGLCPKEFTEGSELRLHTSEHTSKLTLLKDLRYDKILKIEITDLRCVLCYENFTDFEIFKKHLTEEHSKQFFVECGDGVIPFRLSGGYRCVFCDEDFQFFLMLNRHMNSHYTSHVCDFCGKGFLDHSRLNAHIMTHETGRFPCTKCELVFDTLSRRNIHFAKAHRSKNQYRCPHCDFKFTSYSARNRHLREVHGKVIEHKCPLCSAVFASSSSRSLHVRLVHSERKEHTCSICPARFGTSWLLKDHLVKHTGKKEFECKVCNKAYARKKTLVEHMRIHNNDRRFVCSICRQAFVQNCSLKHHLKVHHPDAVQC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -