Lchi012761.1
Basic Information
- Insect
- Luehdorfia chinensis
- Gene Symbol
- ZFHX3
- Assembly
- GCA_029286615.1
- Location
- JAGSMQ010000118.1:1239578-1252341[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00027 0.027 15.6 1.8 2 23 116 138 115 138 0.95 2 17 6.7e-05 0.0067 17.5 0.7 1 23 170 194 170 194 0.92 3 17 0.0099 0.99 10.6 0.4 1 22 244 265 244 268 0.91 4 17 9.4 9.4e+02 1.3 0.2 1 23 523 547 523 547 0.87 5 17 0.0068 0.68 11.2 4.1 2 22 694 714 694 717 0.91 6 17 0.78 78 4.7 1.1 1 23 729 754 729 754 0.91 7 17 0.012 1.2 10.4 1.3 1 23 772 794 772 794 0.97 8 17 0.0015 0.15 13.2 0.3 2 23 801 823 800 823 0.96 9 17 0.00026 0.026 15.6 3.1 1 23 929 953 929 953 0.92 10 17 0.011 1.1 10.5 0.7 1 22 973 994 973 997 0.89 11 17 0.0011 0.11 13.7 0.2 1 23 1044 1068 1044 1068 0.93 12 17 1.7 1.7e+02 3.6 0.1 3 21 1143 1161 1142 1162 0.90 13 17 0.79 79 4.7 3.5 2 19 1252 1269 1251 1274 0.91 14 17 2.8e-05 0.0028 18.7 2.9 1 23 1779 1801 1779 1801 0.99 15 17 0.00073 0.074 14.2 0.3 1 23 1888 1910 1888 1910 0.98 16 17 0.0069 0.69 11.1 0.4 2 23 2048 2070 2047 2070 0.97 17 17 0.7 70 4.8 1.6 2 22 2299 2319 2299 2322 0.88
Sequence Information
- Coding Sequence
- ATGTTACCTAATGGAACATGTGATGACAGAAGACCGAGTCCACCAGCATGGAGACCACCACGATCAATAGCTGAATCATTACTTCCACAACATTCCTTAATCTCTGTTGCCCATCCTCATACAATTAATGCTTCAATACAGCCCCGTGCTAGTCCAAACTCATCACCTCCGTTTCAGGCGGCGCCTCCTGCCTTTCTTTCTGGAACAACAATTGGTGTATGCCCTGATCATCTCGGAGGTAGGCCATCTGGTGCAGACTGTCCTAAATGTGAACTTATTTTGAATTCAGGAAGACTCGGTGGTCCTTTAGCGGGCATGCACAGCCGAAACTCCTGCAAAACATTGAAATGTCCGAAATGTAACTGGCATTACAAATATCAAGAAACTTTAGAAATACACATGAAGGAAAAACACCCGGAAGCCGAAACAAGTTGCATTTATTGTATAGCTGGACAACCCCATCCTCGATTAGCCCGCGGCGAAACATACACGTGTGGTTACAAGCCGTATCGATGTGAAGTATGCAATTACTCTACGACTACAAAAGGCAACCTTAGCATACATATGCAATCagacaaacatttaaataacatgCAGGAATTACAAAACGGTGGCAACCCTGGTGAAGGTTCACTACCCCCCGCCCCTCAGCATACACCTCCAGGCACACATGGCCATAAACCACCGCTTCCACATCATTCGCCTCTAGGACAAAAACCAAAACCTACGTTTCGTTGCGATGTTTGCAACTACGAGACGAATGTTGCTCGCAATCTCCGAATACACATGACATCtgaaaaacacacacacaatatgCTGGTACTTCAGCAAAATGTGAAGCATATGCAAACACTTTCAGCTCTACATCATAGACAACAAAGTCAGCAGCAGCTGGAGAGCTTGCTACATTTCCACAGTGGAGAAGCGCCACCTCCAAATCCAGAAGCGGCGCTTGCTGATATGGCATACAACCAAGCGCTAATGATACAACTTATGACAGGAGGTCCAGGACCATCACCTCCAGAATTAGGAGCGCATCTTGATGTGGGATTGAACCCAGAAGCGatggaaccgccaccagaacCAGCAGACCCTGAGCCCGAAAGAACGTTCCACTGCTGCATCTGCAATTGTTTTTCGACAGATTCTTTAGAAGCACTAGGTCACCATTTAGCGCAAGACCGTACCAAAATAAGAGAGCAAGAAATATTAGCACTGGTTGCTGGACATTACGTATGCAAACtatgtacatataaaacaaacttaaaaGCTAATTTCCAGCTTCATTGCAAAACTGATAAGCATCTGCAAAGACTGCAACATGTTAATCACGTTAAGGAAGGCGGCCCACGAAACGAGTGGAAGTTGAAATTTTGTGGCGGTGTGGGAACAAGTGGTGCTGGTGTTGGTGGCGTACAAGTTAGATGCTGTGCTTGCGACTATTACACGAACTCTGCGCATAAGTTGCAGCTTCATGCTGCTGGAGCTCGGCATGAAGCGGCCACGCTTTTATTGAGACATCTTCGAGAATGCGCAGCTAGAATACCGCGCGATCGCGCCCGTGTATATCGCTGCGCATTGTGCGGTTTCGGTGCCCCGCATCGTTTGCCCCTTCTACAGCACGTGCGCTCCGTTAAACACTTGCAAATGGAACAAATTCATCAACTGCAACGTCGGTCCGAGGGCAAAGACCCCACACCTGATGTAGCTGAGCTCTTCCAAGTCATTCCCCAACCACCGGAGCTAACCAGCCCGTATGATCAACAGGATGATAATAAAGAACCCATTGACCAGAAGCCTGAATTGACACAAGAACAGAAAATGATGCGATTTTTAGAACAGCAgcagcaacaacaacaacagcatCAACAACAGCAAATCCAGCAGCAACAAGCTCAACAGCAGCCCCAACAAGGGCCAATTAACTCCGAAGGATTGCAACGACTGTTACTGCTCGTCGACCAAAGTCACTGGTTAAACGGAGGTGCTCAAACACAGAGAGAAGAAACACGACAAGGAGATGACGAACGTGAAATTTCATCACCACGGTCGGAAGGCAGTGTCGATGGCGAAACTGAACGATGTTCCACCTGCAACAGAACCTTCCGTAACGTTGACGAACTATGTCACCATCAAAATGAATCCGGCCATTTAGAATTAAAACAAACACCACAAGGGCCTGGATATTTCTGTTGGAAAAAAGGATGCAATAGATACTTCGATGCAGCTCATGCTCTCCAAAATCACTTCAGAGAGGCGCATGCCCGAAACTCTACTGCAAACATGTCTGTCTCTGAAAAACATGTCTATAAGTATAGATGTAATCAATGCAGCTTGGCTTTCAAAACTATTGAGAAATTACAACTTCATTCTCAATATCACGTTATACGTGACGCTACAAAATGTGTGTTATGCGGGCGAAGCTTTCGATCTGTATTAGCGCTTCAGAAACACGTGGAAACTTCCCACTCTGAGCTTTCAGAAGATGACCTTGCTGCTTTTAAACGAAGTCTCGCGACAAACCCTTTGTTGCAACACAATCAAGCTTCTGCATTAGATCATACTACAGCAGAACTTTTACGGAAAGAAGCTCTTAGAACACCTGATGATGAGTTAGGTGAAATAGAAGACAGAGACTCGAGCGCAACAGCAGCCGACGAATCCGGCCACAATGACGCAGAGAATTCTGATGACTCAATAATTTACAAAGACCAGCAGTTTTTGGAAGACTATTTAAACTCACAGGCAATGGCCGAAGACTCATACAATGATCCCAACAGAAAATACAAATGTCACAGATGCAAAGTAGCTTTCACCCGTCAGTCTTATTTGACTGCGCATAACAAAACACTTCTACATAGAAAAGGTGAGAAATTAACGTACCCAATGGAAAAATATCTTGATCCCAATCGACCATTCAAATGCGATGTATGCAAAGAGTCTTTtacgcaaaaaaatattttactcgtCCATTACAACAGCGTCAGTCATTTGCACAAACTAAAGAGGGCCATGCAAGAACAACAGAACAATAACAACCCTCCTGTGTCGCCCGGAGCGGGAACGGCGCCCTCTAATTTGACACTTACACCCAAGAGCACGTCGAGTGAAGAAGATGATCGGAAACGGTATAAGTGCAATATTTGTAAAGTTGCCTATACACAAGGCAGTACTCTAGATATTCATATGAGATCTGTGCTGCACCAGACGCGAGCGGGTAAATTGCAAGAGCTAGCTGCTGCCGGTCATGTGGATTTGACACGGCCTTTAGTAGAGCAACCCGACAGAAACGATCCCGCCAAAATATTACAAGACGTATTGTCGCCGAAAAATACATCCCCTTCTTCAACGAGCAGCGGGGGGGCCCGTTCTTCACCCCCCGCGCGCCCAGGTAGCCCTCGCTCCCCTCGCGCAGGTAGCGCCTCGTGCGATCGGTGCCACGCGTCATTTCCTACCGGGGAGCTACTCGACGCACATCGTGCGACCTCATGTCTGTTTGGCGATGCGCGGGCGCATTCGCCGCTAGGGGACGCAGAGCAAGCTGCATTAGACGAGATGGTTGCCAAAGGCAACCCGCCCAAACGAAATTCACAAATGTATAAACAGCTTTTAGAGACTTTCGGTTTCGATCTCGTCATGCAATACAATGAGAATCAACGGCGCAAACTGCAAGAAGAACGCGAAATGGCGCGAGCACCAAGCCCGCCGCCTCCGCCTCCCGAGGAAAAGCCTCCGGATAGTGAAACGAAGTCAACGTGTCAACATTGTAATAAGGAGTTTTCTAgtgtctttgttttaaaaactcaCTGTGAAGAAGTGCATAAAGATAAAGTTCCGTTAGAGTTTTTAGAACAGTTCGCTGAGCAGTTTAAATCGGAATATGAAAGAAAATCGGGGGCACCAAATTCGCCCCGTGCAGCATCTCCCGCGCCGCAAGACGAAAGATCACCTTCGCCACGAGGTGATGCGAATAGCAGCTTTAACGAAAACGGAACCGGTCCGGGTGATGCCCAGGCCGGTGCCCTGTTGGCAGCTCAGGTACAAGAAATGCAAGCTGCCCTCAATATGCTACAACTACAGCAACAATTAGGACAGTTACACCCCATGATGGCTCAAATGCTGTCATTAGGATTGCCTTTAGGCTTGAACGTCGGTGCTCTGGCGGCTATGAATCTGCAGCCGCCGCTTGTTCCACTGATGCTCCCTCCACCACCTTTCGACGCGATTCCTTATGGTCACGACGCTCAACTCAAACAGCAGCAGCTTTTACAGCAACAGCAGCAGgCAAACGCTGCGGCTGGACAAAAACGAGCCCGCACACGTATAACAGAtgagcaattaaaaatattgcgcgcgcattttgacattaataactCCCCAAGTGATGAAgcaattgcaaaaatggcacaGCAATCTGGTTTAGCTACGAAAGTAATTAAACACTGGTTCCGGAATACACTCTTTAAGGAACGTCAACGTAACAAAGATTCgccttataattttaataatcctCCTTCAACGACACTTAACCTAGAAGAATATGAAAAAACAGGTGAAGCTAAAGTCACACCCCTGGATTCATCAGCAAGCTCTGATGAAGGTAAGCCGCCGCctgaaaaaaaagcaaaaactgAAGACTCTGCATCGATAAATCAGCCTGAAGTCAAATCAGAACCATGCGATGAACCAACAATGGAGGAGAAATATAACTCTTACGACGACCGACATCAAGAAGACAAGAGCTTCATATTTCCTCAAGCGCCACCACAAAGTCCAGCTTTAAATAACTCTGACAATCAACAAAACATTTCGCGTCCACAGACGCCGACACATCTGTCTTTAAATTCATTAATCCAGTCGCAGTTAGATTCGATACCAGCAACAAGCATTCCGCAACCACCACATCCATCGATGTTGCCACCTAAAATAAATCCTAACTTCACGTCCCCAAACTCCGTGCCCCCGAACGTCCTACCTTTGACCCCGAATCGCAGCCTCAGTCCTGGCAGAGGACCGGCGGATTTCGGACTTTCTGGGGGCAACTCGAATGGATCCAACAGCTCGGGGTCTTCTGGCAAACGCGCCAACAGAACTAGGTTTACAGACTATCAAATTAAAGTACTACAAGAATTTTTCGAGAACAACGCCTATCCTAAAGACGATGACTTAGAATATCTTTCAAAACTTCTCGGACTCAGCCCGAGAGTAATAGTGGTGTGGTTTCAAAACGCACGTCAAAAGGCGAGAAAAGTTTACGAAAATCAACCTGCTGCTGAACCACCTACAGGAGCTACAGATGATGCAAATAGATTTCAACGTACACCCGGTTTAAATTATCAGTGCAAAAAATGTCAACTAGTGTTTCAAAGGTACTATGAATTAATTAGGCACCAGAAAACACACTGTTTCAAAGAAGAAGATGCGAAGCGTTCTGCTCAAGCACAAGCAGCTGCGGCTCAAGTAGCTGCCACTTTAAGTAGTGAAGATTCAAATTCAAGCATCGTAGAACACCATGTCCCACACGTCCCTGTTTCACCCGCACCACCTCGTACCCCTACACCAGCAGCTTCTAACTATCCAGTTTCACCAGCCCCACAAGCCCCACTTACACCGGTAACACCAGTAAGTCATCCGCCACGAACTGAAGAGAAAGATGGCAATTTTCAATGTGATAAATGCAACCTAGTCTTCCCTCGATTTGATTTATGGCGAGAACACCAACTAGTTCATATAATGAACCCAAACTTATTTCCCTCATATCCACCAGATTCCCCTTTTGGAATACTACAGCAACACGCTCAGCTACAACAGTTAAACGCCACTCTCGCCAATGATGAATCACGTCACCCTTTAGTGGCAGCGTTAAACCAACAGGTTGCTAAAAGAAAATTTGATGAGTATGAAGAAATAGATACAGGGGAGCAACCGAAGGACAAGCGCTTAAGAACTACTATTTTGCCTGAACAGTTAGACTATTTATATCAAAAGTACCAAATAGAATCAAATCCATCACGAAAAATGCTTGAAAATATTGCACGTGAAgttggtttaaaaaaaagagtggTACAAGTTTGGTTTCAAAATACTAGAGCTCGTGAAAGAAAAGGACAGTTTCGGGCACATGCACAAGTTATAAATAAGCGATGTCCCTTTTGCCCTGccttatttaaagttaaaagtgCTCTAGAGAGTCACTTAAGTACTAAACACGCCGATCAGTGCGCTAGAGGTGAAATTAACGTAGATGCACTGCCAGACGAAGAATTAAGCACTGAATCAACTCCAAGTTTTGGTTCACAACAAAGTGATAGACAGCAAAATTTTTCCCAAGCGGGGGCTCCCATGTTGCCCCCTATTTTCCCGCCTTTTCACTCAGACATGGAGAAATTTatcaagcagtatagtgaagaATCAATGAAACGATATGTAAGTGAATTACAAGCTCACGCTGTAGCCCAACAAAATGGCGCTAGCAATGACTCTTCTGAAAGAGAAATATCACACGTTAAAACAGAAATACCATTAGATCTCAGCAAACCAGTTGATCTGTCACGACCAGGATCGGATGCAGACGAGCGTTCAGACACTGCATCTGAGACTATGGAGTTCTATGAAGAAGATGAACCAACGTCTCCATTACCGGGTCAACTACAATCGTCTAGGCCTCCTGGAAAACGTTTCCGCACTCAAATGTCATCAGTGCAAGTGAAAATAATGAAGTCTTTATTCAACGACTATAAAACTCCAACAATGGCAGAATGCGAAGCTTTAGGACGGGAAATTGGTCTTCCCAAGCGCGTGGTACAAGTATGGTTCCAAAATGCACGTGCCAAAGAAAAGAAAGCACGGTTGGCAGCAGGTCTACCAGAAGTGTCGGATGCCCCGCCACCTGAAGAATGTCGGGTTTGTGACTTCAAGTACAATCACAAGTACTCCGTGCAAGATCACGTGTTCACGCGTGGCCATATCACAACGGTCCGTGCGAGGTTAGAGAGCGGCGTTGGTGGCGGAGACGACAGCACTCTGGCCCTCATGCAGATGGCGGCTCGGCTCGAGAGCGGCATCGGCAGCGAACTGCACAACGCGTTCCTGAGGCCTCAACTCGCCGGCAACGGTGAGTGCACCACTTGA
- Protein Sequence
- MLPNGTCDDRRPSPPAWRPPRSIAESLLPQHSLISVAHPHTINASIQPRASPNSSPPFQAAPPAFLSGTTIGVCPDHLGGRPSGADCPKCELILNSGRLGGPLAGMHSRNSCKTLKCPKCNWHYKYQETLEIHMKEKHPEAETSCIYCIAGQPHPRLARGETYTCGYKPYRCEVCNYSTTTKGNLSIHMQSDKHLNNMQELQNGGNPGEGSLPPAPQHTPPGTHGHKPPLPHHSPLGQKPKPTFRCDVCNYETNVARNLRIHMTSEKHTHNMLVLQQNVKHMQTLSALHHRQQSQQQLESLLHFHSGEAPPPNPEAALADMAYNQALMIQLMTGGPGPSPPELGAHLDVGLNPEAMEPPPEPADPEPERTFHCCICNCFSTDSLEALGHHLAQDRTKIREQEILALVAGHYVCKLCTYKTNLKANFQLHCKTDKHLQRLQHVNHVKEGGPRNEWKLKFCGGVGTSGAGVGGVQVRCCACDYYTNSAHKLQLHAAGARHEAATLLLRHLRECAARIPRDRARVYRCALCGFGAPHRLPLLQHVRSVKHLQMEQIHQLQRRSEGKDPTPDVAELFQVIPQPPELTSPYDQQDDNKEPIDQKPELTQEQKMMRFLEQQQQQQQQHQQQQIQQQQAQQQPQQGPINSEGLQRLLLLVDQSHWLNGGAQTQREETRQGDDEREISSPRSEGSVDGETERCSTCNRTFRNVDELCHHQNESGHLELKQTPQGPGYFCWKKGCNRYFDAAHALQNHFREAHARNSTANMSVSEKHVYKYRCNQCSLAFKTIEKLQLHSQYHVIRDATKCVLCGRSFRSVLALQKHVETSHSELSEDDLAAFKRSLATNPLLQHNQASALDHTTAELLRKEALRTPDDELGEIEDRDSSATAADESGHNDAENSDDSIIYKDQQFLEDYLNSQAMAEDSYNDPNRKYKCHRCKVAFTRQSYLTAHNKTLLHRKGEKLTYPMEKYLDPNRPFKCDVCKESFTQKNILLVHYNSVSHLHKLKRAMQEQQNNNNPPVSPGAGTAPSNLTLTPKSTSSEEDDRKRYKCNICKVAYTQGSTLDIHMRSVLHQTRAGKLQELAAAGHVDLTRPLVEQPDRNDPAKILQDVLSPKNTSPSSTSSGGARSSPPARPGSPRSPRAGSASCDRCHASFPTGELLDAHRATSCLFGDARAHSPLGDAEQAALDEMVAKGNPPKRNSQMYKQLLETFGFDLVMQYNENQRRKLQEEREMARAPSPPPPPPEEKPPDSETKSTCQHCNKEFSSVFVLKTHCEEVHKDKVPLEFLEQFAEQFKSEYERKSGAPNSPRAASPAPQDERSPSPRGDANSSFNENGTGPGDAQAGALLAAQVQEMQAALNMLQLQQQLGQLHPMMAQMLSLGLPLGLNVGALAAMNLQPPLVPLMLPPPPFDAIPYGHDAQLKQQQLLQQQQQANAAAGQKRARTRITDEQLKILRAHFDINNSPSDEAIAKMAQQSGLATKVIKHWFRNTLFKERQRNKDSPYNFNNPPSTTLNLEEYEKTGEAKVTPLDSSASSDEGKPPPEKKAKTEDSASINQPEVKSEPCDEPTMEEKYNSYDDRHQEDKSFIFPQAPPQSPALNNSDNQQNISRPQTPTHLSLNSLIQSQLDSIPATSIPQPPHPSMLPPKINPNFTSPNSVPPNVLPLTPNRSLSPGRGPADFGLSGGNSNGSNSSGSSGKRANRTRFTDYQIKVLQEFFENNAYPKDDDLEYLSKLLGLSPRVIVVWFQNARQKARKVYENQPAAEPPTGATDDANRFQRTPGLNYQCKKCQLVFQRYYELIRHQKTHCFKEEDAKRSAQAQAAAAQVAATLSSEDSNSSIVEHHVPHVPVSPAPPRTPTPAASNYPVSPAPQAPLTPVTPVSHPPRTEEKDGNFQCDKCNLVFPRFDLWREHQLVHIMNPNLFPSYPPDSPFGILQQHAQLQQLNATLANDESRHPLVAALNQQVAKRKFDEYEEIDTGEQPKDKRLRTTILPEQLDYLYQKYQIESNPSRKMLENIAREVGLKKRVVQVWFQNTRARERKGQFRAHAQVINKRCPFCPALFKVKSALESHLSTKHADQCARGEINVDALPDEELSTESTPSFGSQQSDRQQNFSQAGAPMLPPIFPPFHSDMEKFIKQYSEESMKRYVSELQAHAVAQQNGASNDSSEREISHVKTEIPLDLSKPVDLSRPGSDADERSDTASETMEFYEEDEPTSPLPGQLQSSRPPGKRFRTQMSSVQVKIMKSLFNDYKTPTMAECEALGREIGLPKRVVQVWFQNARAKEKKARLAAGLPEVSDAPPPEECRVCDFKYNHKYSVQDHVFTRGHITTVRARLESGVGGGDDSTLALMQMAARLESGIGSELHNAFLRPQLAGNGECTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00213858;
- 90% Identity
- iTF_01209635;
- 80% Identity
- iTF_00922720;