Lfer004428.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Luffia ferchaultella
Gene Symbol
CSPG4
Assembly
GCA_949709985.1
Location
OX453243.1:5638080-5677050[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 7.4e-16 2.1e-13 50.5 0.0 2 43 29 71 28 73 0.95

Sequence Information

Coding Sequence
ATGTGGCAAAAATGTTGGAACACAAACCAAAGTCTTGTCCACAACTTGCGTTTTAGAGAGCGTGGCCCTTTGAAATCGTGGCGTCCGGAGACCATGGCCGAAGCAATATTCTCGGTGTTGAAAGAAGGATTGTCGCTGTCCCAAGCGGCAAGAAAATACGACATCCCTTACCCGACTTTCGTTTTATATGCCAATCGAGTTCATAACATGCTTGGACCGAGTGCTGACGGTGGTGCAGgACAGACTTGGTGCCTTTATCGTACAAGCAACACGTTTACCTTTGCCGATCACGTATGCCGAATTTCTGCAATCTGGCGGAGTATGTGGGTGTGGTCCATGACACTAAAGCCTatAAGGCTTGAAAGTGGTAGAGTTAAACTTCATATAAATCTTGGGGCCGGTGAGAGTGAATTGTCATCATCAAAAGGACTGCATTTGAATGACACTCAGTGGCATCATGTCAACATCGTTAGAAGAGAAGCCAACCTTACTATgaagGTTGACGAGAATGTTGTGAAAAAAAGGCTCCCCGGTAGATTCTTCGAGCTTAACATTCAATTTGGAATATTCCTTGGTGGGCAAGGCGATTTCTCTGAACTGTTCCTGGgtcatatggaaaattttcGTGGTTGCATGGAGGATGTCTATTATAATGGTGTAAAAATAATAGAGAAAGCTCGTAGTCGCAGTGGTTCGGTGCGCGTGGAAGGTGTGACTTGGAACTGTGCTCCTGAGTTTGATGCTGATATTGCTTCTGATATAAGTTTTATTGAGGAAGGAGCTTATTTGATACTGCCAAGAATTAATTCAAGAGCTGGCGGACGATGGCAAATAGAATTTAAGACTATTACACCTAACGCCATGGTTTTGTATAACGCTGGCGGTGGTAGAGGTTCAGATTTTCTGGCTGTCGAAATTCTGGATGGCGCAATAAGAGTGAAAATGGCTCGAGGTCAAATCATTCATACCGGGCATGTAAATGATGGACAATGGCAcaaaatgcatctacttttcaACCCTTCATTGATAGAGttGTCCGTTGACAATATAGCAATGAGTACTCGCATTGAAAGTGGTGGTATGAGATACTTGGATCTCTCTGATTCCTTTTATCTTGGTGGTATAGAGATTGAAAAAAGACAGCGCGCCTTCGCAAAGGGGATCAAAGCCGCTGATTCGAGTATTATGggTTGTATCCGGCCTGTTGAGGTTGATGATAAATTATTTGGTCTATCAAATGCTGTGGTTACTCATGGTGTGACCCCAAAATGCGTTTGGTGGTACCCCTGTCAGTCTAGTCCAAGCAACCCGCCTTGCATACCGAATGCTGTATGTGAACAACATGGAATTGATCATTTCACATGCAAGTGCGACACAGATTTGTGTATCAACCCAGATTATGCTGAAAAATATAAGgttttctcAAGACAAAGCAGCGAATTAGAACTCGTCGCGTTATATCCTTTGACAGTTCAAGAAGGAGGTGTATCTGTGATCACCACGCAGCATATAGACGTCATTCTAGATCATCATAAGTATGGTGTAAGGCCGTCTGGGGTAGTTTTCCATGTTATACGATCTCCCCAATATGGTCGAATTGCTATAGATCTTTCCATGCAAAGAAATCCACAGCAATACACAAATTACATTGACACGGAAGGAAAACCTAAACAATACTTCACCCTTATGGATTTGTCGCGTGACAaggTCCGCTACGTTCATGACGGGTCTGAAAATCACCAAGATGCCATAGTTCTAGACATGGAATTAATACCTGAAACAAAATTCACACTACCCAGCTACTTACAAGGCCGTAATACGTTCGTGTTACATGTGAACGTAACGCCAGTGAATGATCCGCCTGTACTTAATTTGCTGCCTGGAAAAGTCTTACGATTGACACAGGGTACCAGAAAAGTAATAACTTCGGATATATTGAAAGTTGAAGATCCGGACACACCTCCTGAAGACTTATTGTATACTGTGTTGCACGGAAAAAATGAAGCAAAcagCGGTCATATAGAAATGTCGGGACAGCCAGTTGATTCTTTCACTCAACAAGACGTCGATTCAGGAGTTATATCATATGTCCATGGAGCAGGTAGTGACAAACAGTTGAATAAGACGTCACTTCGTTTGACCGTACAGGTTTCAGACGGCATAGAAACGAGTGGTCCTGGCATACTTCGAATATCTATTGTTCCATTGCAAGTACGTTTAGTCAATAATACGGGTCTACAACTTGTGCACAATTCTTACGCGATCATAACTTCCGACAATTTGACATTTACTACGAACGCCGATGACGAGAACATAGAAGTCAGATACGATATTGTGAAACCTCCACAATTCGGTGTGGTGGAACGGCTGAGAGTATCAGATGGTACTTGGCAAACGGTCGATGCATTCAATAATGAAATGGTGTCATTCGGTCGAGTTAGATATATGCATCTTTTGGGTAGTCCCACTCACGATGAGTTCAAGttcAAAGCGTCAGTGGGCACAGTACGAACCAACACTCTTTACGATTTTCGATTGAAATTCATCGAACTAGAATTATATCAGACCGTGAATGAGGAATTAGTTCTAAACAACACGAGAGAAGCTTTCATATCCTCTCAACATTTACGATTCGAAACAAAACCATTATCTTTGCCGAACGACAGAATTTTATACACCTTAATAAGACCTCCAAAATATGGCATACTACACTTGTCATCTGGTAAACATCATTTGCTAATGCACAGCACTTTCACACAAAACGATATAAACACGGACCAATTATGGTATAGATTGCATAGAAGAGCTTATTCGCATATTCAAGATGAGTTCATGTTTGTAGTAGGTGCGACGGAATGCGAAAACATAACAGGTGTGATGACTATCAAGCATGTACCAAGTGCTTCAGCATCCGACCATCCTTCAGGAAGAGTACACACAACCCTGGAAAGGCTTCAAGTAATGGAAGGATCTAGAATGGCCATCCCTCCCACTCATCTCAATTTCAGAACAGACAGTATCACTAacttagtatttaatattacccATCTACCTAAACACGGTAAAATAGAGGTTGTCAATTCGGACCTCAAAGTAATAAGGGATAATACAACATACTTTATGCTCCAAGAATTGAATGCTGACAGGGTATATTATGCCCACGACGACTCAGAAAGTAGACACGATTCATTCCACTTCATGGCTCTGAGTCCTGAACCGGAAGACTTTCAATATGTCGGCGTGTTtcatatagatataatattgaaaaacgACAACAGCCCGGTGAGATCTAACGAAAAAGTGTTTCACATTGTACACGGTGGGGCGAGGTTGATAACGTTACGCGATTTGAGTTACAACGACGCCGACTTGGATACTAAACCGTCCGATATCATTTACACTGTACAACGATATACAAAAGATCCACCTAACGGCGGATTGTTTCGCGCGGACAATCCGTCTGAGCAAATAGCTCAATTTTCGCAAgacgatataaataaaaatctcgtTTTGTTTAAACACCAAGGGAAAGAATATGGGAAAATTGCATTTTGGATATCTGATGGCCTCTTTGACGTTAATGGCAATTTGGAAATTCAAGCATCCCCACCTTTTATTAGAATGTATCCAACTAACGGGTCTATAGTTGAAAATGGGAAAGCTGTTGTGATCACATCTAGGGACATGCagGTGGACACAAATATGAATTGTTTAGAAGAGGACATTCGTTATGAAGTCACTGATGAGCCTAAACACGGGAGTATAGATGTAGGGGAAGGACAAAGCGCAACTAGTTTCACTCAACTGGACGTGGCGGCTGGACGAGTTGCTTATAATCATAGAGAGCCCAGGACGCCTACAGATATGTTTAAGTTTAAAGTAATATGTTTGGATACATGGGGCGAAGGTCAGTATcccataaaaatatttccatcTAGCTATTGGGAGCCTCTGAAAGTAACTACGAATAAACCTCTTTTAGTTGAAGAATCAACCAGCGTTAATATTACTAAGGAAGTGTTAGAGGTAATGCATCCACAAATAGAGCCTAGTAATATAGTCTATAAAGTGACAGAGGGGCCATACCATGGCTGGCTAGAAATCACGTCCACTCCAGGCACTATAGAAGTTGAAGGCTATAATGAGGAGCCTTTACACACAAAAGTATTCGACCAATCAATTATCAACGCCAATAGACTTGTATATCTCCAATCTGGTGTGAACAGAACACGTGATAGAATAAAAATGGACGTAACTAATGGAATAGTTTGGTTACAAGGGATAGAAttgacaataataattatacccgAACATTTCTATGTGATCAGCACTAATTTGACTGTAGTTGAAGGAAACGATGTTAGCCTTAGACCAGATTTATTTAGGACGATGACGGAGTTCTATAAAGGCAAAATTGTGAGTTATAAGGTTGTGGAAAAACCTAAATATGGTAAAATAGTTATGGGCGATCAAGAGCTTGCGTTACTTCCAGTTTTGAAAATGAATTCGGGAAACATACAgTATATAAATGACGGATCAGAAGAACCACTGGATTCTATAAAGATGGTCGCTCTCACTGAAAACGGTAAAGAAAGTGAACCTTTTAAAGTTACCATCAACATTGTGCCCGTTAATGACGAGACGCCAATAGTAGCTGCGAATACCGGCTTATGCGTTTGGGAAGGGGGCACttttatatttacaagaaaTGAACTATgTGTGAACGATGTGGACACCCCACTCGAGAATGTGACAATAAGTGTAGTGGACATAGTTTCTGGCTATATTGCCAAGAAAGGCGACCTGCAAAATCCTGTAGCATTTTTCACGCAAGGTGACATTGATAAAGGCTTAGTTGTTTTTGTACACCAAAATGGCACCAAAGGCAAGATGATTTTTAATGTCACCGACGGACTACATGAATTAACCAGGATCACTTTTCTCATATCAACAAAACCggttaatttgaaattgatacGTAAACAAAATCTACGTGTGTTCCCGCTTATGAGAGAGCCTTTAACGAGCTTTTTATTAATGACTAAATGCTCAGATCCAACAAGgacaataatatacaaaattgatCGAGCCCCCATTTTAGGACGATTAGTTATACTTAATGGAGAAAATCATCATAGGTCAATAAAACAGTTCACCCAAAGAGATCTAAACGAATCAGTTGTTTACTACGAGCATACACACCCATTCTCCGATTTATACACTAATGATTCATTCATATTCACAGTTGAAGTGTCATTTGGAAAGCCAATAGCAAACCAGCTATTTAGTATTGACATATCTGTGTCCTCGGGTGGCCTATCAAAATATGTGCACATACCGAACATTCAAGTAGAAGAAGGTGCAAAAGTATCAATCATAGTCAACGTCACAAATGTAGTATCTTATTTAGAAACCCAAGCAGGTTTAAGGCAACCAATAGTAGAAGCACAATGGTCACAACCGTCTCATGGTGTATTAGAACCATTTGTGACATCTCTGACGAGAGCACAACTAGAGACTGGTGTCGTTAATTATCAGCATGATCATTCGGATACTTTAGAAGACAAAATTGATATGTCTTTGTACCTACTACCTGACTATGTTTTGTTATGCAATGTCactatacctatacatatattaccAGTGAATGATCAACCATTTAGGTTATTAACAGAGTCACCGCAAATACAAGTAGTACAGGGTGAAAATTATACTATAACAAGGAAGGACTTGTTAACTGAAGACGCAGATACTGAACCATCTgaaatattatatgacattataAGTGGCCCAACCCAAGGTAGGATTATTATGCTGGGTAAAGACCAAATGGATGTTGCTCAATCGATAAACAAATTCACTCAGGACGATATTAATAATGGTAAAGTAGTGTACGAACATTCAGGAATACTACAGACAGCTACATTCTATTTTAGAGTTTGGGATGGTAAATTTAAACCGACTTATACGGTTTTTACTATAGACATTCTACCGATAACTTTAAATGCTTCATCTATGCTACCAATATATCTACAGCAAGGATCAAATGTAGCTACGGTAACAACAGACCAAATGAACATAGAAACCAATGcgaaaaaatcgaaaatttgGTTCAATATAACAAGACAGCCACTTCACGGCATGATATATGTCGGACGAAGTCCAGTGACATATTTTTCTTATCAGGACATAGAAGATAAGATGGTAATATATATGCAAAATGATATGACTACGGCTAATGATAGTTTCGACTTAATAGCTTATGTAAATAACAGTAATTCTACACGCCCCTTCACTGTGCAAGTTATAGTACAGCCACTTATGGTCTTAGGTGATTTAAGAGTTGATACATCAGATAAAACTAAGATCACTTTGAAAACTATGGATGCTACAGGCTTAGCGAAATTGACTGCCAGTGATCCAGTGTATACTATTATAAGAAAACCAAGGTATgggagtataaaaaaaattatcagaagTTCTGGTGAAAAAACCAGTGCTAGAGAGCGTGATGTTGCGTATTTTACTCATGAAGATGTGAAGTCTggtgtaatatattttgtaacgaagaaaatcgaaaatgacTTGAACGGAATTGAAGAtagttttaagtttcttttGGCCGCGACAATATTTCAGCCAGCTGCTGGAGAGGTCAAGATTTTTATAGGCAATCGGTCAAAAAAGAATTTGCCTGGACCCAACGACCCAGAAAGCCATGAAGGAGTGCTGgTAACAAATGGAGAAGCGGCGTCATACTATATGTTAATATTAATGGCTCTATCTGGTACCATATTAGCGATAATTGTAATTTTCGGACTCCTAAAATGTCGACGATTCTTGGCTAAAGATCAGAATGCTTTAATCAAGATACATGGGCAGAATCAAGGCTCTGTTGCTCCTATACCTTTGCCTAGACCACCAGATCACTTGATGCCATCACCTACCCAGGGCACTCCATCTATTAAAAGATATGTGTCATCAGACCAGAGTATGCACACCGGCTCAACAACACCACTACCATCAGCTGGTAGCGTTGCCTGCAAAGTGACACCTCTTGCCCCCGATTCTGCGATTGCAGATCTTAACGCGCGTTACCCATATGGTGCTGAAGATCACACTGATGCCGAGGACTGGAGCAGTTACGAAGCAAGCGAGACGGCGTACCCTGTGAGAGGTGCGCCGCCTCCCAACCCAATGTTGCGTCGCAACCAGTACTGGGTCTGA
Protein Sequence
MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGAGQTWCLYRTSNTFTFADHVCRISAIWRSMWVWSMTLKPIRLESGRVKLHINLGAGESELSSSKGLHLNDTQWHHVNIVRREANLTMKVDENVVKKRLPGRFFELNIQFGIFLGGQGDFSELFLGHMENFRGCMEDVYYNGVKIIEKARSRSGSVRVEGVTWNCAPEFDADIASDISFIEEGAYLILPRINSRAGGRWQIEFKTITPNAMVLYNAGGGRGSDFLAVEILDGAIRVKMARGQIIHTGHVNDGQWHKMHLLFNPSLIELSVDNIAMSTRIESGGMRYLDLSDSFYLGGIEIEKRQRAFAKGIKAADSSIMGCIRPVEVDDKLFGLSNAVVTHGVTPKCVWWYPCQSSPSNPPCIPNAVCEQHGIDHFTCKCDTDLCINPDYAEKYKVFSRQSSELELVALYPLTVQEGGVSVITTQHIDVILDHHKYGVRPSGVVFHVIRSPQYGRIAIDLSMQRNPQQYTNYIDTEGKPKQYFTLMDLSRDKVRYVHDGSENHQDAIVLDMELIPETKFTLPSYLQGRNTFVLHVNVTPVNDPPVLNLLPGKVLRLTQGTRKVITSDILKVEDPDTPPEDLLYTVLHGKNEANSGHIEMSGQPVDSFTQQDVDSGVISYVHGAGSDKQLNKTSLRLTVQVSDGIETSGPGILRISIVPLQVRLVNNTGLQLVHNSYAIITSDNLTFTTNADDENIEVRYDIVKPPQFGVVERLRVSDGTWQTVDAFNNEMVSFGRVRYMHLLGSPTHDEFKFKASVGTVRTNTLYDFRLKFIELELYQTVNEELVLNNTREAFISSQHLRFETKPLSLPNDRILYTLIRPPKYGILHLSSGKHHLLMHSTFTQNDINTDQLWYRLHRRAYSHIQDEFMFVVGATECENITGVMTIKHVPSASASDHPSGRVHTTLERLQVMEGSRMAIPPTHLNFRTDSITNLVFNITHLPKHGKIEVVNSDLKVIRDNTTYFMLQELNADRVYYAHDDSESRHDSFHFMALSPEPEDFQYVGVFHIDIILKNDNSPVRSNEKVFHIVHGGARLITLRDLSYNDADLDTKPSDIIYTVQRYTKDPPNGGLFRADNPSEQIAQFSQDDINKNLVLFKHQGKEYGKIAFWISDGLFDVNGNLEIQASPPFIRMYPTNGSIVENGKAVVITSRDMQVDTNMNCLEEDIRYEVTDEPKHGSIDVGEGQSATSFTQLDVAAGRVAYNHREPRTPTDMFKFKVICLDTWGEGQYPIKIFPSSYWEPLKVTTNKPLLVEESTSVNITKEVLEVMHPQIEPSNIVYKVTEGPYHGWLEITSTPGTIEVEGYNEEPLHTKVFDQSIINANRLVYLQSGVNRTRDRIKMDVTNGIVWLQGIELTIIIIPEHFYVISTNLTVVEGNDVSLRPDLFRTMTEFYKGKIVSYKVVEKPKYGKIVMGDQELALLPVLKMNSGNIQYINDGSEEPLDSIKMVALTENGKESEPFKVTINIVPVNDETPIVAANTGLCVWEGGTFIFTRNELCVNDVDTPLENVTISVVDIVSGYIAKKGDLQNPVAFFTQGDIDKGLVVFVHQNGTKGKMIFNVTDGLHELTRITFLISTKPVNLKLIRKQNLRVFPLMREPLTSFLLMTKCSDPTRTIIYKIDRAPILGRLVILNGENHHRSIKQFTQRDLNESVVYYEHTHPFSDLYTNDSFIFTVEVSFGKPIANQLFSIDISVSSGGLSKYVHIPNIQVEEGAKVSIIVNVTNVVSYLETQAGLRQPIVEAQWSQPSHGVLEPFVTSLTRAQLETGVVNYQHDHSDTLEDKIDMSLYLLPDYVLLCNVTIPIHILPVNDQPFRLLTESPQIQVVQGENYTITRKDLLTEDADTEPSEILYDIISGPTQGRIIMLGKDQMDVAQSINKFTQDDINNGKVVYEHSGILQTATFYFRVWDGKFKPTYTVFTIDILPITLNASSMLPIYLQQGSNVATVTTDQMNIETNAKKSKIWFNITRQPLHGMIYVGRSPVTYFSYQDIEDKMVIYMQNDMTTANDSFDLIAYVNNSNSTRPFTVQVIVQPLMVLGDLRVDTSDKTKITLKTMDATGLAKLTASDPVYTIIRKPRYGSIKKIIRSSGEKTSARERDVAYFTHEDVKSGVIYFVTKKIENDLNGIEDSFKFLLAATIFQPAAGEVKIFIGNRSKKNLPGPNDPESHEGVLVTNGEAASYYMLILMALSGTILAIIVIFGLLKCRRFLAKDQNALIKIHGQNQGSVAPIPLPRPPDHLMPSPTQGTPSIKRYVSSDQSMHTGSTTPLPSAGSVACKVTPLAPDSAIADLNARYPYGAEDHTDAEDWSSYEASETAYPVRGAPPPNPMLRRNQYWV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-