Lchi013852.1
Basic Information
- Insect
- Luehdorfia chinensis
- Gene Symbol
- -
- Assembly
- GCA_029286615.1
- Location
- JAGSMQ010000137.1:1103879-1123482[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.081 8.1 7.8 1.4 1 20 6 26 6 28 0.89 2 13 4.7 4.8e+02 2.2 0.0 2 20 34 52 33 54 0.86 3 13 0.077 7.8 7.8 0.3 1 12 207 218 207 227 0.86 4 13 6e-06 0.0006 20.8 0.4 1 23 343 365 343 365 0.98 5 13 0.0014 0.14 13.3 3.3 1 23 379 401 379 401 0.98 6 13 4.7 4.8e+02 2.2 0.2 1 8 426 433 426 447 0.85 7 13 5.7e-05 0.0057 17.7 2.7 3 23 455 475 453 475 0.96 8 13 0.00085 0.086 14.0 3.1 1 23 491 513 491 513 0.98 9 13 1e-06 0.0001 23.2 3.7 1 23 519 541 519 541 0.98 10 13 0.0023 0.23 12.7 6.2 1 23 547 569 547 569 0.97 11 13 1.5e-06 0.00015 22.7 0.4 1 23 575 597 575 597 0.98 12 13 0.0043 0.43 11.8 0.1 1 23 601 623 601 623 0.97 13 13 0.00015 0.015 16.3 0.1 1 23 631 654 631 654 0.96
Sequence Information
- Coding Sequence
- ATGGGAGACGTAATGTTCTATTGTCCTCTATGTTGTAAAGAAACCTTTAATTCTAAACACGAACTTATAGAACATTTAGCGAATGTTTTGTCAAATTTAGTATGTCCTATTTGTAATGATAAATGGTCCACTTTGGTCCATCTCATAGAACATTTGAGTCTTGATAATTGTCACCAAATAAACACTGATCATATCTGTAAGGAAGAAACAGTTGCTGCAGATAATGAAAAGAGTAGTGTAGATTTAAACATTGAAAATAAACAGTCTGATGgtaAAGAGACACAGGATGGACTTTTAGAAGACCAATtgtctaataatataataaaattacataatattgaagATAGTACACAAGTCAATAAGATGTATGTAGAGCTGTTAAGTGAACAACTATTGCAGCCATGCCTTCCGACACAAGAGTTGAAGcttgagaaagaaagtgcagATAGGTATGTGATACTGACTGATGAAGATTCTATATTAAACACTGGCAGTACAGtggtaacaaaacaaaataatgatggAACTATATCTATGACTGTCAAAGAACCAAAATTAGAAAATGTAGGTCGGATAAATTCTACAGAAAATGAGTCAGAAGATAACCAAGATGAGAATTACACCTGCAATACATGTGGAGTATCTTTTTCTTCAGTTCTTGAACACATTCAAAACTACCATAGTGATCAAGATGTTGTGGTGGAGGAACCAATTGAGGATGGTACCAATGAGGCTTCATTAGAATATGAAACTGTATGTAATGATGAATCCATTGTCATTGACAAACAGGCTCCAAGGCGTATGATAACAGACACTGGTGATATTATTGAGGCACCCATTATACTACAAACTTGCTCTGATGTCCAACAACAATCTTTAGATAAAAATGGCCCATTCCACAAGGTTGTGGCAAAGGAAATGCAAACAACATTAGGCAACAAGATTAAAGTTTATAATTGTATGTCATGCAATATTTTTGTCTCATCTTTGCCTGAATTTAAAGCTCACCCCTGTAAAACATtgaAATATCCGTGCCCACATTGTCCGGTGGCGTATGAGAATCCAAAATCACTTTGCGCACATATGAAAGTGCATAAAACAAAATCAGATATCAATATAGATCCTATAGTCTCGTTTATATGCGAGATTTGTTGTACAGTCTTTTCAACAAGTAAATCATTGAAACTTCACAAACGTATGCATGATCCAATCAAGTCACGACCCATCGAACCACCTGTGGAAACAACCGAGGGAAACGTAGCCAGCGATGATAAATACACGTGCCCGATATGTTTCAAACTAATACCGGAGGACTACCGCGCCATTCACCAGAACTCGCATAGCAATAGTAACAAAATGAACTGCGACATTTGCAATAAGAAGTTCCACTCGAAGGAGTATCTGAAGATGCATATGAGTGTACATAATATGGATAAgGTAATTGTTGGTAAACAAGACAAATCTCTGCCATACACGTGTTCATTTTGTAACAGAAAATTTGCAAGGCCACATGAAAAAGTCAAACACGAAAGGATACATACAGGTGAAAAGCCCCATACATGTGAGATCTGTGGTAAGGCGTTCCGTGTCTCATACTGCCTCACTCTTCATATGCGCACACATACGGGCGCCCGTCCATACGCCTGCCCGCATTGTAATAAGAGGTTCAAAGCGCACAGCGTCTACAACCATCATCTTCTCACGCACTCCGAAGTGCGTGCATACAAATGCCCGTACTGTCCCAAAGCATTCAAAACATCCGTGCAACTCGCTGGCCATAAGAACTCACATACGAAACCCTTTTCTTGCCTGCAGTGTAACAGACCATTCGCGTCGTTGTACGCGGTGCGTGTGCACACGGAGATCcattcgcggcagaataaccttaAGTTCTCCTGCTCGCTGTGTGGCGCAAGCTACGCGAGGGCCTTCGCGCTGAAGGATCACATCAAACAGGTGCATAAAGATGCCTCCCCGGACAATTTGAGACGACTGACGATTCGTGAGGGCGAGGGCGAGGGCGACGTAGAGGAAGTGCATTGTCTCAATAAAGAGTTATCTGACGAGATAACCGAATTGGAATCAAATTCGAACGAGATGATTATTCCTTAA
- Protein Sequence
- MGDVMFYCPLCCKETFNSKHELIEHLANVLSNLVCPICNDKWSTLVHLIEHLSLDNCHQINTDHICKEETVAADNEKSSVDLNIENKQSDGKETQDGLLEDQLSNNIIKLHNIEDSTQVNKMYVELLSEQLLQPCLPTQELKLEKESADRYVILTDEDSILNTGSTVVTKQNNDGTISMTVKEPKLENVGRINSTENESEDNQDENYTCNTCGVSFSSVLEHIQNYHSDQDVVVEEPIEDGTNEASLEYETVCNDESIVIDKQAPRRMITDTGDIIEAPIILQTCSDVQQQSLDKNGPFHKVVAKEMQTTLGNKIKVYNCMSCNIFVSSLPEFKAHPCKTLKYPCPHCPVAYENPKSLCAHMKVHKTKSDINIDPIVSFICEICCTVFSTSKSLKLHKRMHDPIKSRPIEPPVETTEGNVASDDKYTCPICFKLIPEDYRAIHQNSHSNSNKMNCDICNKKFHSKEYLKMHMSVHNMDKVIVGKQDKSLPYTCSFCNRKFARPHEKVKHERIHTGEKPHTCEICGKAFRVSYCLTLHMRTHTGARPYACPHCNKRFKAHSVYNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCLQCNRPFASLYAVRVHTEIHSRQNNLKFSCSLCGASYARAFALKDHIKQVHKDASPDNLRRLTIREGEGEGDVEEVHCLNKELSDEITELESNSNEMIIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -