Lfer005666.2
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453244.1:7114693-7126018[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.1 8.9 7.8 0.9 3 23 677 698 676 698 0.96 2 22 0.57 49 5.5 0.2 1 21 1097 1117 1097 1118 0.96 3 22 0.00019 0.016 16.4 0.8 3 21 1194 1212 1192 1213 0.94 4 22 0.82 72 5.0 0.0 3 23 1222 1243 1220 1243 0.89 5 22 0.013 1.1 10.6 0.2 3 23 1264 1285 1262 1285 0.95 6 22 0.0043 0.38 12.1 1.5 1 23 1291 1314 1291 1314 0.93 7 22 0.15 13 7.3 0.0 1 23 1340 1363 1340 1363 0.90 8 22 0.022 1.9 9.9 3.4 1 23 1368 1390 1368 1390 0.97 9 22 0.023 2 9.9 0.3 1 23 1396 1419 1396 1419 0.95 10 22 0.0027 0.23 12.8 1.3 1 23 1432 1454 1432 1454 0.97 11 22 0.00021 0.018 16.3 1.8 1 23 1505 1528 1505 1528 0.97 12 22 0.07 6.1 8.3 5.1 1 23 1586 1609 1586 1609 0.94 13 22 0.003 0.26 12.6 1.5 3 23 1632 1653 1630 1653 0.95 14 22 0.1 8.8 7.8 0.1 2 23 1659 1681 1658 1681 0.93 15 22 6 5.3e+02 2.2 0.2 1 20 1726 1745 1726 1747 0.82 16 22 0.0014 0.12 13.6 0.6 1 23 1757 1779 1757 1779 0.93 17 22 0.00046 0.04 15.2 0.4 2 23 1870 1892 1870 1892 0.92 18 22 1.6e-07 1.4e-05 26.0 1.3 3 23 1899 1919 1898 1919 0.98 19 22 0.0041 0.35 12.2 0.5 1 23 1938 1960 1938 1961 0.95 20 22 0.11 9.6 7.7 0.0 1 23 1984 2006 1984 2006 0.98 21 22 0.015 1.3 10.5 1.1 1 23 2012 2035 2012 2035 0.93 22 22 0.00017 0.015 16.6 0.5 1 23 2043 2066 2043 2066 0.97
Sequence Information
- Coding Sequence
- ATGACTGCGAGTTATGACTGTGTTTGTAGACTGTGCTTGTCATCTCGTGGCGAATTACTGGCGATTTTCCCTGCTAGCAGTTCGGACGGACCGAGATCTCCCGTTCTGGCGTCGAAAATCAAAGCGTGCGTCGCCGTACAGATAAGCGAAAATGACGATCTGCCTACCAAAGTGTGCAGAAAATGTTTGGACAATGTCAATAActggtatatatttaaaaaggtcTGTGAAAGAACACAGAACAAACTGCACAATTTGATGAAAAAACATAGTAGCCTATTGGATGAAgtgaaaattaaaaacgagCCTTTGTCTGATGAAGCTTATGACGATGGGGTCCTCATTGATGGTTCATATCCGGACTATGAACAGAATGCCACATCATCAAGTAAACTTCAACCCGAGGGTCCCCCGATTTTGGCGTCATTGGGCCTCACGCCGAGGAGTGATAAGAAGTATGTGGATCCACGTTTGGATTGGCAACGTGTGCATGCAATATTGGAACTGGTTCAAGAAGATGAGGTCATTGACTCATTGCAATCAGCCGAGGAATGTGATGTTATTCAGTATTCAGACCACGACTCTGACACAGATGCAGAAATGCTGCCCCATattgatgatgattttattgaCTGCAAAGATGGATACCTGATGAAGGATAGAAGACTTTTATCAAAAACACCAAAGTTGTCCTCTTCTGAAATTACcgcaaaaattaaacaaacattaaaaaccaaaaaatgtAAACAAGATGCCCAAAAACCATGTCCACAAACGAAACATGCCTGGCAGTTAATATTTTCTGAAGACATACTGGAATATATTGTAGAATCCACTAATTATAGCATTGTAAACAATTCAGGTGACACTACGAATGTCAATGAATTAAAGGCACTAATCGGAATACTTTATTTTCATGGTGTTACCAGACCAATATATCAAAAAAGAAGCAACTTATGGGATGATAAAATAGGTGTAAATGTGGTTTGTAACTCAATGTCTCTAGAAAGGTTTAACTTTTTGTTAGAAAATATTCGTTTTGAtaaagaacgacaagaaaatgTTGAATATGACATTATGAAGTCTATGCGCAAAGTGTTTGAAATGTTTGCTTTGAATTGTAGAACGGCACATAACATAGAAAATGTCGCTGTGATAGATGAAGTTATTATTCCAGTTTCTGGCCCATGTCCATTTCGATACAaaatcgaaagaaaaaaaatcgacaGTGGAATGAAGATCGCTTTATTGGTTGACCCGTCTTCTTTTTATGTGAGCAATTTAGAGCTGATAGTGGACAGTTACTACAGTTCCGATGAAATAGTGAAGAGTTTAGTGCAGCATTTGGCTTTCACGAGCAGAACCATTATAATGGATAGTTGGTACACTTCTTTATCTTTAGTAGAGACTTTATGTAATAGATATCAACTGTATTCTGTCGGCGCATTGAATCCTAAAAGTGATGTCATACCACCTATATTTTTATCAGGTCACAGACCATCCGGGAGTTTCATGACGGCATTTATTGATGAGGATAAGGCACTAACTTCATATGTCAATCGCAATTCGAAAGTGATCAATGTCATATCAAGCCATCCAAAGCACTACAAAAGAAGTCACAGCGCAAGCACTTCAATATCAATGTATAAACAGAATCAGTCAGCAGTTGAAGTTTTAAATGTATTGACTCATTATTATACAACTCTGCAATATTGTAACAGTTGGAGTCTGACATTGTTTTTCACTTTACTCGATATTGCATCTATAAATGCTCAAGTTATATGGATATCGCAAAACACTGACAAAGTACTTCAACGTCGTCTATTCATCAAAGAACTTGCTCTGTCTCTTATGGAGGAGGGACTTGATAGTGATAAAGAAGATGAAGAGGAAGAAGAAGAGGAGATAAATGAGGCACCACGATTCACGAAGGTGCCCAGTATACCAGAAGTGTCTATAACCGTCATGCGACCGACGGGAGAGACGCTTCACGCTCGTCAAGGCATCCAACAGCTGGCCTCCAAGGATTGTCTGGTATGCAGCCGCGCATACAGGTATTCTCACAACGCCAGGCGGCACGAATTGACTGCTCATAGCTTCGATCGTTACACCAACAAAATTGTAGCTAAAAAGACTCCTTCACATATGCAACCAAAACTACGGCCTAATCCATTTAATCCTAAGGCTCGATTAATGCCGAATCCTATTAATCATAAGCTGAAACTTATGCCGAAAGCTGTGCCAGCCAAAACGATGTCTCAGAGAGTAATTCCTCAACCTAAAGCGATACCAACTAAACTGGTTCAAcctaaaatacaacaaaatagtTTGCCTTATCCTCTAAGAATTAAAGCTTTGAAGGACTTACAAATTAAGAAGAAGGAACCTCAAATACTTAAAACTTTGCTTACTGCTAAACCAGAAGTCCTAGTGTCTGAACCAGAAATTATGAATTCTGGGCCAGAAAGTCCTGAAACTTTGATTTCCGAGCCAGAAATAGCGTCTTTCCAAGTCGAAACAGTTTTATCAGAGCCTGAAGGTGAAGACGAAGAGGGTGAGGAAGAATTACAAAAAGATAACCTAAATGCTTATGACACCGTGAATATGGATTCGGATAATGAAATAGAAATAGCGCGACAACAAATAAATGAAGAAATGACAGAAAAAAGTATATCCCCAGATGATGAGAATAGTATGCCTGACAAACATGATGATAATGAGAACAACAAAGAAGATGGAGATAGCGAAAACGAAAATGACGAAAAAGTTAACGACGATGAAGATGTTGATATGAATAATGAAGGAGAACTCGACGAAACAATGGACGATAAATTTGAGGACGAAGACAGGAAGGAATTGATGGATAACGATGAAAAAGTAGATGAAGAGCAAGAAGATGCACATGATGATGTACAAGATGATGCACAAAATGagaatgaagaagaagaagaagaattacCACCTATGGGACTGGCTCCTGTTGTAGAAATCAATGAAGATATGCAAACCAACTCTTATAATAGCGAAGCAAATGAAGAAGATGAGGAAGAAGCTGACGAATCCGCCGATGTCAACGATACCACTGACGCTACTGACGCTAATTTGCCTGTCAAAGAGTTGGATCCAGATAAATTGTATGTGACAAAAACTCAAAgagattttatagaaaaatatagagATATAATCCAACAAATTAATACTAAGCGATGTTTGTGTTGTGATAGAGAATATCCTCGCCGGAAAGCTGTTATCCAACATCTGCAGAAAAATGGTCACAAAGTCCCTAAACATACTTGTTATAATTGTGTTGTAACATTCGGTCATATTGGGGCTTTATTGAGCCATATGAGAGCGAATACGTGTACCGATCTCtggaaaattatattcaacGAAAATGGGATCACAGATGACTTGGTACTGGAAGATGAACCTAAAGACACTAAAGTtcaatataaagatattttcaatGCTAGATCGTATGCTTGTAAACTATGCCCAGCTAAATTCCAATTAAAGCAGTTCATTATGAAGCACGTATTTGACGTTCATGAAGATGGACAGTCACATGTACCTTTGGCTTGTGTTCACTGTGGGTCAAGGTTCAAGGATAAGAGTTTGTTAAAGAAACACATACGAAATGGTGAATGCACAGTTTACATAGCATGCGatttatgttctgaaaaattTGTGAATATGCAAGACTTTAATGATCATGCATTAGCTGTACACGCTGGAAGTTTCGACCAATCGGACAACCAATCGAAATGCGTCGATGGTAGACCGACGGACTGCCCTATATGTGGTAAGAAAAACAGTAGCTATCCTAACTTGGTCAAACATTTAAAACTCATTCATAATGAGGAGAAACCCCATTACTGCCAACATTGTGATGCTAAATATGAGCAAGCAGctgatttaaataaacatatttatttagaacACTCTGACAGATCCCTAGGGACTCAAAGCACCCAACCTGACATGTCTATCGTTAAGGAAGAAGCAGAGGAATATCATTATTCTTGTACAGAATGTAATGCTATATTTGAAACCGTTGATGCTTGGACTGATCATCAGGTTGCCGAACATAACCAAGTGGCACATCATTGCGACCAATGTGAGAAGAAATTCCTGCGTCCTTCGGAACTCGCCGAACACAAAAATACTCATCTGCGCGTAAAATTTTATCCATGTAGTGTATGCTCAAACTCTTACAGCACTCCGCAGAAGCTATCTGAACATGTGCAGCAAACTCACCCTGGTGCATCTGCTTACGCTACTGCGGACTCTGAGTTCTTTTGTGACATTTGTATCAGATCATTTAAAAGTCGTCAAGCTTATTCGAACCACATGCGTATTCACGCTAGAGTGCCCACTACTAACAGACGTCCAGGAGATCCAAAAGGGTTCTCTCCGCAGATAATTGGGAAGCCGATCAAACAATTCCCTTTATTACAACCGGAAGGCGGTTTTGTAACATTTAAGCCAAACTCCAATGTTCCTAATGCTCCATATTCCTGTGATATTTGTGGAAAAGGCTTCAtgcataagaaaaatatttggaaacatAAAAAGGTGTTACACGCTGATCTTGTTGGTGATAGACTGGACAGCGAGGAAAACACAATGCAGCCTTCTACTGAAGAAGACGAATATAATAACGAAGAAAATAGTACTGGATTGACCACTCCACAGtttaatagttttaactttTCTAATTTCAATAATGTTCAGCAACCCACAGAAGCGCTACCACACTGTTGCGAAATTTGTTACAAGAGATTTCCACTCAGAACCAGCTTGTGGAAACATAAACGGGCCAAACACGGTATTATTAATCCAAGTAGTAGCGGCGAAAATCAAGCCGTCGGTGGTGAAGCTGGTCGTTCTAACTGCACCATATGCAAAATCACATTTGCAGACAAGAAATCTTATTATAGACATAGAAAAAACGTGCATAAATCGACTCTCCAAATGTGTAAAATTTGTGGGAAACCTCTGAATTCTACTTTGGAGCTCTATGAACATTTGAAAGCGGCTCATGCTCGTGAGTTGTTGGGATATAACGCTAATCAAGGTGCAAGCAAGGGTCAGGAAGCTCAGCAGAACGAATTGGACGCTGACTATGAAGGTGATCAAGACTCTGTGGATCCTACTGCTGAGTATCAAGCGCGCTACCCTTGTGAGGCTTGTGGAAAGCAATTTCTAGGTTTACTAGCTCTACAAAATCATCAATGCCTCAATCAGATTCCCTCGCAACCGCAAACTTTTGATTGCGAGATATGTCACAAAAGCTATACGTCAATTGCAGCCCTAAAAAGTCATCGCGGCTGGCATCTACGTTCGCCGGATGGTAAGGCGGCCGCTAACAACACGGGTCTGTGGATGCCGCAGCACAAGGTCACCAGCAAGGTCAGTAAACATGAGGTTGTCGATCCCGTGCAGTTGACTCGTGCTGTGCACACTGCGCCCATCGCGTTGCCCGCTAAACGGCGTTTGCCGCCCGAGGTCGAAGTTACCGTCGTCAACCCTAATAAGAAACTGCGCTCTGATGATTCGGGCGAGGCCGACCAACAGTACGGCAGTACGGGTAACCTCGAAGACCGGTACTGTTCGCTCTGCGACAAGGAGTTCACGAAGCGCGCCGCCTACCAGAGGCATATGGACGAAGTACATCAGCCCAATTCTGTGTTTTGTCCAGTCTGCGACAAAAGTTTCACGCGGAAATCGACACTACTCGTTCACATGCGCAAGCATACGGAGGGCGAGACCGCAAGTTCAACCAGTGCTGCACCGACTGACGGCGAATCATACGCTTGCGATTTGTGTGGCGCTCAGTATAACTCGAACAAGGCGTTGCGCATACACCGCGCTCGCCACCACGGCGAGGATTCGGCCGACTCTGACGACGAGGCTGTGTCGACAGCGGCTGCCGCTCCGCCTGGCGAGTTCACGTGCTCACAATGCGGCGATGGCGTGGCGACGCCACGCGATCTCCTGGCGCATCGTACGATGCACGCGACACCTACTAAGTTCCTGTGTCACATCTGCAAGGTGTACTTCTCGCGTGCACTGGACTTATCTGCCCATACGCGGGGACGGCACAGCGACAACGAGAAGGTTTTTTTTCCTTGCGCCATGTGTGACCGCTTCTACATGAATAAGAAGAGTCTACAACGGCACATCGAGACTGCGCACTGA
- Protein Sequence
- MTASYDCVCRLCLSSRGELLAIFPASSSDGPRSPVLASKIKACVAVQISENDDLPTKVCRKCLDNVNNWYIFKKVCERTQNKLHNLMKKHSSLLDEVKIKNEPLSDEAYDDGVLIDGSYPDYEQNATSSSKLQPEGPPILASLGLTPRSDKKYVDPRLDWQRVHAILELVQEDEVIDSLQSAEECDVIQYSDHDSDTDAEMLPHIDDDFIDCKDGYLMKDRRLLSKTPKLSSSEITAKIKQTLKTKKCKQDAQKPCPQTKHAWQLIFSEDILEYIVESTNYSIVNNSGDTTNVNELKALIGILYFHGVTRPIYQKRSNLWDDKIGVNVVCNSMSLERFNFLLENIRFDKERQENVEYDIMKSMRKVFEMFALNCRTAHNIENVAVIDEVIIPVSGPCPFRYKIERKKIDSGMKIALLVDPSSFYVSNLELIVDSYYSSDEIVKSLVQHLAFTSRTIIMDSWYTSLSLVETLCNRYQLYSVGALNPKSDVIPPIFLSGHRPSGSFMTAFIDEDKALTSYVNRNSKVINVISSHPKHYKRSHSASTSISMYKQNQSAVEVLNVLTHYYTTLQYCNSWSLTLFFTLLDIASINAQVIWISQNTDKVLQRRLFIKELALSLMEEGLDSDKEDEEEEEEEINEAPRFTKVPSIPEVSITVMRPTGETLHARQGIQQLASKDCLVCSRAYRYSHNARRHELTAHSFDRYTNKIVAKKTPSHMQPKLRPNPFNPKARLMPNPINHKLKLMPKAVPAKTMSQRVIPQPKAIPTKLVQPKIQQNSLPYPLRIKALKDLQIKKKEPQILKTLLTAKPEVLVSEPEIMNSGPESPETLISEPEIASFQVETVLSEPEGEDEEGEEELQKDNLNAYDTVNMDSDNEIEIARQQINEEMTEKSISPDDENSMPDKHDDNENNKEDGDSENENDEKVNDDEDVDMNNEGELDETMDDKFEDEDRKELMDNDEKVDEEQEDAHDDVQDDAQNENEEEEEELPPMGLAPVVEINEDMQTNSYNSEANEEDEEEADESADVNDTTDATDANLPVKELDPDKLYVTKTQRDFIEKYRDIIQQINTKRCLCCDREYPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRANTCTDLWKIIFNENGITDDLVLEDEPKDTKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVFDVHEDGQSHVPLACVHCGSRFKDKSLLKKHIRNGECTVYIACDLCSEKFVNMQDFNDHALAVHAGSFDQSDNQSKCVDGRPTDCPICGKKNSSYPNLVKHLKLIHNEEKPHYCQHCDAKYEQAADLNKHIYLEHSDRSLGTQSTQPDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQTHPGASAYATADSEFFCDICIRSFKSRQAYSNHMRIHARVPTTNRRPGDPKGFSPQIIGKPIKQFPLLQPEGGFVTFKPNSNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVGDRLDSEENTMQPSTEEDEYNNEENSTGLTTPQFNSFNFSNFNNVQQPTEALPHCCEICYKRFPLRTSLWKHKRAKHGIINPSSSGENQAVGGEAGRSNCTICKITFADKKSYYRHRKNVHKSTLQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGASKGQEAQQNELDADYEGDQDSVDPTAEYQARYPCEACGKQFLGLLALQNHQCLNQIPSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNTGLWMPQHKVTSKVSKHEVVDPVQLTRAVHTAPIALPAKRRLPPEVEVTVVNPNKKLRSDDSGEADQQYGSTGNLEDRYCSLCDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMRKHTEGETASSTSAAPTDGESYACDLCGAQYNSNKALRIHRARHHGEDSADSDDEAVSTAAAAPPGEFTCSQCGDGVATPRDLLAHRTMHATPTKFLCHICKVYFSRALDLSAHTRGRHSDNEKVFFPCAMCDRFYMNKKSLQRHIETAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -