Lfer026081.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453265.1:5720812-5721674[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-10 1.2e-07 32.1 0.1 2 38 43 79 42 83 0.92 2 2 7.2 2.1e+03 -0.7 0.7 5 24 144 163 143 164 0.80
Sequence Information
- Coding Sequence
- ATGACAGTTGTGACGCCGTTCGCCGCCAGTTCGCCtGAAAAAAGTCCGTTGGGGCACTTTGATTCAGTAAGGTGTGGGaaaatggtCCGTAACTATAAACCCAAGActgatagaaaatatattaacgAAGAAAACATCAAAGATGCTATACGTGAAGTACTGTCGAAAACTTTATCTATACGCAAAGCGGCTGATAAATATGGCGTCAAAGCAGCAACCCTACAACATCGTATAGAAAAGTCCAGAAAATCATTCGATGCAACCAGAACATCGTTTCTTAAACATGCAACATCATCTTCATCACAAACAGCATGGGATTCGTCAGAAAAAGCACGGTCTTCATTACAagcatcatcgtcatcatcacaAGCAGCAATGTCTTCAGCACAAGTCACACCATTTTCATCACCAATAGCCCCATCTATGGAGATGGCACAAGCAGCATCATCTACACAACATGCTGAATTATCTATATTACACGCTGCTACTGTAACTTCATCAAACATCTATGGTTCCAAGTATACCGTTACACAAGTTTTTTCAAGAGAACAAGAAACGGTTTATCAATCAAAGATATAA
- Protein Sequence
- MTVVTPFAASSPEKSPLGHFDSVRCGKMVRNYKPKTDRKYINEENIKDAIREVLSKTLSIRKAADKYGVKAATLQHRIEKSRKSFDATRTSFLKHATSSSSQTAWDSSEKARSSLQASSSSSQAAMSSAQVTPFSSPIAPSMEMAQAASSTQHAELSILHAATVTSSNIYGSKYTVTQVFSREQETVYQSKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00923606;
- 90% Identity
- iTF_00923568;
- 80% Identity
- -