Lfer026012.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453265.1:5152709-5169297[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0015 0.13 13.6 5.9 1 23 53 76 53 76 0.96 2 21 0.00038 0.033 15.4 1.1 3 23 85 106 83 106 0.95 3 21 0.00018 0.016 16.5 1.8 1 23 113 136 113 136 0.96 4 21 0.0014 0.12 13.7 4.6 1 23 142 164 142 164 0.98 5 21 0.0001 0.0091 17.2 3.2 1 23 170 192 170 192 0.98 6 21 1.2e-06 0.0001 23.3 0.5 1 23 198 220 198 220 0.98 7 21 0.00011 0.0098 17.1 0.2 1 23 273 296 273 296 0.96 8 21 1.5 1.3e+02 4.1 0.1 2 23 322 344 321 344 0.88 9 21 0.015 1.3 10.5 1.1 3 23 369 389 367 389 0.96 10 21 0.067 5.8 8.4 0.2 1 23 393 415 393 415 0.97 11 21 5.5 4.7e+02 2.4 2.4 1 23 420 443 420 443 0.75 12 21 0.0011 0.094 14.0 1.1 2 23 450 472 449 472 0.94 13 21 4.1e-07 3.6e-05 24.8 1.2 2 23 478 500 478 500 0.97 14 21 0.071 6.2 8.3 0.0 2 23 613 635 612 635 0.96 15 21 0.0064 0.56 11.6 0.2 2 23 659 680 658 680 0.96 16 21 0.0013 0.11 13.8 2.7 1 23 684 707 684 707 0.96 17 21 0.0077 0.67 11.3 1.3 1 23 712 735 712 735 0.96 18 21 0.0016 0.14 13.5 4.7 1 23 771 794 771 794 0.98 19 21 7.7e-05 0.0067 17.6 1.2 1 23 800 822 800 822 0.98 20 21 8.4e-06 0.00073 20.7 0.8 1 23 828 850 828 850 0.98 21 21 0.0011 0.092 14.0 5.7 1 23 856 879 856 879 0.98
Sequence Information
- Coding Sequence
- atgaaaaaaagaaatccatataaaacaaaaaaccaaaatcGATCAAACAATCATGGAATTATAAAGTTACTTAATTCCTTCAATGTCGAAGAAATTCAAAAAGATGGCACAAGTTATGTCGTCAAAGATGAAGATTTCACTCTAAAAGATTCAAGATATATATGCAATCGCTGCAACCATTCTTATTCTGACAAACACGGTTTGCGTAAACATTTGAAATACACCCACGATAGGGTCGGTGGTCGTATGATATGTCCACATTGTAACAAAAGGTATGTGTTAGTGACTCAGCTTAAAAGACACTTAAGAGAAGAACACGACGCGAACGAAAATTTATATTCGTGCGGCGCCTGCGACAAATCATTCTCTACGAAAAAAGCTCTGGACAACCATCACAGAGGTTATCATTTACAagagaaaaatttcaaatgtgatTTGTGCGATTACCAATGCTATCAAAAGCAGTTGCTACAAAATCACATGTCCAAACATAGCGACGAGAGAAAATATAGGTGTAGATACTGTACGAAAACGTTTAAAAGGTGGAACGAACGGCTCAGACATGAAAGGATCCACACAGGTCACAAACCTTATGAATGTACAGCTTGTGGCAAAACGTTTGCTCAAAAAGCAAGTCTCAACTACCATATGAGTACACACACTGCACAAAGCGACATTTGCTTGTGGAGTTCTAGAGCGAAAGAACGGAGATCACGTTTGAACCACGTCACAGAGCAAGCGAAACAGAGATGCAATTTGACTACATTACTGAAATATTCCAATGTCACCCCTTTCAAAGAAAGAACAGCCCTGGGCTACCATTGCGCGTATTGTTCAAAAGCTTTTCCAGATCCCGAAGAGTTGATAGCACACAGCCGCAACGAACATAGAAATGAAAGACTCGTGTATAAAGCTGGTGTTTTAGTGAATAAATATGTAGCGTTCCTTGATATTACAAatctaaaatgtaatatttgtaaaactgGTGTAGACGATTTGAAATCTATGGTCGATCATTTGACAGATGTTCACAAGAAAACGTTTTACAAAGACATTCCAGATTACATTCAACCGTTTAAGCTGTCAGCCGGCAAAGCGATGGCGTGTTGTCTGTGTACCGAAGTATTCGATAACTTCAAAACGTTGGCGTCGCATATGAACGAACATTACAGGAATTTCGTGTGCCAAATATGCGGAATGGGATATTTGAACAAGCAGCGCCTATCTCGCCACGAGGCGACGCATGTAAATGGAAAATTTCCTTGCCAGTATTGTCATAAGATCTACCTCACCGACCAGAAAAAGAAGAGTCACGAACGTTCCATTCATTTAGGGTACGCCGACAGTAAATGTCAGATTTGTCAGCAGAAATTTACGAATTCTTATCAAAAGGCCAAGCATATGGCCGAAGAGCACGACGCCGATTTAGCGAAATGTCGAATTTGCGGGAAAACGTTCGTCACGAAAGCGTTACTTAAAATCCACATGAGAAGGAACCATTTCAAAGAAAGATCTCACGAATGTGATGTTTGTAAACTCCGCAAAAGGGAAAAAACGAAACTGGACAAACATCGAGTCGCTTGGACTAAGAAAACACCGGAAGACTTGGCCAAACAGCAATACAACTTGCTGAATATCTTGCAACTTTCTAACGCCACTCCTTTAAGGAGTAAGACCGGGCGAGGTTTCAATTGCGCTTTCTGCGCCGACGTCTTCCAAGAGCCCGCCGATTTGAAAATACATAACATAAAAGAGCACAAAGATTTGAAACCTAAATCTATTATGAACAAAAAGATCTTGTACGGAAACTATGTTAAATTAGACATAACAGCTTTGCAGTGTTCGCTTTGCGGCGTTCCTCTGGACAAACTGCCGAATCTCATTGAACATCTGAAAATCGGTCACGACAGAAGACTGTATACCGACGTCGAAGACAGGATTTTACCTTTTAAATTCGATACAATGGACGTGACGAGATGCGTCGTATGTTCGGCCGAATTCGTTTCCTTCAACATGCTACAGAGACATATGAACGCCCATTACCGCAACCATGTTTGCGACGTCTGCGATTCGGGCTTCGTGAACAAACGGCTACTCCGCCACCACATCAAATACACCCACCAGCTCGGCGAGTTTCGGTGTAACTTCTGCGAGAAGGTCTTCGGCACGTTGAGCAAGAGGAACGATCACGAGAAATCGGTTCACTTCGGCTTCAAGAGGAACAAGTGCGCTTATTGTTCGGAACGTTTCGTTTGTTATAAAAAGAGGAATAAACATGTCGTGGAGGTCCACAATAAACCGCCAATAGTATACAAATGTCACGCCTGCGACAAGACTTTCGACATGAGGTACAAATTGTCACAGCACACCAAGAAGGACCATTTGATGGAGAGGAAGTACGAATGTAACGTTTGCGACATGAAGTTTTTCATGAAGAAGGAATTAGAGAAGCACATGGTGAAGCACAGCGGCGAGAAGAATTATAGTTGTGAAGTCTGTTTAAAGACATACGCGAGAAAGAATACTCTTAGAGAGCATATGAGGATACACGCTAACGATCGGAGATTCAAGTGCGATAAATGTTCCCATGCGTTTGTACAGAAATGCGCTTGGAGAAGTCACATGCGTACTAAACACGATGTCACTGTCtga
- Protein Sequence
- MKKRNPYKTKNQNRSNNHGIIKLLNSFNVEEIQKDGTSYVVKDEDFTLKDSRYICNRCNHSYSDKHGLRKHLKYTHDRVGGRMICPHCNKRYVLVTQLKRHLREEHDANENLYSCGACDKSFSTKKALDNHHRGYHLQEKNFKCDLCDYQCYQKQLLQNHMSKHSDERKYRCRYCTKTFKRWNERLRHERIHTGHKPYECTACGKTFAQKASLNYHMSTHTAQSDICLWSSRAKERRSRLNHVTEQAKQRCNLTTLLKYSNVTPFKERTALGYHCAYCSKAFPDPEELIAHSRNEHRNERLVYKAGVLVNKYVAFLDITNLKCNICKTGVDDLKSMVDHLTDVHKKTFYKDIPDYIQPFKLSAGKAMACCLCTEVFDNFKTLASHMNEHYRNFVCQICGMGYLNKQRLSRHEATHVNGKFPCQYCHKIYLTDQKKKSHERSIHLGYADSKCQICQQKFTNSYQKAKHMAEEHDADLAKCRICGKTFVTKALLKIHMRRNHFKERSHECDVCKLRKREKTKLDKHRVAWTKKTPEDLAKQQYNLLNILQLSNATPLRSKTGRGFNCAFCADVFQEPADLKIHNIKEHKDLKPKSIMNKKILYGNYVKLDITALQCSLCGVPLDKLPNLIEHLKIGHDRRLYTDVEDRILPFKFDTMDVTRCVVCSAEFVSFNMLQRHMNAHYRNHVCDVCDSGFVNKRLLRHHIKYTHQLGEFRCNFCEKVFGTLSKRNDHEKSVHFGFKRNKCAYCSERFVCYKKRNKHVVEVHNKPPIVYKCHACDKTFDMRYKLSQHTKKDHLMERKYECNVCDMKFFMKKELEKHMVKHSGEKNYSCEVCLKTYARKNTLREHMRIHANDRRFKCDKCSHAFVQKCAWRSHMRTKHDVTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -