Lfer017574.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453256.1:239098-239754[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-07 0.00011 22.6 0.0 3 39 16 53 14 57 0.81 2 2 3.7 1.1e+03 0.3 0.0 16 24 107 115 100 116 0.79
Sequence Information
- Coding Sequence
- ATGGCACTTGATCagtgtaaaagaaaaaacaggAAGTACAATGAAGCAATATTGAAAACTGCAATAGTAAATGTACTGGACTCAAAAATGACTTTATACAGAGCTTCCAAAGAATACGGCATTCCTTGGACCACTTTAAAAGACAATCTTCAACGAGTAAAAACCCAACGGGATATAACAGGAACAACACAATTTACTATGTCAAAAATTGGAAGACCATTTTCGTTGTCTGTAGATATAGAACAACAATTATTTGCATATATAATTGAAATGCAAGAAATTGGTTTTGGCCTCACCGTCAACAAAATCAGACAAATTGCGCTATCATTGGCTAAAGCGGCTGATTTAAAACACTCTTTTAACGAAACAAAGGGGTGTGCTGGATGGAACTGGTGGATTGGTTATAAAAATCGTTATGGTTTGACTTTGCGATCACCTGAAAATCTTTCTGCAGGGCGTGCTATTCGTTCGAATCGGGCTTTATTTGacgaattttataaaaaattggaaaaaactTTAGTTGACCATCGTTTGATGAACTCTCCTGAGAAAATTTGGAATTGCGACGAAACAGGGCTAATGTTcgtaaacaaatcaaataaaatcgtgACAAAAgtagggaaaaaaaatatatataatcgtACCTACTTACACTGA
- Protein Sequence
- MALDQCKRKNRKYNEAILKTAIVNVLDSKMTLYRASKEYGIPWTTLKDNLQRVKTQRDITGTTQFTMSKIGRPFSLSVDIEQQLFAYIIEMQEIGFGLTVNKIRQIALSLAKAADLKHSFNETKGCAGWNWWIGYKNRYGLTLRSPENLSAGRAIRSNRALFDEFYKKLEKTLVDHRLMNSPEKIWNCDETGLMFVNKSNKIVTKVGKKNIYNRTYLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -