Lchi020875.1
Basic Information
- Insect
- Luehdorfia chinensis
- Gene Symbol
- zfy1
- Assembly
- GCA_029286615.1
- Location
- JAGSMQ010000288.1:580033-590374[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.1 5.1e+02 2.1 0.3 2 23 6 27 5 27 0.94 2 13 0.0033 0.33 12.2 0.8 1 23 1015 1038 1015 1038 0.93 3 13 1.4e-05 0.0014 19.6 1.7 2 23 1142 1163 1141 1163 0.97 4 13 0.00016 0.017 16.2 2.0 1 23 1169 1191 1169 1191 0.98 5 13 0.0067 0.67 11.2 2.5 2 23 1198 1219 1197 1220 0.95 6 13 0.46 46 5.4 1.9 5 23 1233 1251 1231 1251 0.97 7 13 0.006 0.6 11.3 1.9 2 23 1257 1279 1256 1279 0.96 8 13 0.0098 0.98 10.7 0.2 2 23 1296 1316 1295 1316 0.97 9 13 0.00048 0.048 14.8 0.7 1 20 1322 1341 1322 1344 0.89 10 13 0.0063 0.63 11.3 4.1 1 23 1352 1374 1352 1374 0.99 11 13 0.0047 0.47 11.7 7.2 1 23 1380 1402 1380 1402 0.98 12 13 5.5e-06 0.00055 20.9 1.3 1 23 1408 1432 1408 1432 0.98 13 13 0.00086 0.086 14.0 5.1 1 23 1438 1460 1438 1461 0.95
Sequence Information
- Coding Sequence
- ATGGATCAAAGGGTTCAGTGCCCGGTGTGCACTCTGTATCTGCACAGTGGGATGACTTTGGAGTCTCACTTGGATACTCACCCAAAAGATCAAGTTATAAAAGCATTATGTAGTTTGTCAACAAAAAGCAGCAGCTATGGGAGTCGCACTCCTACTCCGTCACATTCTGAGCGTTCTTATAGGAGCAGATCCCGCACTCCAGCGGCTGATGATAATATGAGATGGATGGGCACCCATCGGACTTCAGACAGTGATAGATACTGGAGGAGAACACCGAGTAGAAATAAATCCACACCTATGTCAAGTATATCAGTATCAAGGAATGTTACACCTGATATAAGAATTGgagaaattaattttgaaaataccaCTATTAACCATGGAGATCAGTATCCAGACCCTTCATATGCTATGAAGTCTGATAAAACACAGCAAACCTATATTCCGAATGTAACAGTGTCTGATTTTGATCATCAGTATCCATATTACACAGAGCAAACAGAAGACCGTGAGATTAAGTATTCTCGTAGTACAGATTATAATTCAATGAATAACagtagtaatgttttcacatataATATGCCACCAATGGGACCTGTTCCCAATCTGAAGCCTCCTACATCTTCTGCACCAACAATCTTACCACCGAAGAAAAACAATGACGTTGTTAAGTTACTGTCTAAACCAGACCTTGTTAAATTACTGCCAAAgtctaataatattcttttcaAAACAAATATGAGTGGAGTACAATATTTAGCACCTGGTGTTAATGTAGTCATGCCAACAACTCCAACTTTTGTTCAAAAGAATGTTCAAAATAACATGATAATGTCTGGAAATGTACCACCTGCTCAAATTCTAGATACCAAAGCAGTAGCTCAACCTATAGCTGCCAACCAATATAACCAAATGGGACAAGGTACTTTTTCACCGGGCACAACAGTTGTCACTCAAAACTCACAGATAATTTATAGAGAAATGGTTCACAATATAGATGGAAAACCTTTTATTTCAACTATGCCAACAGTACTTGGCAGGCATGACAATGCTCCAAATGTTGCACAGAGTAGTTCTATGTACCAGAATGTAATGGTAGTTGATCAATTTGGAAATACCTCCTGCATGTACGCAGGTCCACAACAAATCCTCCAAAAGCCTTGCAATGCATCAGTTTATACTGAAAATACGTCGCTTCTGCCTAATTCATCATCGGATAAATTGGGGCCTAATATTGTGAATGATGGCAATAAAACTCTTATTATTGAAGTAGGTCCCATTGTTTCTCCAGCTGCAGTTACTGTCTGTGATGCAAGCACAAGTGCATCACTTCCACTACCTTCTGATACTgaggatataaataaaaaggaaatagaAAAAACTGAGCTGAAGAGTGAGTCTGCTGGAATAAATAAAGGCCTTAAAATTCTTAGTAACATTAAAGTGGAAGTTCCAGTCCAGCATAATAAAAGCATGTTGAATACTGTAATGGACCTTACAGGAACTAATGATCAAGAATACCCAGATAGGTCAATTACGCCTGAAAAAATTTTACCTGATCTAGATGACAATAACCAGAGCTATTCAGATGAATGTACTCAGCCATCTATAGCAAGTGGTGATAGCTTGGTGTCAAATGCTTTTTCTGTGATAAAGAATGTAGGAAATCCTCCATCATACAAAGATTCGCCTTCGAAGTCTAGTATAGTAGGTAGTAAAATTGAAACAGAATTTTCTGATAGTTGTCCTGTACCtgatttaatatgtaatgaGAAGCCTTCAATTTCACCCTGCAGTGAATTATCTGAGCATGGGGACAATTCCACTGACCATGCCTCATTGTCTCCCAAACCTGACTGTAGTAGAAGTAATCAAAACAATATAGACAGTAACATAGGTGATAGGAAATTCTCTCACAAGCCGTTCAGAAATAATGCACTCAGgttgaataatatatatgttaagAAGCACAAGAAGATTCTGCAGATCAAGAACTCAAAGGCATCTTTAACTGTCAATACATCAAATAAAACTGAGATGGAACCTATGGCATCTTCATCTATATGTAGAACTCCAGAAAATTTTAGTATCAACAAAATACATCATACTGATAGAACAGAAGGAAAATCCAACACATTACAAACTGTGTCTATTGAGAAATTAAGAGATAACGATCAGAGTGAATTTGACGCAGACACAGAGGAACAATCAATGGATATAGAGCCTATGGCACCATCAAGTTTAAATGATTCTAATCAATATTCAAGTAATGTTAAAGTGCAGGTGAAGGAAGAAGTAAACACAAGTAATGAGGGGGGTTACAGCAATCAAGATAGACTAGAACGTAATATGACGCCAATGGAGAATCTTCGTCCCATGAATGTTATAGCCTATGGCAACATGGTACCAGGTGATTTTGAGGATGAATCAAACCACAGAGAACTTTTAGACTTGGAAGCTGCATCCAAAAACAAGCAGTTTGTTAACATGATGAATGAGAACTATTTTGGTGATAACATCTATGCAGACTATTTTACTCCTGATAGAGTTGAATCTTTTGATGCAGAAAAAGAATCTGGTTTCAAAGAAGGTCCTAAAGAAGGCATGTATGTTTGGGGTGAACCATCACAAAAAGAAAGCGAGTTCGTCCTTCCAAATTTTATtcacgagagctacaaaatagCAGAGAGTAATGGACCTGATTATTCAGGAGTTGTAAATGGGGGGCGTAGCATAAATTGTGAGGTGGATAGGTGTGAACGAGATAGTAAGGTGGATGTGTTAAGCGAGAGTAGGAGTGAGGGAGAAACTCCATTAAACATCTGCGCTGATGAGCGAATGCCACCTAGAGGGGAGCTTAGTGGTCAAGAAAGTAATGGCGATATGGAATCACCATGGAGTGGGATATACAATGAGGTTACTCCATCCGAGCCTTACGATTTGATGGCGCGCGAAAGTTGGGTGTCCGACGGTTCTGATGTGGATGCCAACGAGAAGAGAGATAACATAGAGGAGGAGATGCATTTCCCCAAGAGCAGACTTTACACCTGTTCTCAATGTGGCGCCAAGTATCCCACTTTGAAGGAGCTGCGAACTCATAAGACGCTTTCGCACTCATTGCCCACGTGTTCTAACGTGAAGACGACGTACAGTCGTCTGGTTACCGCACGGACTATCAAGAAGGAGGAGAAACCAGATGAGATAGTTTTAGAGAGAAATCTGTTAGCCTTGACTGACTCAAAAGAATCAATGGCAACTACTATGCTGCAAGTCTACGATGTGATTGCAGAAGCTAAACCAGCTATAGAAGGTCTTATTAAGCAGGAGGTTAAGCGTAGACGGAAGGATTTTGTTTGCCCTACGTGCAAGGTGGACCAGGAGACTGATACAGCTTTCCATGCCCATCTCAAGATACATCCCTTAGAGTGCCTCACTTGTGGAAAATGCTTCTTCAGGAGAGCGAACTTGGCTCTGCACATAAAAACCCATTTGGGAATCAAGAACTTTAAATGCGATGTGTGCGAGAAACGTTTCGTGACGCGGCAGAAGCTGGCGGAGCACCACAACGTGCACACAGGCCGCTCGCCCGTCAAGTGCACCGTTTGCGACGACACCTTCCGCCGCTACTCCAACATGGTGCAGCACAGAGACCGCCATCATTTCCAAAAGAGGGCAAAAGTCCGCGACTACGTGTGCCACTGTGGGGCGGTGTTCCATTCGAGGGCAAAGCTCCTCTGGCACAAGGAAACGCACGAGGAGAAGCCAAAGTCGTGTCTGTACTGCAGTGACAAGTTTATTCACGCATCCTCGCTCACGAGACACGTGCGTCGCGCACACAACGAATACTACCTCTCCGAGAAGTTGAAGGGAAAAGTGGAGAACGTGCCTTGTCCTATATGCAAGCAGATGTACCTGCGCACGAACCTACGCGCCCACCTTCTAACCCACAGCGGCAAGAAGCCGTACCCGTGCATCATATGCAACAAGTCGTTCACAACGAAGTGGAACCTCAAGCTGCACCGCTGGACCCACATGAGCCGCTCGGCCAAGCCGTTCAAGTGTCACCTGTGTAAAGGTGCCTTCATACGTCACACCGAATACATATCACACATGAACTCGCACAAGTCCCTGCGGCCGTACACCTGCAACTACTGCGGCTGTCAGTTCATCAGGAAGTACAACTGTCAACGGCACGTCAGGGAGCACGAGATGGCGAAGAAATACGTGTGCAAAGTGCCAGAGTGCGGGAAGTCGTTTCACAGGAGTTACTATCTGTCCGAACATATGAAAGTGCATAGCGGGGCGAGGCCCTTCTCGTGTAATATATGCGGTAAGACATCAAGCAATAAGTCAAATCATAATAAACACGTGAAGATTCACCATGCGAGGGAGCCGGTGGCCACGGAAGCGTAG
- Protein Sequence
- MDQRVQCPVCTLYLHSGMTLESHLDTHPKDQVIKALCSLSTKSSSYGSRTPTPSHSERSYRSRSRTPAADDNMRWMGTHRTSDSDRYWRRTPSRNKSTPMSSISVSRNVTPDIRIGEINFENTTINHGDQYPDPSYAMKSDKTQQTYIPNVTVSDFDHQYPYYTEQTEDREIKYSRSTDYNSMNNSSNVFTYNMPPMGPVPNLKPPTSSAPTILPPKKNNDVVKLLSKPDLVKLLPKSNNILFKTNMSGVQYLAPGVNVVMPTTPTFVQKNVQNNMIMSGNVPPAQILDTKAVAQPIAANQYNQMGQGTFSPGTTVVTQNSQIIYREMVHNIDGKPFISTMPTVLGRHDNAPNVAQSSSMYQNVMVVDQFGNTSCMYAGPQQILQKPCNASVYTENTSLLPNSSSDKLGPNIVNDGNKTLIIEVGPIVSPAAVTVCDASTSASLPLPSDTEDINKKEIEKTELKSESAGINKGLKILSNIKVEVPVQHNKSMLNTVMDLTGTNDQEYPDRSITPEKILPDLDDNNQSYSDECTQPSIASGDSLVSNAFSVIKNVGNPPSYKDSPSKSSIVGSKIETEFSDSCPVPDLICNEKPSISPCSELSEHGDNSTDHASLSPKPDCSRSNQNNIDSNIGDRKFSHKPFRNNALRLNNIYVKKHKKILQIKNSKASLTVNTSNKTEMEPMASSSICRTPENFSINKIHHTDRTEGKSNTLQTVSIEKLRDNDQSEFDADTEEQSMDIEPMAPSSLNDSNQYSSNVKVQVKEEVNTSNEGGYSNQDRLERNMTPMENLRPMNVIAYGNMVPGDFEDESNHRELLDLEAASKNKQFVNMMNENYFGDNIYADYFTPDRVESFDAEKESGFKEGPKEGMYVWGEPSQKESEFVLPNFIHESYKIAESNGPDYSGVVNGGRSINCEVDRCERDSKVDVLSESRSEGETPLNICADERMPPRGELSGQESNGDMESPWSGIYNEVTPSEPYDLMARESWVSDGSDVDANEKRDNIEEEMHFPKSRLYTCSQCGAKYPTLKELRTHKTLSHSLPTCSNVKTTYSRLVTARTIKKEEKPDEIVLERNLLALTDSKESMATTMLQVYDVIAEAKPAIEGLIKQEVKRRRKDFVCPTCKVDQETDTAFHAHLKIHPLECLTCGKCFFRRANLALHIKTHLGIKNFKCDVCEKRFVTRQKLAEHHNVHTGRSPVKCTVCDDTFRRYSNMVQHRDRHHFQKRAKVRDYVCHCGAVFHSRAKLLWHKETHEEKPKSCLYCSDKFIHASSLTRHVRRAHNEYYLSEKLKGKVENVPCPICKQMYLRTNLRAHLLTHSGKKPYPCIICNKSFTTKWNLKLHRWTHMSRSAKPFKCHLCKGAFIRHTEYISHMNSHKSLRPYTCNYCGCQFIRKYNCQRHVREHEMAKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFSCNICGKTSSNKSNHNKHVKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01402921; iTF_00204587; iTF_01337963; iTF_00197625; iTF_01154500; iTF_01494559; iTF_01115937; iTF_00249933; iTF_01496016;
- 90% Identity
- -
- 80% Identity
- -