Lfer017204.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453255.1:14880927-14885056[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-07 0.00018 22.0 0.1 4 41 29 67 26 69 0.92
Sequence Information
- Coding Sequence
- ATGGGAAAACCAAAaccaagaataaaaaaaagaaaaagcagAAGAAAATTGGGTGCTCGTCCATACAGAAACTATTCAGCTGAAATGCTTGAAATAGCAGTTGAATTAGtagcaaagaaaaaaatatcatcaagAGAAGCGGAGAAACAGTTTGGTATTCCGCGACGTACTATACTTAATAAAGTAGCTAAACGACATATGCGTGCCGTCGGGGCACCAATAAGATTAACTAATGAAGAGGAACAAAATCTTGTTAGCGTAATTGTAGCCGCTGGAGACTTTGGAAGCCCCCTGACAAAATTAGATGTCCGTATACtcgtttttaattacttaaaaaaaaatggacgtgaagatattttcaataataaattgcCAGGGGAAATGTGGATtcgaaactttttatttcgTAATGCAGAAAGCTTGACAATTAGAGCTACCCAGAATATTAGTTCGGCGAGAGCAAAGAAAGGAGAAGATGAGATTGTTCATTACTTTACCAACCttaaagaaactttaaaaaatattccttctAGCAACATCATGAACTATGATGAAACAAATTGTAGTGACAACCCAGGGTCTACAAAAGCCATATTTAGGCGTGGAGTAAAGTACcccgaaagaattattaacaGTACCAAAGGATGCATATCAATTATGTTTAGCGGCACTGCGGATGGGAAATTTTTACCTCCTTACATTGTCTACAGAGCTGAAAATATGTACGATGCGTGGGTACTTGGTGGCCCTGATGGTGCGAGGTACAACTGCACAAAAAGCGGTTGGTTCGACTCCGCCGTTTTCGAGGACTTTTTCAGAACTGTTGTAGTAGAATGGGCTAAGAAGTTGGTAGGGCCAAAAGTAGTTATTGGTGACAATTTGTCGAGTCACCTTAACCCCGAAATAGTTAATCTTTGTGAAAAGCATGATATACGTTTTGTGTTTTTGCCTCCCAATTCCACCCATATTACGCAGCCACTCGATATCGCCTTTTTTGGCCCCTTAAAAAGGGAATggcgaaaaattatttttgaatataagaTTCAAAACCCTGATCaaaaaacactaaataaaaaacattttccgaATTTGTTGGTGAAGCTTATAGAAGACACCCAAATCAGACAAAGCAGTAATATAAAGAGCGGCTTTAGGGCAGCGGGCATTTGCCCGCTGGACCCTCGACAAGTCTTAAAAAGAATACCTGAATATGACGCAGATCCATCAAATTATAGAATCGACGAATCTCTTTTAGAATACCTAAAGCAAACCAGGGCGCCGAACCCAATGGTTAAAAAGAGAAGTAAGAAAATTAACACTGAACCCGGAAAATCAGTCTCCACAGCAGATATAAACATATTAGTTAAAGAAAAACGTGGCATATCAAAGTCATTAACTTGTAAACCAGAGATACGAAAGCAACAAAAGTACAAGaacaaaattgaagaaaatactGATAACATTACAGAAGAGGTGTTAGACGAAAGGACAGGAATTATAAGAACTGAAGTGTGTGTTCACGCGGCCAAAAATCGTAGCCAAACCAAAGATACAGAAATAAGACCAAATAATCGCATTTATGACAACGTTTGCGAATTCGATAAAGAAAATACCTCGCACAATATTCAGGCTAATAACGAAAACacaggaaaaataaaaattttatcaaacgTTTGTATCAATCCCGGTGTATCTAAAATTAatgaaagttacaaaaaaactgAATTTCACAAACGCAAGGCGGTTTTAGAATATGACGTTGATAAACATGAATGTACAAATGAAATTGAGTATATCCATCATTATGGTATAGATTTGGAAAAACAAGAAAACATggaagaatatgaaaatatgCATGTACAAACCATAAAAAAACAAGAATGCACGGAAgatcaaaaatatatagaagATCCTTTGTTCCATCCGGAGGATGAAGAAACCACACGTCTTGAAGTTGAGTTTTTGGATCCTTTTGATATGAAAGAACAAGAAAATCCGGAGGACCAAGAAAACACGAATTATCAAGAAAGCATGGAAGAACAAGAAACTAGTTTTAGAGTTAGGGAGTACTGTATTAATAAGaagaacattaaaaagaaaGCGGAAGATAGTGAAACTGATACATCGGGAGAATTTTCTCTAAAAGATTCATCTGATGAGGAAGATTTCGagttagaagaagaagaacacgaAAAAGAAGAATACAAAAGCGATTCCGAgaactattcaatttttaatgcTTTGGAGGTAATCTCGTTCACGGATTTGCAGAAGGATCAATTTATTCTAGTAAAATTTGAGGTTCAAAAATCATTTAGATATTATGTTGgaaACATGCGCGTGATTCAAGATTCACAGTTCACAGAATCATCGATAATAGACACAGAACAGAACGGCGGGCGCGCGCGGAAACACGAGGAGTCACTCCGTGTTGCCAGCTTTTTGTGGCGTAGACATGCTCCGGGGGCCGGCTTCAGTGGGCAGCTGTGGACACAGGCGTGTGAGAACGCGGCGGATGCAGCTTGA
- Protein Sequence
- MGKPKPRIKKRKSRRKLGARPYRNYSAEMLEIAVELVAKKKISSREAEKQFGIPRRTILNKVAKRHMRAVGAPIRLTNEEEQNLVSVIVAAGDFGSPLTKLDVRILVFNYLKKNGREDIFNNKLPGEMWIRNFLFRNAESLTIRATQNISSARAKKGEDEIVHYFTNLKETLKNIPSSNIMNYDETNCSDNPGSTKAIFRRGVKYPERIINSTKGCISIMFSGTADGKFLPPYIVYRAENMYDAWVLGGPDGARYNCTKSGWFDSAVFEDFFRTVVVEWAKKLVGPKVVIGDNLSSHLNPEIVNLCEKHDIRFVFLPPNSTHITQPLDIAFFGPLKREWRKIIFEYKIQNPDQKTLNKKHFPNLLVKLIEDTQIRQSSNIKSGFRAAGICPLDPRQVLKRIPEYDADPSNYRIDESLLEYLKQTRAPNPMVKKRSKKINTEPGKSVSTADINILVKEKRGISKSLTCKPEIRKQQKYKNKIEENTDNITEEVLDERTGIIRTEVCVHAAKNRSQTKDTEIRPNNRIYDNVCEFDKENTSHNIQANNENTGKIKILSNVCINPGVSKINESYKKTEFHKRKAVLEYDVDKHECTNEIEYIHHYGIDLEKQENMEEYENMHVQTIKKQECTEDQKYIEDPLFHPEDEETTRLEVEFLDPFDMKEQENPEDQENTNYQESMEEQETSFRVREYCINKKNIKKKAEDSETDTSGEFSLKDSSDEEDFELEEEEHEKEEYKSDSENYSIFNALEVISFTDLQKDQFILVKFEVQKSFRYYVGNMRVIQDSQFTESSIIDTEQNGGRARKHEESLRVASFLWRRHAPGAGFSGQLWTQACENAADAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00923628;
- 90% Identity
- iTF_00923629;
- 80% Identity
- -