Lchi020414.3
Basic Information
- Insect
- Luehdorfia chinensis
- Gene Symbol
- -
- Assembly
- GCA_029286615.1
- Location
- JAGSMQ010000274.1:558109-573769[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 3.5e-05 0.0035 18.3 2.8 1 23 234 256 234 256 0.99 2 9 0.0037 0.38 12.0 1.0 1 23 317 340 317 340 0.95 3 9 0.0005 0.051 14.7 0.1 2 23 345 367 345 367 0.96 4 9 0.021 2.2 9.6 0.1 2 20 380 398 379 400 0.95 5 9 0.0021 0.21 12.8 0.0 3 23 413 433 412 433 0.96 6 9 1.5 1.5e+02 3.8 1.5 3 23 441 462 439 462 0.91 7 9 4.8 4.9e+02 2.2 0.8 2 10 482 490 481 493 0.86 8 9 9.2 9.2e+02 1.3 1.4 2 10 516 524 516 527 0.85 9 9 4.8 4.9e+02 2.2 0.8 2 10 612 620 611 623 0.86
Sequence Information
- Coding Sequence
- atggggGAACTGTTAGCGTGTCGCATATGTCTATCTACAgacataaagttatttaatttatttaaatacagatTGGCGGAACCGTTTGAAATTCTAACTGGAATACaaataacAGAATGTGATGGTCTTCCACATCAAATATGCAGTTACTGCAGTGCCTTGCTGCTCAAATCTGTCTCATTCAAGGAGAAATGCTGCAATTCACAAGATTTTCTCAAGTATTCTTTACAGGAACAAAGAGggCTTTCCCCAGACTATCTGCAATCAGTCAAAAGAGAACTAAATCTGGCATTACCCTACACAACCATAACCACAATAGCTTCTATAGATGATAATTCAGATGCATCTATAAAAGTGGAAGAGATAATAGAAGCAGAAGACCCAGCGAAAGAATTCATCAAAATCGAAGAAATTCCCGATGAATTACCAAAGAAGAAGTCCAAGAAGCCATATAGGAGgagaaacaaagaaaaagaGAAGCAAGCAGAACTTGATGATGTAACCGTCAAATTAGAAAATGATATTGAATCATTAGattttgataatgatgattttgaTCACACAACTCCGCTGGATGACAGCGACACTCAAGAAGATGTGGAGGAACTGAAAGATATGGAAATCATTATACTAACCAAGCAGCAACAAATAGATGAGGTTCAGGCGCGGAAGACATCTTTCAATTACACAAATTCGTTTTACAAATGTGATAAATGCTACAAGGGTTTTATAACGGATTCCACGTTTAAAAATCACATGATGCGCCATGATCCGAGGAGCGGCGAGTTCGCTTGCGACGTGTGCTGGGCGCGCTGGCCGGAGGCGCGCTCGCTGCGAGCGCACGCCGTGACGTCACACGAGCGCAAGTTCGTCTGCAAGCTCTGCGACCACGTCTCGCGATCCAGTCACCGAGCAAAGGAGCACTGCAAATGGCACACCGGCTTTACGTTCGTCTGCAAGATATGCGGGGCTTCATTCGCGAAGTCAACAAGCCACCTCACACACATACGGCTGCAGCATCCATCGAACAACTCCTGCGAGGTCTGCGGGGAGTCTTTCATTGGGGAGTACGGACTGAGGATGCACAAGAGGAGAGCACATAAGGATTTGGAGAATCAAGACGCCAAAGTGTTCTCGCAGTGTGAGAACTGTTCAGCCCTGTTCAACAACTTGGACGCTCTGAAGAGGCATCTAGAAGATGCAAAGGACAACGTCTGCGATCCTGACGTGAAAGCGTGCTCAGAATGCGGCGAAGGGTTCCCGTCTGATGATGCACTGAAGGAGCACGTGAAAGATCACCAGAAAGACGAGACGGTTCACTGCCAGGCTTGCGAGCGAACATTCGCGACGCCGCGCTCGCACGCCGTGCACTACCAGCGCGTGCACCTCGGCGTGCGGCCGCAGCACCGCCGCCCCGGCGCGCGCCGCCCCGCCGACAGCGTCGTGTGCGAGATGTGCGGCAAGAAGTGCATCGTGAGTCCCCCGCCCCGCCCCGACCCCCCACCTAACCGCACCGCCGCCCCGGCGCGCGCCCCCGCGACAGCGTCGTGCGAGATGTGCGGCAAGAAGTGCATCGTGAGTCCCCGCCCTGCCCGACCCCCACCTCACCGCACCGCCGCCCCGGCGCGCGCCGCCCCGCCGACAGCGTCGTGTGCGAGATTCCCCCGCCCCGCCCCGACCCGCACCTCACCGCACCGCCGCCCCGGCGCGGGCCGCCCGCCGACAGGCGTCGTGCGAGATGTGCGGCAAGAAGTGCATCGTGAGTCCCCGCCCCGCCCCCGACCGCACCCCGCACCGCCGCCCCGGCGCGGGCCGCTCGCCGCCGACAGCGTCGTGTGCGAGATGTGCGGCAAGAAGTGCATCGTGAGTCCCCGCCCGCCCGACCCCCACCCTAACCGCACCGCCGCCCggcgcgcgccgcccgccgACAGCGTCGTGTCGAGATGTGCGGCAAGAAGTGCATCGTGA
- Protein Sequence
- MGELLACRICLSTDIKLFNLFKYRLAEPFEILTGIQITECDGLPHQICSYCSALLLKSVSFKEKCCNSQDFLKYSLQEQRGLSPDYLQSVKRELNLALPYTTITTIASIDDNSDASIKVEEIIEAEDPAKEFIKIEEIPDELPKKKSKKPYRRRNKEKEKQAELDDVTVKLENDIESLDFDNDDFDHTTPLDDSDTQEDVEELKDMEIIILTKQQQIDEVQARKTSFNYTNSFYKCDKCYKGFITDSTFKNHMMRHDPRSGEFACDVCWARWPEARSLRAHAVTSHERKFVCKLCDHVSRSSHRAKEHCKWHTGFTFVCKICGASFAKSTSHLTHIRLQHPSNNSCEVCGESFIGEYGLRMHKRRAHKDLENQDAKVFSQCENCSALFNNLDALKRHLEDAKDNVCDPDVKACSECGEGFPSDDALKEHVKDHQKDETVHCQACERTFATPRSHAVHYQRVHLGVRPQHRRPGARRPADSVVCEMCGKKCIVSPPPRPDPPPNRTAAPARAPATASCEMCGKKCIVSPRPARPPPHRTAAPARAAPPTASCARFPRPAPTRTSPHRRPGAGRPPTGVVRDVRQEVHRESPPRPRPHPAPPPRRGPLAADSVVCEMCGKKCIVSPRPPDPHPNRTAARRAPPADSVVSRCAARSAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -