Basic Information

Insect: Luehdorfia chinensis
Gene Symbol: -
Assembly: GCA_029286615.1
Location: JAGSMQ010000270.1:567810-585074[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.025 2.5 9.4 3.1 1 23 302 324 302 324 0.96

2 12 0.00023 0.023 15.8 2.7 2 23 332 353 331 353 0.95

3 12 0.043 4.3 8.6 0.5 1 23 357 379 357 379 0.97

4 12 0.00095 0.095 13.8 0.9 1 23 384 407 384 407 0.98

5 12 0.012 1.2 10.4 0.1 1 23 411 434 411 434 0.94

6 12 0.026 2.6 9.3 0.1 2 21 452 471 452 476 0.92

7 12 7e-05 0.0071 17.4 1.4 3 23 486 507 486 507 0.98

8 12 0.14 14 7.0 0.5 2 23 527 549 526 549 0.96

9 12 7.9e-06 0.00079 20.4 0.5 1 23 560 582 560 582 0.98

10 12 3.8e-06 0.00038 21.4 1.3 1 23 588 610 588 610 0.99

11 12 6.6 6.7e+02 1.8 6.0 1 23 616 638 616 638 0.97

12 12 1.2e-05 0.0013 19.8 0.2 1 23 644 667 644 667 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.025	2.5	9.4	3.1	1	23	302	324	302	324	0.96
2	12	0.00023	0.023	15.8	2.7	2	23	332	353	331	353	0.95
3	12	0.043	4.3	8.6	0.5	1	23	357	379	357	379	0.97
4	12	0.00095	0.095	13.8	0.9	1	23	384	407	384	407	0.98
5	12	0.012	1.2	10.4	0.1	1	23	411	434	411	434	0.94
6	12	0.026	2.6	9.3	0.1	2	21	452	471	452	476	0.92
7	12	7e-05	0.0071	17.4	1.4	3	23	486	507	486	507	0.98
8	12	0.14	14	7.0	0.5	2	23	527	549	526	549	0.96
9	12	7.9e-06	0.00079	20.4	0.5	1	23	560	582	560	582	0.98
10	12	3.8e-06	0.00038	21.4	1.3	1	23	588	610	588	610	0.99
11	12	6.6	6.7e+02	1.8	6.0	1	23	616	638	616	638	0.97
12	12	1.2e-05	0.0013	19.8	0.2	1	23	644	667	644	667	0.98

Sequence Information

Coding Sequence: ATGGGAGACGTTAAAGTGTGTAGAATATGTCTTGTCATGGACGTTAAATTGCATGATCTGCAATCTTATCCTCTAGGAACATACTTTGAACCAATTATAGGAATAAACCCCCTTAACGTGACAGATCTGCCACCGTTTGCCTGTTACGAATGTGCATCATTaataaagaagttttatttgttCCGCGAGAAATGCCTGAGAGGACAAGCTGCCCTATATGGTATACTTCATTCATCAGGAAAGATCACAATAGAAGATATAAGACAAATCGACAgacaatattttcatttgaaCTCTCATCTCTCTTTAAGCCATATGCTGGATGAAAAAGAGTTTTATATTAACCATGAAGAAGCTAAGAAGAATCACATAAAAGAGGAACCTTTTGATGATGAGGAAAGCGCCCGGGAATATGATGCAGAAGTAGAAAATATAAAGGAAGAAAGCAATTTCGAAGATGTCACATCCCCTGCAACATTATCAAGCGATGACAATGAACCCTTATCCCACCACAAAAGCACTAAagagaagaaaattaaaaagagacTGGTGAAAAAGAAAGTAAGGAAGATACAAAAGAAGCAGGAAGAGGAGGAAGATAATATATTGGAGAATAAACCTGAACAACACTTAAACTTTAttgaaACCACAGACAGCTCTATGCTGCCTCCAGAAATAACCgaagttataaaaagtaaaccgAAGAGAGGACGCCCGAGGAAAAGTGTGGAAACAACATTGGAGGCAAAAGAACGCAAGCCCAGAAGAACCAGAAATACGGGCGGTGTAGCTGATGATGAAATGGATCTGGAGGAATatgtcaaaataataaaattatcgGTAGAAGAGCAGATAGAAGAGATAACGAAGCGGCAGCACTCGTCCAACTATCTGAACGCGCCGTTCCAATGCAGTCTATGTTTCAAAGGCTTCATAGACACGCACGCTTGGAAACACCACGTGGGGAAACACGATCCAAGCGCCGGCGAGCTGGAGTGTTCCATCTGCAAGTTCCGCTTCAAAACCAAGCGGACGCTGCAGAAGCACGTCACCAACCACGAGAAGAAGTACGCGTGCAAGGCCTGCCCCTACGTCTCTAAGACCACGACACAAGCAAAGCAGCATCAGAGATGGCACAAAGGTGTCACGTACAAATGCCAGTACTGCGATGAAATATCTACCAAGTGGACATCGTACCTGAGCCACGTGCGCATCAAGCACCCGTCGCAGTTCATCTGCGGCGCCTGCGGCTACTCCTTCGTCAGCAAGCTGGGCCTCGCCATGCACCGCACCATGATGCACAAGGACCTCGCCGGGAAGTTGGAAGTTGGAGATAACAAAGAGGAGGGTCCGTACTGTGAGCAGTGTGACGTCAAGTTTATATCGATAGAAGCGTGGAAGAGGCACATGGTGACTTCAGTGAAGCACACTCAAAGCACGGATTTCAACACCGGATGTCGCGTGTGCGGAGAGACATTCAAGAGCGCGGAAGAACTGCGTCTTCATCACAGAAGGGAGCACGCACGCAAACGGCCCAAGAATTATGGCAAAAAACCTTCCAATCTCGCCTGGCCTACTGAATGCGAACATTGCTCGGAAGAGATAGCAAATGCTCGCGATTACTGGACTCATTTTCGTCGCGTGCATCCCGATAAAAATTATCCCATTCAGAAAAACTACATATGCGATATATGCGGCAAGAGCTTCAGGggCAACGCTTTCCTAGTGTACCACAAGCGCACGCACTCTGAGGAGCGCGCGTACAAGTGTGCGCAGTGCCCGAAGGCTTTCTTCAACCGCACCAACCTGCAGATGCACGAGCGCACGCACTCCGATGTGCGCCCCCACCCCTGCACCGTCTGCTGCAAGGCCTTCAAGTGCAAGGGCGCACTCGACCGGCACTCGCGCAGCCACACCGGGGTGAAGCCGTATGAGTGCGAGGTGTGCGGCAAGGCTTTCGCACAGTCCAACAGCCGAAAACTGCACGTGCGTACTGTGCATCTCAAGCAGCCCTCGCCGTACATCAGCCGCAGCCGCCTCGAGCGCCGCAACCGCCTCGCGCACCAGCTCTACTGA
Protein Sequence: MGDVKVCRICLVMDVKLHDLQSYPLGTYFEPIIGINPLNVTDLPPFACYECASLIKKFYLFREKCLRGQAALYGILHSSGKITIEDIRQIDRQYFHLNSHLSLSHMLDEKEFYINHEEAKKNHIKEEPFDDEESAREYDAEVENIKEESNFEDVTSPATLSSDDNEPLSHHKSTKEKKIKKRLVKKKVRKIQKKQEEEEDNILENKPEQHLNFIETTDSSMLPPEITEVIKSKPKRGRPRKSVETTLEAKERKPRRTRNTGGVADDEMDLEEYVKIIKLSVEEQIEEITKRQHSSNYLNAPFQCSLCFKGFIDTHAWKHHVGKHDPSAGELECSICKFRFKTKRTLQKHVTNHEKKYACKACPYVSKTTTQAKQHQRWHKGVTYKCQYCDEISTKWTSYLSHVRIKHPSQFICGACGYSFVSKLGLAMHRTMMHKDLAGKLEVGDNKEEGPYCEQCDVKFISIEAWKRHMVTSVKHTQSTDFNTGCRVCGETFKSAEELRLHHRREHARKRPKNYGKKPSNLAWPTECEHCSEEIANARDYWTHFRRVHPDKNYPIQKNYICDICGKSFRGNAFLVYHKRTHSEERAYKCAQCPKAFFNRTNLQMHERTHSDVRPHPCTVCCKAFKCKGALDRHSRSHTGVKPYECEVCGKAFAQSNSRKLHVRTVHLKQPSPYISRSRLERRNRLAHQLY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00197566;
90% Identity: -
80% Identity: -