Lfer004730.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453243.1:14076114-14078339[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.1e-11 2.3e-08 34.4 0.3 1 37 13 49 13 56 0.91
Sequence Information
- Coding Sequence
- ATGGAATTACTAACTAAAAAACGGCGTGGAGAGTGGACGGAAACGCAGCTAATAGCAGCCATGCAAGCAGTAAGTAGCCGCCATATGTCACAGCGAGCAGCAGCTGCAAGATATGACATACCAAGGCGCACATTAAGAAATCACCTAATATCTGGATCTACAAAAAAGATAACTGGTCGCCTACCAATTCTTACTAAATCACAAGAGAAGGATTTAAGTAAAAGAGTTATTAGGCTTGCTCAAGTAGGTATGCCATTAACTCCCAAAATTGTTCGTAAGCAAGCTTATGAGTTCTGTAAAGCAAATAATATACCGAATTCGtttaacgataaaaaaaatattgctggaAAAAAATGGctgaaaaattttgttaaacgCAATCCAGAAATATCTCTTCGTAGAACTCAAATGCTGAATCCGGCAAGAGCACAAAAGCTTAACAAGCCCATTGTAGCAAAACATTTTGaagccattaaaaaaatatatgatgagTTAAACATTTCTAGTCACCCAGAGCGTTTATATAACATGGATGAAAAGGGATGCAGATTAACCCTCCACCATCAACAAAAAGTCTTTGCCGCTAAAGGGACCAAAAGAGTACATTTTGTGGCTCAAGAACATGCAGAGAATCTCACAATTGCAATATGTGTAAATGCAACTGGAAATACTGTGCCTCCAATGATCTTATTTAAGGGGAAAAGATTGAAACCCGAATTTTGCGACAATTTGCCACCTGGAAGTTTGACAAAGATGGCTCCGAAAGGAAGTATGACGACCGAGCTTTTCGTAGACTTTATACACCATCTGGGTAAGTATAAATCTCAAGGAAAATGTTTGCTAATATTTGATGGGGCTTCATCTCATTTAGATGCAAGAATTGTCGATGCTGCTGATGCCCATGACATTGTGCTATACTGTTTACCATCTAACACCACGCATGAGCTACAACCGCTAGACAAGTCTGTTAATAAATCTTACGAACATTTCTGGGACGAAGAAGTCTTGCTGTATGCATATCAGCGCCCAGAACATAAACTTACGAAAGCGCGTTTTaacacaattttcacgaaagttTGGTCCAAGTGCATGACTAAAGAAAACATAATCAGTGGATTTAGAGCAACCGGCCTCTTTCCGTATAACAATAATGCAATTCCAGAAGAAGCGTACGCGCCCTCGGCACTTACAGAATTGCCCGATCTACGTGATCCGCTTCATAATGTTTTGAGGGTGCATGACACAATTTCTGAAAGGGCATCTAAACGAGCTTCTAATCTGAAAAGTTCTGTTGTATCCCCAAGATATGACAATAATTTTGATACGAATGTAACAGACTGCGAAGAAGATCTCAGAAACGATTCACCATCTATTTTAACTCAGAATGAATTACATGAATTCAGAGAAGATAACGCTgtagaacaaaaaaaactagttgATTATAGTTCCTCTTCCGAATCTTCTAATGTGGACGACTCAGGGAACCAAAAGCAGCTTCAGAGACAACCTCTTCTGGATTTGAATTATAGGAACACTACTTTTTGCTCACCTGTTCCTGCTACATCTGGAGTTAATATGCGGCCTTGCCCACGGCTAAACTCTTCTACATCAGATGGATCCGAAGCAGAAGACTATTATGACAATTGTCTTAAATATTATCAGTATCATCCaaaacttattaatatttacacttCAACTTCCGAGTCAGATGCTCAATCTGAGGATCCTGAAGATGATTTAccattatcaaaattaaaaaaagataatggGAATGCAACTTATAAGTCACCATTCCACAAACAAATTCCAACACCAAATTTTGCCATCATCAAAGATAAACCAAGACGAAAAGCGTTAAATTATATAGGCCAGAAATTAACCAAAGATTTATTCGATGCTGTCAAAGATAAGAAgaacaataaagaaaaaactaaaaagccaAGTTACATGAATACAAGTAAACattctaaacaaaataaaaaagtaggaAAAGAAGTTCAAAGATTATCGAAACAAAAACAAcacacaaaaactaaaaaactgaacaaaAGAAGTAACAAGGACTCTAAAACATCTAGAAAAGACGGTTGGTATTGTCACGGATGCGAGATGGATAGAATCGCTGACATGCGACAATGCAAAGAGTGTCAGAAATGGTATCACGAAGAATGTGTCGGTTTAACTACAAAAGACAAGGAACAATTCGTATGTCCCGATTGTAACTAA
- Protein Sequence
- MELLTKKRRGEWTETQLIAAMQAVSSRHMSQRAAAARYDIPRRTLRNHLISGSTKKITGRLPILTKSQEKDLSKRVIRLAQVGMPLTPKIVRKQAYEFCKANNIPNSFNDKKNIAGKKWLKNFVKRNPEISLRRTQMLNPARAQKLNKPIVAKHFEAIKKIYDELNISSHPERLYNMDEKGCRLTLHHQQKVFAAKGTKRVHFVAQEHAENLTIAICVNATGNTVPPMILFKGKRLKPEFCDNLPPGSLTKMAPKGSMTTELFVDFIHHLGKYKSQGKCLLIFDGASSHLDARIVDAADAHDIVLYCLPSNTTHELQPLDKSVNKSYEHFWDEEVLLYAYQRPEHKLTKARFNTIFTKVWSKCMTKENIISGFRATGLFPYNNNAIPEEAYAPSALTELPDLRDPLHNVLRVHDTISERASKRASNLKSSVVSPRYDNNFDTNVTDCEEDLRNDSPSILTQNELHEFREDNAVEQKKLVDYSSSSESSNVDDSGNQKQLQRQPLLDLNYRNTTFCSPVPATSGVNMRPCPRLNSSTSDGSEAEDYYDNCLKYYQYHPKLINIYTSTSESDAQSEDPEDDLPLSKLKKDNGNATYKSPFHKQIPTPNFAIIKDKPRRKALNYIGQKLTKDLFDAVKDKKNNKEKTKKPSYMNTSKHSKQNKKVGKEVQRLSKQKQHTKTKKLNKRSNKDSKTSRKDGWYCHGCEMDRIADMRQCKECQKWYHEECVGLTTKDKEQFVCPDCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00923553;
- 90% Identity
- iTF_00923553;
- 80% Identity
- -