Lfer024550.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Luffia ferchaultella
Gene Symbol
Taf1b
Assembly
GCA_949709985.1
Location
OX453263.1:2941075-2962335[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.4e-08 9.7e-06 26.0 0.0 2 40 16 53 15 55 0.90

Sequence Information

Coding Sequence
ATGGTGCggaatagaaaaagaaaaaccgATATAGGATTACACAGCGAAAATGACATGAGAGCAGCTATACAGTTGGTAGAGGAAGGTATGAGTTTGAGAAAAGCAGGACAAATTAAGAATGTCAATTACTCCACACTGTGTAGatatgttaaaaagaaaaaatcatgCGATGGAGAACAAGCTGAAAATATGCGTCTGACGCCCAATTATTCGGTGCGTAAAGTTTTTCAACCAAATCAAGAAGCTAggttaaaagaatatttaataacttgTGCAAAAATGTCATATGGGTTAGACACTATAGAGACAAGAAAACTTGCTTATGAGTTAGCAAAATACAATAGCTTGGCCATTCCTGAATCATGGGAAACCCACAAAATGGCGGGATTGGATTGGTTATACGGTTTTCGGAAACGTCATCTTGACTTGACATTAAGAAAGCCCGAGCCGTGTAGCCTTTCTCGGGCCACATCTTTCAATAGGCATAATGTTGGActcttttttgataatttagatAACGTGATGAAAAGGAATCCCAGCTTTGCTGACGGTACAAGACTGTATGCGTTAGATGAAACAGGCACAACTACAGTGCAAAAACCTAAGAAAGTTATTGCGGCCAAGGGATCCAAGCAATTGAACAAAGTTACCAGCGGTGAACGGGGGACACTTGTCACCACATGTTGCATTGTGTCAGCATCTGGATCCGTTTTGCCACCTGCAATGgtgtttcctagaaaaaaatttaaacactttaTGCTTAATAAAGCTCCACCTGGAACACTGGGGTTGGCACAGCCTACAGGTTGGATGAACAACCAACTGTTTCCTGAAGTAATGAGACATTTCGTACGTGTAACCGGTGCTTCAAAAGACAATCCTTGTCTTTTAATCTACGATAATCATGAAAGTCATTTAGCACTAGAAGCTTTAAATGTTGCTAAAGATAATGGAGTCACACTGCTCACCATTCCACCCCACACTAGCCATAAACTCCAACCTTTGGATGTTTCAGTATTTGGCCCGCTGCAAACATATTACAGTGCAGCTGCAGATTCATGGATGATGCGGAATCCTGGGATTCCAATTTCAATTTACGATATAGGGGAAATATTAGGACTAGCTTTTGAGAAAGCTATGACACCTGCAAATATTAAATCGGGTTTCTTAAAAACAGGAATTTTCCCGTAcgacagaaatatattttctgatGATGATTACATGCCAAGTGAGGTGACCAATCGTCCTATTCAAGTAGAACCTTCAACAAGTGAAACGATTCAAGCAgataaattactagaaaatacAACCGTTGGAATGAATAATGACAGACCGATTACAAATACTAATCCATTATCGAACGCAAAATCTCGCCGGGTCAATTCTGAGAGACAAGAAGAAACAAGGACGATGgaccaaaatatattaaaaagtcCAATTGAGTGCCGTGATTATCCAAAGGCTAAGCCTAGAGTTGGTTCAACAAGAGGTAGAAAAAGAGGGAAGACAATTATTGCGACAGATACTCCAGTCAAACAAGAAATCGAGCAACAAGCTAAATTaaaggaaagaaagaaaaataaagttaaagctAAAGTTGTCAAGGAAACCCAAGAAAAGATGGAAAAAGTGTCGAAAATGCTTTTTGTAGATTCTAGTGAAGATTCTGATGCTACAAACTGTTCTACAGCTTCTTCAACTACTTCCACCGATATACCTTTATCTAGTTATAGCACTCCCAAAAGAAACGATTTTGTTGTTGTTAGTGTTGAGCTGTCTGATGAAAATGTAGAATGTGAAAATGATGCAGAGCTTGACAATGAAGATGATACCGTTAGGGAAAAAGAAGATTATAAACCAGGAACGTATACACATAATACAGATATCAACACAGTAACAATTTCTTTGCTTCATGCCATGTGTTATATAGCTTTGAATTTAGATAAAAGTGAAATACAATTGTCAGATTTGTGTAGATTTATCAGAGAAGAAAAAGTAAGCCGTAGAAATTGTATGAGGTTTATTCCTAAAGAATTAAAGGTAAATTCAATTCCTAAATGGCACAGTTTTATAAGATCGACTGACCGTATGTGTACATACATAAGTTTAAAATCCATAACGTTAATGATATTCAAGAAACTAGATTTAGGATCACCATGTATACctgatttctataaaataattaataaatttgttttggaATTATGCCTACCTAATGATTTCACAAAAATTGTGTTAAGTTTAGCAGAATATGTTCGATTCAACTTTGATGATTCCAAAACTAAAGTTGTTGCCATACACGATTATGAAACATTGGCAATGGCATATATAGTGATGGCtatgaaaatttgttttggatTAGATGATGATTATGAAATTAAACTGTCTGAAACTGTGGATAAAATCAACACTGAAGAATGTCGTTTCAAATCCTATAAAGGAATGTTCTATGATTATAGTCAAAGACTATTTTGTTTCCGAGAGTGGTGTAATTACATGGAACTAAGAAAACTGATGTTGTCCAAGTATAATTTCCACATGGCTATTCACAACAATCAAGAAATAGACGATGAAGTGTTCATATATCAAACAAAAGACAGAGTTAAACAAAATACTGCTGTAAACGTCAGTGATAATGTGATAATCTCATTGCTGGAAAAAATCGAATCTGATACTAATTATGTCAAATTAACAGAAATAGATTTCAAAGGGTCTCTGACACCACTCACGAGTTACACAGACACCTTGATATCTCACTGTGAAGATCCGGAATTAAAGTTAGCACTAAGTGAAGATTTTTCCTCGTATTCTCTTGACTATTTTTTAGAAGACATGTCATTAAAAGTTGATgaTGATAATGATGCTAAATTTGATTTAGATATTTCCTTTAAAAACCCCGATTCGTCAAATGAATCCCTTAAACCAGAAACTAAATGTGAAGCATTAGATGAAGAAATTGATTTGAGTATATTTGATGACACATTTGAAGAtgttaaaactgaaaataatatgaAGCAAGTCAATGAAGAACATCACGAAGATGAGAATTTGAATTCCCAAATCGACAGGGCATTGGAAGAAAAAGATCGAAACGGATTTACAAATGATGATGAATCTGACGTAGAAACAGGAAGTCCTATACCGAGACCGCAATTCGATCCAAACTCATTTGACAGAAATGAGATTATAAAGTCATTAATCGAAATGAAATGTGaagaatataaaataccttTACCTAATGACATGAAACCAAAAGtttcaagaaaaagaaaactgaaTACACCAAATGAAGCTTCAAAATCGAAACTACCCAAAACtagaacaaaacaaacaaatgacAAGAAACCATTACATGATATCGTCACATCATATCTTACGAAGTTAGAAAACGATTTCACTACAACCGTGGTGGGAACATTGGAGAATGCCATAAGAAATTCTTTACAACATAGTACATTACTAAATTCAGAAAGTCATAATTTTGATGCACCACTTGAGGGTGCGGCACTTTCAAAGTTTATTAACATAAGTGATAGAATATTCAACAATAACTCTGATGACGAAAATAAGGACGGTAAAAGTGTTGTCGAGGTTGACAATGAAACAGTATCTGATAATCAGGAATCAGAATCACTGCAACCAAAGTCCAATCCTGAATTTGatgaaaatgtttatgataTAAACCAAttatatgttaaattaaaagaaagacAAAACGAAGAAGTGTTTATGGAAACAGATTCTCACCTAGATGATATCGTTATGAAAAACATAGAGAATATTAAACACAGAAATAAATTTTGGTCGGTGGAGGAAGTTCCCGACATAAAacatatgtcgcaggatgagcAGCAATGCGAAGCGATTTATAGTGAGACTACGTCACGCGCCGACGACGGTCGCTACTCAATGGCGCTGCCGTTCAAAAGAGAATCGAGCGAATTAGGCGACTCATTACTCACGGCTAAGCGTCGATTCATGCAGTTAGAAAAAAGGTTAAATTCCTCACCGACGTTTCGTAAACAATATGATGACGTAGTTAGTGACTACATTGCTAAGGGCTACTTGAAACAAGTGAGTGAAGTAGATTATAAACGGGACTTAGGTTATGTAATACCGCATCACGCCGTGGTACGTCAAGATAAGATGACTACGAAATTACGAATAGTCCTGGACGCTAGTCAGAAAACTACTTCCggtttttcattgaatgatttatTACATTGCGGCCCCAATCTACAGGCTgatcttttttcaattttactaaatattcgATTACAACCAACAGCGATCTGTGCAGATATTAAACAAATGTACCTACAGATTGAAACGCATCCCGCACACCGCAAATTTCAACGCGTTTATAAATCACGTTGTCATATAGAAGACGTTATCGCATTTTCAGACTCTATGGTTGCTCTACATTGGATTCATTCCTCACCACATCGCTGGCACACGTTGGTAGCCAACCGCGTCgcaaaaatacatgaaaatatttctcCCGACAAATTTTATTACGTCAGTAGTGCTGAAAATCCTAGCGATTGCTTATCTCGTGGATTGACTCCAGCCCAACTCGTATCACATCCTCTGTGGCTGATTGGTCCCTCATGGGCCTCTCGGGACAGATCTGTTTGGCCGCTCAAATCCTTTTCAGATGGCGAGACGAATGACGTCATTCCTGAAAGTAAGATGCTATCTTTCCACATAGCTGAAGTGGAATCAGAAGAATCCCCACTCTTATACGATCTCGCATGTCGTGTATCTTCGTGGTCTAAATTATTGCGTATTGTGGTATACATCCTTCGCTTCACACGCAAGTTGTCACGTGACACTCGTATAAGTGTTAAACATTTGGAAGCGGCGGAGCGGACTATTCTCGTCAATTTACAACGCGTCTATTTTAATAAGGAGCTTTCTCTTCTTGCTGAAAAGAAGAGATTGGCCCCTGCTTTAAACAAACTTACGCCATTCCTACATGAAAACCTCATCCGTGTCGGTGGACGATTGGCGAATTCCGATCTAGGGTTCAATGGTCTATTAATGTCTTTACTACGGCAGAAATTTTGGATACTGTCTGCACGTAATATTGTCAGACAGCGTGTGCAACGTTGTAACACATGTTTTCGACGGAATCCAAGGGCTCCGGAACCGATTATGGCGGATCTGCCCGCATGTAGAGTTCGCGAAGCCAAACCGTTTTTACACACAGGAGTGGACTATGCGGGCCCACTCTACATTTTATTGAGACGTGCTAGAGGCGCTCATAAACAGAAAGcgtatatctgtctattcgtATGTCTGGTCACACGTGCGGTTCATATTGAATTAGCTTTGGATTTATCGACGGAAACTTTTATAAATGCATTCAAAAGATTTATTTCACGTCGTGGTCCCTGTAGCGTGTTGTATTCGGATCAGGGTACTAATTTCATTGGCGCAAAGTCTCATTTGAATGAAGTGTACACTCTCATTGGATCCAAAAGCTTTAGTAATGAATTTAGTAATGAATTACTTAATAACCGCGTACAGTGGAAATTAAATCCACCTTCCGCACCGCATTTTGGAGGAATTTGGGAATCAAATGTTAAAAGTGTAAAGAATCATCTTTTTAAAGTAATTGGTACACAGCTTCTGACGTATGAGGAGATGACTACTGTTCTCACACAAATAGAGTCattactgaattcgcgtccgatATCCGTTATGAGTTCGGATCCGGCGGAACCGGAAGCACTGACTCCTGCGCATTTTCTTACGCTAACACCTCTGAAAACATTACATGCGCCAGATGTTTTTTCAATAGAAACAAACCATGTAAAACGCAAATATTTGcttgataaaattattcaaagctACTGGAAGAGGTGGAAAAACGAGGTTCTTCACACCCTTCAGACCCGACAAAAATGGAATACTCCGTCTAATCCGGTACAGGAAGGTATGTTAGTCATTATTAACACAGATAATAGTCCGCCTCTACATTGGCCTTTAGGTGTTGTCGACAAACTGTATCCTGGATCGGACGGTGTGGTGCGAGTAGCGACTGTCAGAACTAAGACAGGTTGCTATAAAAGACTAGTGGTAAAGCTGTGTCCATTGCCATCGCAATGa
Protein Sequence
MVRNRKRKTDIGLHSENDMRAAIQLVEEGMSLRKAGQIKNVNYSTLCRYVKKKKSCDGEQAENMRLTPNYSVRKVFQPNQEARLKEYLITCAKMSYGLDTIETRKLAYELAKYNSLAIPESWETHKMAGLDWLYGFRKRHLDLTLRKPEPCSLSRATSFNRHNVGLFFDNLDNVMKRNPSFADGTRLYALDETGTTTVQKPKKVIAAKGSKQLNKVTSGERGTLVTTCCIVSASGSVLPPAMVFPRKKFKHFMLNKAPPGTLGLAQPTGWMNNQLFPEVMRHFVRVTGASKDNPCLLIYDNHESHLALEALNVAKDNGVTLLTIPPHTSHKLQPLDVSVFGPLQTYYSAAADSWMMRNPGIPISIYDIGEILGLAFEKAMTPANIKSGFLKTGIFPYDRNIFSDDDYMPSEVTNRPIQVEPSTSETIQADKLLENTTVGMNNDRPITNTNPLSNAKSRRVNSERQEETRTMDQNILKSPIECRDYPKAKPRVGSTRGRKRGKTIIATDTPVKQEIEQQAKLKERKKNKVKAKVVKETQEKMEKVSKMLFVDSSEDSDATNCSTASSTTSTDIPLSSYSTPKRNDFVVVSVELSDENVECENDAELDNEDDTVREKEDYKPGTYTHNTDINTVTISLLHAMCYIALNLDKSEIQLSDLCRFIREEKVSRRNCMRFIPKELKVNSIPKWHSFIRSTDRMCTYISLKSITLMIFKKLDLGSPCIPDFYKIINKFVLELCLPNDFTKIVLSLAEYVRFNFDDSKTKVVAIHDYETLAMAYIVMAMKICFGLDDDYEIKLSETVDKINTEECRFKSYKGMFYDYSQRLFCFREWCNYMELRKLMLSKYNFHMAIHNNQEIDDEVFIYQTKDRVKQNTAVNVSDNVIISLLEKIESDTNYVKLTEIDFKGSLTPLTSYTDTLISHCEDPELKLALSEDFSSYSLDYFLEDMSLKVDDDNDAKFDLDISFKNPDSSNESLKPETKCEALDEEIDLSIFDDTFEDVKTENNMKQVNEEHHEDENLNSQIDRALEEKDRNGFTNDDESDVETGSPIPRPQFDPNSFDRNEIIKSLIEMKCEEYKIPLPNDMKPKVSRKRKLNTPNEASKSKLPKTRTKQTNDKKPLHDIVTSYLTKLENDFTTTVVGTLENAIRNSLQHSTLLNSESHNFDAPLEGAALSKFINISDRIFNNNSDDENKDGKSVVEVDNETVSDNQESESLQPKSNPEFDENVYDINQLYVKLKERQNEEVFMETDSHLDDIVMKNIENIKHRNKFWSVEEVPDIKHMSQDEQQCEAIYSETTSRADDGRYSMALPFKRESSELGDSLLTAKRRFMQLEKRLNSSPTFRKQYDDVVSDYIAKGYLKQVSEVDYKRDLGYVIPHHAVVRQDKMTTKLRIVLDASQKTTSGFSLNDLLHCGPNLQADLFSILLNIRLQPTAICADIKQMYLQIETHPAHRKFQRVYKSRCHIEDVIAFSDSMVALHWIHSSPHRWHTLVANRVAKIHENISPDKFYYVSSAENPSDCLSRGLTPAQLVSHPLWLIGPSWASRDRSVWPLKSFSDGETNDVIPESKMLSFHIAEVESEESPLLYDLACRVSSWSKLLRIVVYILRFTRKLSRDTRISVKHLEAAERTILVNLQRVYFNKELSLLAEKKRLAPALNKLTPFLHENLIRVGGRLANSDLGFNGLLMSLLRQKFWILSARNIVRQRVQRCNTCFRRNPRAPEPIMADLPACRVREAKPFLHTGVDYAGPLYILLRRARGAHKQKAYICLFVCLVTRAVHIELALDLSTETFINAFKRFISRRGPCSVLYSDQGTNFIGAKSHLNEVYTLIGSKSFSNEFSNELLNNRVQWKLNPPSAPHFGGIWESNVKSVKNHLFKVIGTQLLTYEEMTTVLTQIESLLNSRPISVMSSDPAEPEALTPAHFLTLTPLKTLHAPDVFSIETNHVKRKYLLDKIIQSYWKRWKNEVLHTLQTRQKWNTPSNPVQEGMLVIINTDNSPPLHWPLGVVDKLYPGSDGVVRVATVRTKTGCYKRLVVKLCPLPSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-