Lchi004403.1
Basic Information
- Insect
- Luehdorfia chinensis
- Gene Symbol
- -
- Assembly
- GCA_029286615.1
- Location
- JAGSMQ010000026.1:7629222-7633712[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0013 0.13 13.4 0.6 1 23 247 270 247 270 0.92 2 12 0.025 2.5 9.4 2.0 1 19 287 305 287 309 0.92 3 12 3.7e-05 0.0037 18.3 3.7 2 23 315 336 314 336 0.97 4 12 0.001 0.1 13.8 1.1 1 23 340 363 340 363 0.93 5 12 0.59 59 5.1 4.0 1 21 366 386 366 388 0.94 6 12 0.00056 0.056 14.6 0.1 3 23 470 490 469 490 0.96 7 12 0.062 6.3 8.1 0.4 2 23 510 532 509 532 0.96 8 12 1.3e-06 0.00013 22.9 4.2 1 23 538 560 538 560 0.98 9 12 0.00041 0.041 15.0 2.5 1 23 565 587 565 587 0.98 10 12 0.011 1.1 10.5 3.4 2 21 594 613 593 616 0.93 11 12 1.9 1.9e+02 3.5 2.5 1 19 624 642 624 647 0.88 12 12 0.055 5.5 8.3 5.4 3 19 656 672 655 677 0.92
Sequence Information
- Coding Sequence
- ATGGAGCAAGAGGTATTTACTATGGACACAGAGGTTCTATATCCGGTCCTACTTATACCGAAAAAGTGTACAACGCTGGAAACCACCTGCGAAGCCACTGACGATGTCTTTATAGACCTCAGCATTACGTCAGCAGACACTGAAGGTAATGAAATGTGTTTATACTCAGGATTCTGTAATGTGAAACTCATCGATAGTTATGACGTTAACATACGCGAAGTGGAATCTACGTCAACATCAGAATCCAATGACAATGATCAAATACCAGTAGTAACTGAAGCGAGCAACCAATCCTCTTATCCTCCATACAAGCCCATACATTATTCACCTGCTGAAGAGTTTGAGCATAAAAAGTTCAGAAAGGTTCAAGCAACTGAAACAAATCAACAAAACAGTTCAGCTGAACCAAACAATCTATACGAAGATGATGAATTTGAATGTGGAGTGTTTTTGTCTCAGCTGTCtgaagaaattattaatgagAAAGAATCCAGGGCCAGGGAGGAACTCCGTTACATAGGTCTGCAGAGTGAGAATGATGCACTGAAACAGCTCATGTCATCAGATATACAATCACTGTCCAAACAGCAGAAGACTATACTGTTCTTAGGCCATGACTCACACTTTGGGCAGACCATACAGAAGATTGCTGTAAATGATCCATCCTTGGAGTGTGCTGGTGGTAGTGAAGTTGATCGAGAAGTAATTGCTGAAAACAACAAACCCAaccagaaaaaatatcaatgtgataaatgtaaacaaatatttgatcaaATAGCTACTTTTAAGCAACACATGGTGGGAAGTCATAGGAGCGCTAAAGATGTATACGCTTCTGGTTCTGAGAGCGAGGTCAAATTCATGTGTACTGAATgcggtaaaaatttaaaaagccaGGAGAAATTTGAGATGCATTGTCTTGGCCACGGCGATCCAGAATTAGAATGTAGCAAGTGCCATAAAGTGTTCGCTTCGAAGTTCACTTTAAGAACTCATCGTAAAATACATTTCCGAAAACACCCATGCGACTTTTGCACGAAGACATTCACTAAAGTCGAAGATTTGAGGGTTCATGCCGCCAaaacacattttgtttttatgtgtgaTACTTGTAATTACACAGCTAATAAATACCAAGATTTGCAAACGCATCAAAAATGCCACACGAATCCGCGGGAAAATAGTGACTCTGATTCGTGCATATCTTTCGACGATGACGTCACAGATATTGTGACGAACACGTCTTTTCCcaagttaaatgatttaaaatcggaaaatgcagatgaaaattacgcAACTCAAGAAGAAATTAGAAAAGCTGACTCGGTTATAGCCAAAGTGATGtctaataaagtttttctgcTCCATGCAAAGAAGGCTAGGAGACacaaaagatataaaaagGCTTGCGATGTCTGTTTAAAATCCTTCGACCGGATCGGAGACCTGAAGAGGCACCTCATAGAACACGTCATTAGAAGCACTCTAGCGAAGAACCCAGTGAACAAAAACGGCACCCTCAACATCCAGTGCGAGGTATGCCAAACGGAAACCTTCACTAAAGTAGACAAATATAAAGCACATTTACGTGAACACGCAAAATTAACCTTGTACCAATGCACGTTTTGTAACAAATCGTTTAGCGACTCTAGCAACTTCtcgaaacacaaaaaaatccACGGCGTAACTTACTTTCAGTGTGATCTCTGTCAAAGAAAATTCAACTCGAAGAAAATGATCACACAACACATGGAGTACCACAATAATAATTCGCCGATACCATGTTTTTATTGCAACAAAGAGTTTCATTTCGAATCCATGCTTAATAAACACATTAAATGCGCTCATACAAAGGAGATGTCAACTAGATTCCGTTGTAGATTTTGccatcaatattttaaaacgttgAAAGAAAAGTGGGATCACGAATGGACCGTTCATAACGTTAGGAAAATGATAGTCGATTGTCTCATCTGCGGTTGTAAATTTAGGAAATATTCCGAATTGAAAAGGCATTGCAATGATACCCACGACTTAGAAATACCACCCGCTAAAAAGTTACTGAAGAAACAGAATTCCTAg
- Protein Sequence
- MEQEVFTMDTEVLYPVLLIPKKCTTLETTCEATDDVFIDLSITSADTEGNEMCLYSGFCNVKLIDSYDVNIREVESTSTSESNDNDQIPVVTEASNQSSYPPYKPIHYSPAEEFEHKKFRKVQATETNQQNSSAEPNNLYEDDEFECGVFLSQLSEEIINEKESRAREELRYIGLQSENDALKQLMSSDIQSLSKQQKTILFLGHDSHFGQTIQKIAVNDPSLECAGGSEVDREVIAENNKPNQKKYQCDKCKQIFDQIATFKQHMVGSHRSAKDVYASGSESEVKFMCTECGKNLKSQEKFEMHCLGHGDPELECSKCHKVFASKFTLRTHRKIHFRKHPCDFCTKTFTKVEDLRVHAAKTHFVFMCDTCNYTANKYQDLQTHQKCHTNPRENSDSDSCISFDDDVTDIVTNTSFPKLNDLKSENADENYATQEEIRKADSVIAKVMSNKVFLLHAKKARRHKRYKKACDVCLKSFDRIGDLKRHLIEHVIRSTLAKNPVNKNGTLNIQCEVCQTETFTKVDKYKAHLREHAKLTLYQCTFCNKSFSDSSNFSKHKKIHGVTYFQCDLCQRKFNSKKMITQHMEYHNNNSPIPCFYCNKEFHFESMLNKHIKCAHTKEMSTRFRCRFCHQYFKTLKEKWDHEWTVHNVRKMIVDCLICGCKFRKYSELKRHCNDTHDLEIPPAKKLLKKQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -