Lfer028182.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453268.1:3241835-3244841[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 9.7e-06 0.00085 20.5 3.4 1 23 8 31 8 31 0.95 2 21 2.3e-05 0.002 19.3 2.1 2 23 37 59 36 59 0.95 3 21 8.7e-06 0.00076 20.6 0.3 2 23 68 90 68 90 0.97 4 21 8.8e-06 0.00076 20.6 3.5 2 23 99 121 98 121 0.95 5 21 6.2e-06 0.00054 21.1 0.9 2 23 129 151 129 151 0.97 6 21 5.5e-05 0.0048 18.1 1.0 2 23 160 182 160 182 0.96 7 21 1.9e-05 0.0016 19.6 3.2 1 23 188 211 188 211 0.98 8 21 0.67 58 5.2 0.0 2 20 220 238 219 240 0.92 9 21 0.00067 0.058 14.7 1.1 2 23 257 279 256 279 0.94 10 21 5.4e-06 0.00047 21.3 1.2 1 23 312 335 312 335 0.97 11 21 1.6 1.3e+02 4.1 4.6 2 21 343 362 342 363 0.92 12 21 0.041 3.6 9.0 1.0 3 23 373 394 372 394 0.95 13 21 0.0035 0.3 12.4 6.1 1 23 410 433 410 433 0.97 14 21 0.00019 0.017 16.4 0.5 2 23 440 462 439 462 0.96 15 21 2.2e-05 0.0019 19.4 1.8 2 23 469 491 468 491 0.94 16 21 0.013 1.1 10.6 1.5 1 23 497 520 497 520 0.96 17 21 0.082 7.2 8.1 5.1 2 23 528 550 528 550 0.95 18 21 0.0019 0.17 13.2 0.4 1 23 557 580 557 580 0.94 19 21 0.00095 0.083 14.2 0.8 1 23 587 610 587 610 0.95 20 21 0.072 6.2 8.3 3.9 5 23 627 646 624 647 0.89 21 21 3.6 3.2e+02 2.9 0.3 1 11 696 706 696 710 0.86
Sequence Information
- Coding Sequence
- ATGGCTCAATACCAAGAACATTTCGAATGTGACGTATGCAACAGAGGTTTTACGAGAAAATACAATTTACGTACCCACATCACAAATTGTCACATGAACTCGAACTGCTATTGTGACATATGCGACACGAGTTTCAGCAGCTCCAAAGGCCTCCAGAAGCACCTGAGTCGCGGTCACAACCGTCACTTACAAGGGTATCCGGAATGTGACATATGCGGCAGGATATTTACGAGGAAACAAAATATCATGTCGCATATGCTGACTGTACATTTGCAAGGTTGCGGCCGCAGGATAACGTGCCATTTATGCCAGAAAACTTTTACGACGGAACGCAATCTAAAACGGCATTTAAACCAACTACACAATCCGGATGCTCAATACCCGACTTGTGATGACTGCAACAAAGTTTTCAAAGGGAAACACTCGTTGTTGGCGCATATACAAACTGCGCATGGCTTCGCCGAAAAGGTTGTGGCGAAGTGTGACCTTTGCGAGAAGGAGTACACGAACAGCAGGAGTTTAAAACGTCACATAGAAATGTACCACGGTGAAAGAAACGAGTATAGGTGCCATCTGTGCCCGAAAATATACACATCTAATCAGAGTTTAAGACGGCACACAAAAAGTATACACAATACAGATAATGTTAAACCTTTGAAATGTGAGATGTGTTCCGTTGTTTTCTATGAAGAAAGATCTTATGCGGTGCATATATCGAATTGTAAACAAGAAAATTACAATTGGAATCCGATTTTGGGTTACGATAGTACATGTCAGACATGCGGTGTATGTTTCGATCGAGAACCGAACTTGAGACAACATGTTAAAGACGAGCACCCTTTCAATATCTTCTATGAGTACTGCAGGGACTTTTTATTGAAACAGGAGGCCAAAAACGAGAATCTAAACTCTAAAAGGCAGAACGAGTCTTATTACAATTGCGAATATTGCAGCACCGTCTTCACTAACGTGTATGATTTGAAAGAGCACATGAGATCTAAACACGACATAGATTATTCTCTGTGCTCTTGCAATGTGTGTTTCAATAAGTTTTACTCCAAAGAGGGTTTGAAGGAGcacaaaaaacattgtttacCCCCTCCTGGAGTAAACAATTGTGATTACTGTGAAAAGCTATTCACAGACATGTCAAGTTTAGAATTCCATAAGAGAATATTCCACCCTCAGATACCAGATTCCGATGCAGAGGAATACGATAGAAACAATTATAAATGTGAACATTGTAACAGAGTTTACTTCAGCGATAGGTCTTTGAAACATCATATAAAGTTAAAACACACGACCGACGAAATGGTGGAATGTGGTTTTTGTGggaaaatttgtaataataaatattatctagCAAGCCATATTAAAATAGTCCATACAGAACAAGCGTTGTCTAAATGTGATTACTGTGACAAAGAATTCAAATCGAAGAGGAATATAAGAAGGCATATTGAATATACCCATTTGGGTATGCAACGCTACAAATGCATAGAGTGCGAGACTCTTTTCAAAGAGAAAAGGAGTTTAAGGAAACACGTCCGTATCAAACATCCCAACTCGACGATGTTCCCGCAGTGTCACATATGCAAAAAGCGTTTCGAATCTGCCAAATCTTGTAAAATCCATCTCAAGTTAGTCCATTCGTACAACATGAACACGCATCCTTGCGATTTGTGCAGCGTCTCATTCACATCCGTGGAATCCTTGAAGATCCATCTACAGGAGAACCATTTGGCCGAAGATGAAATCTACAAATGCGAGGAATGTAACCTGGTATTCAAAGGTCAGGAGAACTTTGATACGCACAACGAAACCTATCACATCAATTTGGACCCAAATGTGAAAAAGAAGCTGTTACCGAGGTGTATCATATGCATAAAAGATTTCAGCACCCGAAAAACTTTAAAGCGGCACATAAAGAAATTCCATCATGATTTCGATATAGAAGAACTAGCTAACTATGGTACGAGGCAGGGAAATTTCAACGTGAGCTGTGAAGAATGTCTGAAGAAATTCCACGATGGccaatatacaaatatttatgagaaaatCAAGCATTTGAAAGATTCTGTCGTTTTCAGTTGCGAATACTGTGGTAGTTCTTACAACGTTCTCGAATACACTATACAGAAACATAGGATGTTCAATTTCGATGAAACTAAAGGAAAAATGATACTGAGCGAATTGTGCACTGCCGAAATAAGcggagaagaagaagaaatggaTTATTCTTTCTACCAGGATCGCTTCCACGAAGAACAGAAGTACATCAAGTCGGAACCGATAGACGATATAAAAACTGAACCCATGTCGCCTTAG
- Protein Sequence
- MAQYQEHFECDVCNRGFTRKYNLRTHITNCHMNSNCYCDICDTSFSSSKGLQKHLSRGHNRHLQGYPECDICGRIFTRKQNIMSHMLTVHLQGCGRRITCHLCQKTFTTERNLKRHLNQLHNPDAQYPTCDDCNKVFKGKHSLLAHIQTAHGFAEKVVAKCDLCEKEYTNSRSLKRHIEMYHGERNEYRCHLCPKIYTSNQSLRRHTKSIHNTDNVKPLKCEMCSVVFYEERSYAVHISNCKQENYNWNPILGYDSTCQTCGVCFDREPNLRQHVKDEHPFNIFYEYCRDFLLKQEAKNENLNSKRQNESYYNCEYCSTVFTNVYDLKEHMRSKHDIDYSLCSCNVCFNKFYSKEGLKEHKKHCLPPPGVNNCDYCEKLFTDMSSLEFHKRIFHPQIPDSDAEEYDRNNYKCEHCNRVYFSDRSLKHHIKLKHTTDEMVECGFCGKICNNKYYLASHIKIVHTEQALSKCDYCDKEFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRIKHPNSTMFPQCHICKKRFESAKSCKIHLKLVHSYNMNTHPCDLCSVSFTSVESLKIHLQENHLAEDEIYKCEECNLVFKGQENFDTHNETYHINLDPNVKKKLLPRCIICIKDFSTRKTLKRHIKKFHHDFDIEELANYGTRQGNFNVSCEECLKKFHDGQYTNIYEKIKHLKDSVVFSCEYCGSSYNVLEYTIQKHRMFNFDETKGKMILSELCTAEISGEEEEMDYSFYQDRFHEEQKYIKSEPIDDIKTEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -