Lfer014617.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453252.1:21626859-21650374[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-10 3.2e-08 34.0 0.0 4 39 182 218 179 222 0.90 2 4 1.6e-10 4.5e-08 33.5 0.3 2 39 234 271 233 274 0.92 3 4 2.7e-12 7.9e-10 39.1 0.0 2 45 289 333 288 333 0.95 4 4 1.1e-17 3e-15 56.4 0.0 1 42 340 382 340 385 0.94
Sequence Information
- Coding Sequence
- ATGCCAAGACACGAACTGCCCCATGTGAAATGTGAGCCGGTTTCCGACGAAGAAGAGTCATTTCACGCATCACAGTTACCGATAGTTTTTGGAGCCGACCATGTAAAATTGGAGGCATTGGAGCCAGTATTTGATTCAGAGCAGTGCACGGCGCCCAGCGCGTTAGATAATGTTCCCGGATCCTCGCATATATTACAACATTTACAACAGGCCAGTGATGGGCTCGAAGAGTTGGCACCTTTGGCACCAACTGCGACGCCCGTGTGTGTCAAACCTGATCCAGATGAGCCTTCTGCACATTTGGAAACTTTGGAGCCTGCACCACATGCCAAGCCTATTAGATCAAGGCTAGATATGGATCGACAAATTTTACTAGACACAGGAGGTGCCATTGAGTTTGTTCCATTGCTGCCCATCAAAGAAGAACCACTTGATGATGGAGATCAACAGCAATTGAGTGGTGAAGACACTAGTGATTCGTGCAGTGGGGGATGTGGAGGAGCTGAGCTTACTAAAATTGGCCCCAAAAGCTGGTCGCAACAGGACATGGAGAATGCACTGGATGCTCTAAGAAACCACAATATGAGTCTAACCAAGGCGTCAGCGCGCTACGGCATACCGTCAACGACGCTGTGGCAGCGCGCGCATCGGCTCGGCATCGACACTCCAAAGAAAGAAGGCGCTGCGAAGTCGTGGAGCGAGGCCGATCTTCGCGGTGCACTGCATGCCTTGCGAGCTGGCGCTATATCTGCCAACAAAGCGAGCAAAGCTTACGGCATTCCCAGCAGCACGTTATACAAGATAGCTCGGCGCGAAGGCATCCGGTTAGCGGCCCCCTTCAATGCGGCTCCCACAAGCTGGCGGCCTTCTGACTTGGAAAGAGCGCTGCACTCCATTCGCTGTGGCCTCAGTTCTGTGCAGCGGGCTTCCACGCAGTTTGGGATACCCACTGGTACGCTGTACGGACGCTGCAAACGTGAAGGAATTGAACTGTCGCGGTCCAGCCCCGCGCCTTGGTCCGAAGACGCCATGGGCGAGGCACTAGAAGCTGTCAgAGTGGGTCAAATGTCAATCAACCAAGCAGCGATCCACTACAACTTGCCATACTCATCGCTGTATGGACGCTTCAAGCGCATCAAATATCAGCCCCagAACACACAATCGGTCCAGCAGGGCGCCGTCCAGCACGAGAGTATGGAGATGGATCACCAAAGTTCAGAACTATACCAGCAGTACCCTCATACATTCCCTTATCACCAAAACAATACACATTACCAAAGTATCGACTCTACGAACATGACACAGGTTAACTCTCATTTACACATGGAACAATTCCATGATATAACGCAGATAGAAGCATATACGGGAATGTACTATCACCACACCCCACAAAACGGCATTGCCACCAGTTGA
- Protein Sequence
- MPRHELPHVKCEPVSDEEESFHASQLPIVFGADHVKLEALEPVFDSEQCTAPSALDNVPGSSHILQHLQQASDGLEELAPLAPTATPVCVKPDPDEPSAHLETLEPAPHAKPIRSRLDMDRQILLDTGGAIEFVPLLPIKEEPLDDGDQQQLSGEDTSDSCSGGCGGAELTKIGPKSWSQQDMENALDALRNHNMSLTKASARYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWRPSDLERALHSIRCGLSSVQRASTQFGIPTGTLYGRCKREGIELSRSSPAPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRIKYQPQNTQSVQQGAVQHESMEMDHQSSELYQQYPHTFPYHQNNTHYQSIDSTNMTQVNSHLHMEQFHDITQIEAYTGMYYHHTPQNGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -