Lchi010809.1
Basic Information
- Insect
- Luehdorfia chinensis
- Gene Symbol
- -
- Assembly
- GCA_029286615.1
- Location
- JAGSMQ010000092.1:454589-470413[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.014 1.4 10.2 0.5 1 23 266 289 266 289 0.95 2 12 1.3 1.3e+02 3.9 0.2 2 23 298 319 297 319 0.94 3 12 0.45 46 5.4 0.1 1 19 323 341 323 344 0.90 4 12 0.00026 0.026 15.6 4.4 1 23 351 374 351 374 0.91 5 12 0.0039 0.4 11.9 1.0 2 21 379 398 379 399 0.92 6 12 0.00013 0.013 16.5 0.6 2 23 412 433 411 433 0.94 7 12 0.00011 0.011 16.8 0.3 1 23 438 460 438 460 0.98 8 12 4.7e-05 0.0047 18.0 5.1 1 21 469 489 469 494 0.94 9 12 0.00036 0.036 15.2 1.8 1 23 502 525 502 525 0.94 10 12 0.0024 0.24 12.6 0.3 1 23 531 554 531 554 0.96 11 12 0.015 1.5 10.1 0.4 3 19 568 584 566 585 0.89 12 12 0.005 0.5 11.6 1.2 1 23 598 621 598 621 0.98
Sequence Information
- Coding Sequence
- atgaaggaaataaatattaatattgaaggCTATAATGTAAACGGAATATGCGTCGGCTGTCTAAATTATAATCGTAAAATGTTTTACCGGGAAGAagttaaagaattttttaaaatatgggCGAAAATAGAtgtTCCAGACGGCCTGACAATCCAGGTGTGCTGGGAATGCCTGGCTGGAGTGAGGTCTGCGGTTCGTTTTCGTACACAGATACTGGCTGCATTTGATGTATTAATTGATTATTCTCGCCAGCACACATTTCTCAACTCTCCTTATGATCTATCGAAATATGCTATGGGCCGTCTGTCCTGCACGGCGCTCCAAATGGAGCCCACGTTGATACCTCTGAAGAAAGAGGAACAGCCTGAAACGGACAGGGATTTGTACAAAATTGAAACggaaaacattaaatatgatGTGATCAAGCTTGACCCTCAGTTCGTAGCGACCTCCCCCATCGCACAATCTCCGAAACTGGAAGCCGGTACCGACGTCTTCATTGACTCCGACTACCACGAGGATATTCTGTCGCAAGATCAAGAAGCGTCTGACGATGACGTCCTTCTATCGAAGCTGAGGACGAAAAAGAAGAGGGGTAGAAAGACCAAGAAGGAGAGGAACAAGAGAAAGCTAAAAGATGATATGGAGCCAAAGGAAGAAGAACTGCCTCTTAAGCGTTCCAGGAAACTGAAGAACTTGCCAGAAGATTTAGTGGAGTTATACACGATGACGGAGGAGGAGATGTGGAGGATAAGGGCGGAGGACCTTGCGAGACAGGAGTTTGTGGACCTGAAGTACAAATGCCAGGACTGTGTGATCGGATTCAATACTGAAAAACTAATGAACTATCATCTGAATGGGAAGCATAACCCGAAAAGGGAGGACAACATGCAGTGTGACGTGTGCAAGGCATACTTCCTGACGCGGGAGAACGTGTCCGCACACCGAGCACTGCACCTCGCCGCCTACCGCTGCCGCGAGTGCGGAGCTGTCACCACTCTGAAGCGTGCAATATTGCGCCATGCGTGTGCGCGTAACGTTGCGACGTGTCACGCCTGCAGCACTTGCGGGAAGGAGTTCAGTACAAAATCGAAATTAACGTACCACCGAGGCGTGTGCCATCAGGAGCGACCGCAGTGCGATTGCTGTGGAAAGGTGTTTGCCAATAAGATGACATTGAAGTATCATTTAAAAATCCTACCGCAAAACAAACCAAAGGAGAAGCTGCACATACCGTGCAAAGGCTGTGATAAAGTGTTCCATTCAAAGAAGAGTTACAGAGCTCACGTGGTAATCCACAACGGGCTGACGTACCCGTGCCCGATCTGCGGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGCCACACGCGCAACCACCGCGAGCGGGCCGCCGGCGCGCTGCACGAGTGCCGCGACTGCGGCAAGACCTTCTCCAGCCGCGACTGCTACAACAACCACATGCGGCTCAGCAAGCGCCACGTGCCGGAGGACGCCTACGTGCACGCCTGCAGCTACTGCGGGAAGAAATTCGCGACAAAGTGGTGCATGGTGGACCATATAAACTGGGACCACTTGAAGCTCATTAAGTACCAGTGCAGCGTCTGCTTCAAGcctttcaaaaCAGCAAAAATCATGGTGGCACACATGAACAATATACACGAGGGCAAGAAGAACAAGGAACCGGAGGGAGAGCATCTCTGCGAGATATGCGGGAAGTCGTACAAGACGGTGAAAAGGCTGAAAGGGCACGTTTGGGCGATGCACACCAACCGGTCGGCTTCCAAGAGCTTCAAGTGTAAGCTGTGCCCGGCCACCTTCACCTGGCAGACCTCCATCTACAAGCACATGAAGATGATGCACGACAGCAACAAGCGGAGCAAGCAATCCCGACCGATACCAGTGAAGAAGCAAGAGGCCTACCCGGAAATCGACCTAGCGAACAGAATGCAATACTTCCAACAGAATTTGGCCAACAACTTGGTACAGAACATTGTCCAAGCTCAACCGGTTCCGatcaatattatacaaaatattagctAA
- Protein Sequence
- MKEININIEGYNVNGICVGCLNYNRKMFYREEVKEFFKIWAKIDVPDGLTIQVCWECLAGVRSAVRFRTQILAAFDVLIDYSRQHTFLNSPYDLSKYAMGRLSCTALQMEPTLIPLKKEEQPETDRDLYKIETENIKYDVIKLDPQFVATSPIAQSPKLEAGTDVFIDSDYHEDILSQDQEASDDDVLLSKLRTKKKRGRKTKKERNKRKLKDDMEPKEEELPLKRSRKLKNLPEDLVELYTMTEEEMWRIRAEDLARQEFVDLKYKCQDCVIGFNTEKLMNYHLNGKHNPKREDNMQCDVCKAYFLTRENVSAHRALHLAAYRCRECGAVTTLKRAILRHACARNVATCHACSTCGKEFSTKSKLTYHRGVCHQERPQCDCCGKVFANKMTLKYHLKILPQNKPKEKLHIPCKGCDKVFHSKKSYRAHVVIHNGLTYPCPICGKLFQWKRNLARHTRNHRERAAGALHECRDCGKTFSSRDCYNNHMRLSKRHVPEDAYVHACSYCGKKFATKWCMVDHINWDHLKLIKYQCSVCFKPFKTAKIMVAHMNNIHEGKKNKEPEGEHLCEICGKSYKTVKRLKGHVWAMHTNRSASKSFKCKLCPATFTWQTSIYKHMKMMHDSNKRSKQSRPIPVKKQEAYPEIDLANRMQYFQQNLANNLVQNIVQAQPVPINIIQNIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00197578; iTF_01402924;
- 90% Identity
- -
- 80% Identity
- -