Lfer004153.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- clz9
- Assembly
- GCA_949709985.1
- Location
- OX453242.1:27036030-27038354[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-11 3.4e-09 37.1 0.0 1 42 25 66 25 68 0.91
Sequence Information
- Coding Sequence
- ATGGTTCGTACCTATATtcgtaaatatacaaatttgAGAAAAGGTAAAAGCTATCAACCTTATACAATTTATAcgaaagaaaatttaaacaaagcCGTTGACGAAGTCAGGCGTAATAAATTATCAATCAGAGATGCTGCAAAGAAATATAATGTGCCCAAAAGCACGATAGGACGTcgaatcaaaaatcaaaacacATTATATGAAAAAGCTGGACATCCCACTCTATTCAGCGCAGCTGAGGAAGAAATTTTTGTAAGGTACATCAAAATAGTGAGTGAATGGGGATTCCCCTTTGATTTGATGGATCTGAGAATTTTCGCACAAAAATATCTTAACAAAATTGGTAGAACTGTATACACTCTAAAAGATAATCTTCCAGGCCGCGACTGGGCTGCAAACTTCCTATTGCGACACAAAAACACACTTTCTAATCGTCAGTCTGCAAATATATCTTCAGAGAGAGGAAAAATAAATGAGAATATAATAGATTCTTTTTTCGATCACTACGAAAATATTGTCAAAGATATTAGTCCCGATTTGATCATCAACTTTGACGAAACAAATCTAACGGATGACCCTGgatccaaaaaatatatattcagacGTGGCACCAAATATccagaaaaagttattaataattctAAAACTGCTATAAGCCTCATGTTCTCGGGTACAGCAGATGGTGTCTTACTACCATGTTACGTGGTGTATAAATCACAACATTTATATGACACGTGGATGATGGGAGGTCCTGAAACAACCAGATATAATCATACAAGAAGCGGGTGGTTTGATTCAGTTTGTTTCGAAAATTGGTTCGAAACCATTATAATTccctatgttaaaaataaagaagGAAAGAAACTTTTGATTGGTGATAATCTGTCATCACATTTTTGTGAACGAGTCTTGGAATTGTGTGAAAAACACAATATAATTTTCGCATGTTTACCATCAAAATCTACCCACCTCCTTCAACCTCTCGATGTGGCCTTTTTTGGACCCTTAAAACATTATTGGAGGTTGATATTAACGGAGTGGAAAAAAACTGAAGGTAGGAAACAAAAAACCCTCGCCAAAAATTCATTTCCAAGGTTGCTCAATAAGCTCCTCAACAAATTAAACGAACAAAATTCGATGTCTAAAAAGGTAATACCAGGCAAAAATATGAAGGTATCAAGTCAGAATATAATATCAGGGTTTGAAAAATGTGGCTTGTACCCTGTTGATAGAAATCGACCTAAATCAAGGCTTCCTCAAAATATATGCAACTCAGAAGCGGTGCACGAAAACACGTCAAACGCAGTATTAGACATTTTAAATGACTTACGACATTTCGCGACTGAAACGAAAAATCCTAGAAAAAAACGGTGTAATGTTCCCGCTGGGGCTAGTATAACTTTAAAAGACATTCAAGCAGCAACAGAAGGTGAAGTTTTGGCTgctaagaaaaaaacaaatagaaaaaaaatacaacaagaACCTGAATTAACTGAAACCACAAATCAAGATTTTAACAGTGACCTGTCTGTTCAGGCAGAGTCACATGAAGCATTAAAAGATATCTCAAACCAAAAGCCAATCAACGCTGAAGCAACAAAAAAGAAGGAAGGgaaaaaagaaaacacattaaaacaaaaattgcaaCAGGCACCTCAGCATTGTGAAATAGAAATGTTAAACTTAAATGAAAAACTCATAAGTAACACTATCAttgATCAGACGGCAAAGGAACACATCTTTGTAGATgatgaaaattacatttacttTGATTAG
- Protein Sequence
- MVRTYIRKYTNLRKGKSYQPYTIYTKENLNKAVDEVRRNKLSIRDAAKKYNVPKSTIGRRIKNQNTLYEKAGHPTLFSAAEEEIFVRYIKIVSEWGFPFDLMDLRIFAQKYLNKIGRTVYTLKDNLPGRDWAANFLLRHKNTLSNRQSANISSERGKINENIIDSFFDHYENIVKDISPDLIINFDETNLTDDPGSKKYIFRRGTKYPEKVINNSKTAISLMFSGTADGVLLPCYVVYKSQHLYDTWMMGGPETTRYNHTRSGWFDSVCFENWFETIIIPYVKNKEGKKLLIGDNLSSHFCERVLELCEKHNIIFACLPSKSTHLLQPLDVAFFGPLKHYWRLILTEWKKTEGRKQKTLAKNSFPRLLNKLLNKLNEQNSMSKKVIPGKNMKVSSQNIISGFEKCGLYPVDRNRPKSRLPQNICNSEAVHENTSNAVLDILNDLRHFATETKNPRKKRCNVPAGASITLKDIQAATEGEVLAAKKKTNRKKIQQEPELTETTNQDFNSDLSVQAESHEALKDISNQKPINAEATKKKEGKKENTLKQKLQQAPQHCEIEMLNLNEKLISNTIIDQTAKEHIFVDDENYIYFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00923549;
- 90% Identity
- -
- 80% Identity
- -