Basic Information

Insect: Luehdorfia chinensis
Gene Symbol: -
Assembly: GCA_029286615.1
Location: JAGSMQ010000172.1:1254380-1263638[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0034 0.34 12.1 0.0 2 23 150 171 149 171 0.97

2 9 0.0018 0.18 12.9 2.5 1 23 177 200 177 200 0.94

3 9 7.8e-05 0.0078 17.3 0.8 1 23 207 229 207 229 0.98

4 9 4.1e-06 0.00041 21.3 2.0 1 23 235 257 235 257 0.99

5 9 5.7e-06 0.00057 20.8 0.3 1 23 263 285 263 285 0.97

6 9 0.0032 0.32 12.2 2.4 1 23 291 313 291 313 0.95

7 9 9.3e-06 0.00093 20.2 0.3 3 23 321 342 320 342 0.97

8 9 0.0032 0.32 12.2 0.7 2 23 348 366 347 366 0.86

9 9 0.011 1.2 10.4 0.6 1 23 372 395 372 395 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0034	0.34	12.1	0.0	2	23	150	171	149	171	0.97
2	9	0.0018	0.18	12.9	2.5	1	23	177	200	177	200	0.94
3	9	7.8e-05	0.0078	17.3	0.8	1	23	207	229	207	229	0.98
4	9	4.1e-06	0.00041	21.3	2.0	1	23	235	257	235	257	0.99
5	9	5.7e-06	0.00057	20.8	0.3	1	23	263	285	263	285	0.97
6	9	0.0032	0.32	12.2	2.4	1	23	291	313	291	313	0.95
7	9	9.3e-06	0.00093	20.2	0.3	3	23	321	342	320	342	0.97
8	9	0.0032	0.32	12.2	0.7	2	23	348	366	347	366	0.86
9	9	0.011	1.2	10.4	0.6	1	23	372	395	372	395	0.90

Sequence Information

Coding Sequence: ATGAATTTGAATATATGTAGATTATGTTTAGATAAATCCGCCACTGTCTCTGTGTTTGGTGAAAAAGATGATGTTCAATATTGTGCTAAAATAATGCGATTCGTTAATGTAGACATAAGAGAAGGAGACGGTTTACCCACCATGATGTGTGGTAACTGTGTACATGATCTTAGAGTATCTTATGAGTTTGTGCAAAAATGTGAAGCATCCGATAAAGCATTGCGCTCCTTGTCCGCGGACTTTTTCGAAGAAATTCAGCCAAAAATCGAAATAGATATTAAACTAGAAGATATCAAAAGGGAACTGGATGATCAAGATAATTATGACCATTTTTTGTCAGACTCAGTGTCTGATAAGGTTCAGAATACACTTGAAAAGAAAGGTAAACGAAATGAGCGCAAAAAAAATGTTCggaaaaaagttaaaagaggCAAAGTGGGCCCGATACAGTGCGTTATTTGTGGGCTTTTGGCTCCCAGCCCATCAGCAATGCAAACTCACATGCGTACTCATACAGGTGAAAAGCCATTCTCATGCTCCTTTTGCAACTCCAAGTTCCCTACGAAAGGCTCGTTGAAAAGACACAATGACACTTATCATTccgaaagagaaagaaaattcACATGTGAAACCTGCGGCAATAGCTTTTTTAGAAAGAATGACATAATAATGCACATGAGGGTTCACTCTGATGACAAACCATATGTATGTCCATTTTGTTCCAAAAGGTTCCGGCAAGTAACATCGCTCATCCGTCACAAGAGAACACACACCGGTGAAAAACCCTTCGCCTGTCCAATATGCGACAAGAAGTTTGCCGATAAGAATCTTGTCCGTAAACACCAAAGTGTGCATAGTGATGAGAAAAATTTCAGTTGTCACTTGTGCAACAAATCTATGAAATCTAAGACTGCATTAACAACTCACTTAGGCTTACATACAAATGAAAAACAGAACATTTGCAGTTTTTGTGGCATGGCATTCTCCATGAAAGGCAACTTACAGACTCATATTCGGAGAGTTCATTCGGAGAGGTCTGGACAGTGTACCATTTGCTTGAAGACTTTTTCGGACCTAGAGGTTCATATGCGTAAGCACACCGGGGAGAAACCTTTTATATGCGCATTATGCAATCAAGCATTTGCAGCAAAACGTAGTCTTGCACACCACATGGTGTTCAAACATGAAAACGCCGCAAAGTTCAAATGTTCAATAGGTAATGTCGAACCTCTCACTCTCACGCCAATTAGTCGAGAGGTGATACGAGAGGCCGTTAGCCCGCGACCGGCCGCCGCGACGCACGTCTCGCTCCGTCAATCGTCGATTGTCCTACAACCGTGCCAGTCATTGCTGAAAGAAGACCCTCTATCGAGGATACAAAGGGAAATAATAGAAGTTACAGAAAGAGAGCGTGAGTTCAAAGAGGGACACTTTAGAATGAATAGACTCTTATCCGAGTCTACCATAGATGTAACCAAACAAAATGGCCATGTGAACGGAGATACGACGGAAATTCACCAAAAGACACTAAATAGAGCAGTTTCGACGTCTCATTTGCTAGGACCTATTGCACCATCTCCACCTACCACTCAAACCAGCTTAAACACAAATGGATACACACGTCGGTTCACGCCGCAAAAGGGCACTCAAGGCATCATGCAGCGATTTATTGCTAGTAAAGGAAAACTCCCTGTAACGTCTCCTGCATCGCCGACGTCGCCTGTAACATTATCGCCGCCCTTAGCCCTAACCCCAGTAGCTGTCGCGCCAATAGTAGTGGCCCCGACTGCGATCACGCGCACTCCAGAAGGAAAGCCCATCCGCAAAGGGTACGTACCTGTTGAAGAGAAAATTCAAAAGGAACTTAAAGAGATGAAAAATAGAGAACACGAactgaagaaaatgagaaagaAACAGAAGCCCTTTGATATCGAGCTCAGCGATAATGAAACAACTTCGGAGTCGGATGAAGAGGACATACCGTTACCGGGAAAATTGAAAGCTACGAAATCAATAGGGGAGTTGTATGAGGCCTTGAATGAAGAGGTGAGGTCGCCGTCGCCGAGAATTAGCTCTGGAAACGATTCCATGGGCAGTCTAAAGCCCGCGAAATCCCTAGCGGAACTTTGTGAGCTGGCACCCGGGCAGGAATTCCTAGCGCCGAGCTCAACGCGTCTCATAGCGCAGTGGGAGTCGATGATACAACAGAAGCAGGAGGCCGGCGCTGCTTAG
Protein Sequence: MNLNICRLCLDKSATVSVFGEKDDVQYCAKIMRFVNVDIREGDGLPTMMCGNCVHDLRVSYEFVQKCEASDKALRSLSADFFEEIQPKIEIDIKLEDIKRELDDQDNYDHFLSDSVSDKVQNTLEKKGKRNERKKNVRKKVKRGKVGPIQCVICGLLAPSPSAMQTHMRTHTGEKPFSCSFCNSKFPTKGSLKRHNDTYHSERERKFTCETCGNSFFRKNDIIMHMRVHSDDKPYVCPFCSKRFRQVTSLIRHKRTHTGEKPFACPICDKKFADKNLVRKHQSVHSDEKNFSCHLCNKSMKSKTALTTHLGLHTNEKQNICSFCGMAFSMKGNLQTHIRRVHSERSGQCTICLKTFSDLEVHMRKHTGEKPFICALCNQAFAAKRSLAHHMVFKHENAAKFKCSIGNVEPLTLTPISREVIREAVSPRPAAATHVSLRQSSIVLQPCQSLLKEDPLSRIQREIIEVTEREREFKEGHFRMNRLLSESTIDVTKQNGHVNGDTTEIHQKTLNRAVSTSHLLGPIAPSPPTTQTSLNTNGYTRRFTPQKGTQGIMQRFIASKGKLPVTSPASPTSPVTLSPPLALTPVAVAPIVVAPTAITRTPEGKPIRKGYVPVEEKIQKELKEMKNREHELKKMRKKQKPFDIELSDNETTSESDEEDIPLPGKLKATKSIGELYEALNEEVRSPSPRISSGNDSMGSLKPAKSLAELCELAPGQEFLAPSSTRLIAQWESMIQQKQEAGAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01337913;
90% Identity: -
80% Identity: -