Lfer012048.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453250.1:8843510-8869450[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.8e-05 0.0033 18.6 2.9 1 23 205 227 205 227 0.98 2 20 0.00016 0.014 16.7 0.7 1 20 233 252 233 255 0.94 3 20 2.6e-05 0.0022 19.1 4.6 1 23 270 292 270 292 0.98 4 20 0.00016 0.014 16.6 4.7 1 23 298 320 298 320 0.99 5 20 3.2e-05 0.0028 18.8 5.3 1 23 326 348 326 348 0.97 6 20 1.1e-05 0.001 20.2 9.4 1 23 354 376 354 376 0.97 7 20 6.5e-07 5.6e-05 24.2 2.9 1 23 382 404 382 404 0.97 8 20 8.8e-05 0.0077 17.4 6.7 1 23 410 432 410 432 0.97 9 20 8.8e-05 0.0076 17.5 6.5 1 23 438 460 438 460 0.97 10 20 4.2e-07 3.7e-05 24.7 1.9 1 23 466 488 466 488 0.98 11 20 2.6e-06 0.00023 22.3 7.8 1 23 494 516 494 516 0.98 12 20 3e-06 0.00026 22.1 7.6 1 23 522 544 522 544 0.98 13 20 4.6e-07 4e-05 24.6 6.5 1 23 550 572 550 572 0.98 14 20 1.9e-05 0.0016 19.6 5.1 1 23 578 600 578 600 0.96 15 20 5.5e-05 0.0047 18.1 5.2 1 23 606 628 606 628 0.97 16 20 5.2e-07 4.5e-05 24.5 5.8 1 23 634 656 634 656 0.98 17 20 4.9e-05 0.0043 18.2 7.8 1 23 662 684 662 684 0.97 18 20 2.9e-06 0.00025 22.1 5.2 1 23 690 712 690 712 0.98 19 20 0.00063 0.055 14.8 0.3 1 23 719 741 719 741 0.96 20 20 1.1 95 4.6 4.2 1 23 751 773 751 773 0.98
Sequence Information
- Coding Sequence
- ATGCCCATTTCTACAAACGCAAAATGCTGTTCTAGCTTCTATGAAGGACAAAATAGTCAAGTGACTATTTTAACTGATCCTGTCTTCCAAGGTTTGACAAAATGTTTCTCGGTATTACCATTTACTGAACAGTATATTTGTATGCAGGTTATAGACAGCGTGGTACGTATAGAGCAAGCAACCGGTGAACCTGCCAACATCCTCGTTACCCACAACCCCGATGGTACCACATCGATAGAAGCCAGCGCTGCCGATCCGCTCATAGTGAAGGATGAAAAAAATGTTGCCAAAATTGAAACGGCTCAGTTCGCAATACCTGCAGACATCAAGGATATTAAGACCGCTATAGACCTTAAGAACGTGAGCGGTATGGGCATGGAAGGAGCGGTCGTGAAGATATCGGCGGGTGCATCCGAACACGATATGCATGCTATGTACAAAGTAAACGTAGAAGACTTATCGCAGTTGCTTGCTTACCACGAAGTCTTTGGCAAGCTCAACTCGGAAGGTCAACAGCAGACCAAGCAAGTGATAGGCGATGTGGAAGTCGAACCGGGCACCAGCGGCGCAATGACTCAATCGGAGTCGCCGCCCGGAGCCGTCGGCGGCCACCACACTTGTGACATCTGCGGAAAGATGTTCCAGTTCCGCTACCAGCTAATTGTGCACAGACGCTACCATGGTGAGCGCAAGCCGTTCACATGCCAAGTGTGTGGACAGGCTTTCGCTAACCCCGTTGAGCTCACACGTCATGGGAAATGCCATCTTGGTGACCGACAAGCGAAACGGATGACCCAGGATAAGCCGTACGCGTGCACAACTTGCCACAAGACATTCGCGCGGAAGGAGCATCTCGACAACCATGTACGCAGCCACACGGGCGAGACACCTTACAGATGTCAGTTCTGTGCGAAGACGTTCACGCGCAAAGAGCACATGGTCAACCATGTCAGAAAGCACACGGGTGAGACTCCGCATCGCTGTGACATATGTAAGAAGAGTTTCACAAGGAAGGAGCATTTCATGAACCATGTGATGTGGCATACTGGTGAAACGCCGCACCACTGTCACATATGCGGCAAGAAGTATACTAGGAAGGAACATTTAGCGAACCATATGCGCTCCCATACAAACGATACACCGTTCAGATGTGACTTGTGCGGCAAGTCCTTTACGAGGAAGGAGCACTTCACCAACCACATTTTGTGGCACACTGGCGAGACGCCTCACCGCTGCGACTTTTGTTCGAAAACCTTCACACGGAAGGAGCATTTACTCAACCATGTTCGTCAACATACTGGGGAATCACCTCATCGTTGCAATTTCTGCAGCAAGTCTTTTACGCGCCGTGAACATTTGGTCAATCACGTTAGGCAGCACACTGGTGAGACGCCGTTCCAGTGCGGTTACTGCCCGAAAGCCTTCACCAGGAAAGATCATCTTGtaaacCATGTTCGGCAGCACACCGGTGAATCCCCCCACAAGTGTTCATACTGTACCAAGTCGTTCACTCGCAAAGAACATTTGACAAACCACATTCGCCAACACACCGGGGAATCCCCGCATCGCTGTACCTATTGCAGCAAATCCTTCACCAGGAAAGAACATCTTACCAATCATATACGGCAGCATACGGGGGAAACACCGCACAAGTGCACGTACTGCCCGAAGTCGTTCTCGCGCAAGGAGCACCTCACGAACCACATACGGCAGCACACTGGGGACACGCCACACGCCTGCACCTACTGCAGTAAGACATTCTCTAGGAAGGAGCATCTTGTCAATCATGTGCGGCAACACACGGGCGAGACGCCGTTCAAGTGCACGTACTGCGCGAAGGCGTTTTCCCGCAAGGAGCATCTGACCAACCACGTTCATCTGCACACGGGGGAGACGCCTCACAAGTGTCCGTACTGCACCAAGACATTTTCCAGGAAGGAGCATCTCACCAACCATGTCAGAATACACACGGGCGAGTCGCCGCACCGTTGCGAGTTCTGCCAGAAAACGTTCACGAGGAAGGAACATCTGACGAATCATCTCAAACAACACACCGGCGATACCTCGCACACCTGCAAAGTCTGTTCTAAACCGTTCACCAGAAAGGAACATCTTGTCACACATATGAGGTCGCATAGTTGCGGCGAGAGGCCTTTTAGCTGCGGTGAGTGCGGCAAGTCGTTCCCTTTGAAGGGCAACCTGCTGTTCCACGAGCGCTCGCATAACAAGGGCGCCGGTGCCCCACGACCATTCCGATGCGACATTTGTGCCAAGGACTTCCTCTGTAAAGGTCATCTCATAACCCACCGACGTTCGCACGGCGAGGCCGCCGCCACAGAGGGCGTGGCACCCGCTCCGGCCAGCGATGGCGCTCCGGTCGACGCGACTCGGGATACCGCTGACATGGAGATTGACGACAAATGTAAGGTGGTGCCTTGCGACGTGCAGCCTCTTAGACACGATAGGAAACCTCTCGAAACAGCGCCAAGTGAACGAGGTGCTAGCGAAACAAACGTTGCACAAAATCCACAAGCCAATGCAACGGTGATGCAGATTACAAGTCAAGTGCGTGCCGGCGGATCAGGCGGCGCAGTCAGCGGTTCGTTCCCACGTCCTGGCGCCGGCCAGCACCACACGGGGGCGCCCATCGCACACCACCCTGTCACCGTCAACTACTAG
- Protein Sequence
- MPISTNAKCCSSFYEGQNSQVTILTDPVFQGLTKCFSVLPFTEQYICMQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPLIVKDEKNVAKIETAQFAIPADIKDIKTAIDLKNVSGMGMEGAVVKISAGASEHDMHAMYKVNVEDLSQLLAYHEVFGKLNSEGQQQTKQVIGDVEVEPGTSGAMTQSESPPGAVGGHHTCDICGKMFQFRYQLIVHRRYHGERKPFTCQVCGQAFANPVELTRHGKCHLGDRQAKRMTQDKPYACTTCHKTFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCHICGKKYTRKEHLANHMRSHTNDTPFRCDLCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHIRQHTGESPHRCTYCSKSFTRKEHLTNHIRQHTGETPHKCTYCPKSFSRKEHLTNHIRQHTGDTPHACTYCSKTFSRKEHLVNHVRQHTGETPFKCTYCAKAFSRKEHLTNHVHLHTGETPHKCPYCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLKQHTGDTSHTCKVCSKPFTRKEHLVTHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKGAGAPRPFRCDICAKDFLCKGHLITHRRSHGEAAATEGVAPAPASDGAPVDATRDTADMEIDDKCKVVPCDVQPLRHDRKPLETAPSERGASETNVAQNPQANATVMQITSQVRAGGSGGAVSGSFPRPGAGQHHTGAPIAHHPVTVNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -