Basic Information

Insect: Luehdorfia chinensis
Gene Symbol: -
Assembly: GCA_029286615.1
Location: JAGSMQ010000229.1:534298-553442[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.0074 0.74 11.1 1.3 1 23 70 93 70 93 0.96

2 19 0.0044 0.44 11.8 3.2 1 23 100 122 100 122 0.95

3 19 0.00042 0.042 15.0 3.5 2 23 129 150 128 150 0.97

4 19 6.8e-05 0.0068 17.5 0.4 1 23 156 178 156 178 0.97

5 19 0.012 1.2 10.3 0.5 1 23 187 209 187 209 0.95

6 19 0.016 1.6 10.0 0.1 6 23 219 236 214 236 0.93

7 19 0.0022 0.22 12.7 7.2 1 23 242 264 242 264 0.98

8 19 3e-08 3e-06 28.0 0.4 1 23 270 292 270 292 0.99

9 19 4.3e-06 0.00044 21.2 2.1 1 23 298 320 298 320 0.99

10 19 0.0051 0.51 11.6 0.2 1 23 326 347 326 347 0.90

11 19 0.038 3.8 8.8 2.6 1 23 353 375 353 375 0.92

12 19 0.37 37 5.7 0.0 1 14 399 412 399 416 0.83

13 19 0.36 37 5.7 0.4 1 12 1058 1069 1058 1070 0.92

14 19 0.34 34 5.8 0.1 1 14 1174 1187 1174 1190 0.83

15 19 0.038 3.8 8.8 2.6 1 23 1231 1253 1231 1253 0.92

16 19 8.1 8.1e+02 1.5 0.8 6 23 1341 1358 1338 1358 0.93

17 19 0.038 3.8 8.8 2.6 1 23 1380 1402 1380 1402 0.92

18 19 0.012 1.2 10.4 0.2 1 20 1554 1573 1554 1573 0.93

19 19 0.25 25 6.2 0.1 1 16 1737 1752 1737 1754 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.0074	0.74	11.1	1.3	1	23	70	93	70	93	0.96
2	19	0.0044	0.44	11.8	3.2	1	23	100	122	100	122	0.95
3	19	0.00042	0.042	15.0	3.5	2	23	129	150	128	150	0.97
4	19	6.8e-05	0.0068	17.5	0.4	1	23	156	178	156	178	0.97
5	19	0.012	1.2	10.3	0.5	1	23	187	209	187	209	0.95
6	19	0.016	1.6	10.0	0.1	6	23	219	236	214	236	0.93
7	19	0.0022	0.22	12.7	7.2	1	23	242	264	242	264	0.98
8	19	3e-08	3e-06	28.0	0.4	1	23	270	292	270	292	0.99
9	19	4.3e-06	0.00044	21.2	2.1	1	23	298	320	298	320	0.99
10	19	0.0051	0.51	11.6	0.2	1	23	326	347	326	347	0.90
11	19	0.038	3.8	8.8	2.6	1	23	353	375	353	375	0.92
12	19	0.37	37	5.7	0.0	1	14	399	412	399	416	0.83
13	19	0.36	37	5.7	0.4	1	12	1058	1069	1058	1070	0.92
14	19	0.34	34	5.8	0.1	1	14	1174	1187	1174	1190	0.83
15	19	0.038	3.8	8.8	2.6	1	23	1231	1253	1231	1253	0.92
16	19	8.1	8.1e+02	1.5	0.8	6	23	1341	1358	1338	1358	0.93
17	19	0.038	3.8	8.8	2.6	1	23	1380	1402	1380	1402	0.92
18	19	0.012	1.2	10.4	0.2	1	20	1554	1573	1554	1573	0.93
19	19	0.25	25	6.2	0.1	1	16	1737	1752	1737	1754	0.83

Sequence Information

Coding Sequence: atgtacggAATTGTTATAGATTTACAATATTTGGATGACAGTAGCAGATTTGATGAAGATCCAGAGAATATTaccttaaacttaataaaaaatgaagaaCAGGCTAGACAgaaaAATACAAACATCTCTCTCACTGATTCAAAGACATTTCTTAAAAAGATCTCatctaaaagaaaacataaaacatGTAGTGAAAGGAAGAAATCTTATTTATGTACACTGTGTTCTAAGAAATTTCTTAAAGCAAAGACTTTGAAAGCTCACATTAAAACCGAGCATGGCTCAGAGAAACGTCCACACTCCTGCAATCAGTGTAAGGAGTCCTTCAATTCCGAGCACGATTTGCAATTACATACAGCTTTACACGCCAGAGGTGATGTGTGGACTTGCACTGAATGCCACAAGAAGTTTGAAGCTCGGAGCAGACTGCGCCGGCATATCCAGCGGCATATGCAGAGCAAGCGGCATACGTGCGACGCGTGCGGCAAGGCATTCGCCGAGCTGTACGCGCTGCGTCGACACACGCGAGTGCACACCGGCGAGCAGCTCGACAAGCGCCACGCCTGCCACCTCTGCGAGAAGAGGTACAGCTCGGGCGCGGCGCTGGCGGCGCACTTGGGGCGGCACAGCGGCGCGCGCCCTTGCGTGTGCGCTTGCGGCAAGGCCTTCCCCTCGCCGCGCCTGCTGGCCTCGCACCGCCTCGTGCACTCCGATCGCAAACCTTACGCCTGCCAGTACTGCGAGAAAACATTCCGCCACGAGTCGACGCGAAACACACATCACCGCACACACACGGGCGAGAAGCCTTACGTTTGCGCCAACTGCGGGAAGACCTTCATCCAGCGCTCCAATCTCATACTGCATATGAGAACACACACCGGAGAGAGGCCGTATTCCTGTAAGATGTGCGATCGCAAGTTTACATCAGGCTCCTCGTTGAAGAACCATGTTAGGACTCACACAGGGGACAAACCGTATTCCTGTCCAGTTTGCGATAAGAGGTTCGCACGCGTGGACATGCGCACGCACATGGCGCTGCACACGGGCGAGCGGCCGCACGCCTGCGCCGTCTGCGACAAACGCTTCACCAGCGCCTGGCGCCTGCGTGAGCACTGCCGCCTGCACTCGGGTGcgtcacacacgcacgcacggacacacacgcacacgcatgACATACTCACACTCACACGGCCGCACGCCTGCGCCGTCTGCGACAAACGCTTCACCAGCGCCTGGCGCCTGCACATCTCACTCACGGCCGCACGCCTGCGCCGTCTGCGACAAACGCTTCACCAGCGCCTGGCGCCTGCTGAGCACTGCCGCCTGCACTCGGGTGCGTCACACGCCGCACTGACACACGCACGCATAGACATACTCACACTCAACGGCCGCACGCCTGCGCCGTCTGCGACAAACCTTCTGCAGCGCCTTGGCGCCTGCGCGGGCACTGCCGCCTGCACTCGGACATACTCACACTCCACCGGCCGCACGCCTGCGCCGTCTGCGACTAGCGCTTCACCAGCGCCTGGCGCCTGCGCGAGCACCGCCGCCTGCACTCGGTGcgtcacacacgcacgcactgacacacacgcacacgcacagacactcacactcacacggCCGAACGCCTGCGCCGTCTGCGCAGCGCTTCACCAGCGCCTGGCGCCTGCGCGAGCACTGCCGCTCACCCGCCTGGCGCCTGCGCGAGCACCCGCCTGCACTCAGGTGCGTCCACACGCACGCACTGCCACACGCACGCATGACATACTCACACCACGGCCGCACGCCTGCGCCGTCTGCGACACGCTTCACCAGCGCCTGGCGCCTGCGCGAACCGCCGCCTGCACTCGCGCCTGGCGCCCCGCGGGCACTACGCGCCCCTGGCCCACTCCGGGTGCGTCACGACACACCCTGGGCAACTGCACTGACCACACACCCGCCACGCATAGACATACTCCACTCACGGCCGCACGCCTGCGCCGTCTGCGACAAACGCTTCACAGCGCCTGGCGCCTGCGCGGCACTGCCGCCTGCACTCGGTTGCGTCCACACGCACGCCCGCCACACGCACGCATGAACATACTCACCCCACGGCCACGCCGGCGTCTGGACAAACGCTTCACCGCGCGGGCCTGCGCGAGCACTGCCGCCTGCACTCGGTTGCGTCACACCACGCACCGCACCGCCACGCATGGAACAATCACATCCACACGGCCGCCGCCTGCGCCGTCTGCAACGCTTCACCAGCGCCTGGCGCCTGCGCGGCACTGCCGCCTGCACTCGGGTGCTCACAGCACGCACTGGACACCCACACGCATAGACATACCCACCTCCACGGCCGCACGCCTGCGCCGTCTGCGACAAACCTTCACCAGCGCCTGGCGCCTGCGGAGCACGCCGCCTGCACTCGGGTCGTCACACCACGCACCACACACGCACCATGACATACTCACCCCACGGCCGCACGCCTGGCCGTCTGCGACAAACTTCACCAGCGCCTGGCGCCTGCGCGGCACTGCCGCCTGCACTCGGGTGCTCCACACGCCGCACcaacacacgcacacgcatagACATACTCACCTCACGGCGCACGCCTGCGCCGTCTGCGAAAACGCCACCAGCGCCTGGCACCTGCGCGAACCACCGCCTCACTCGGTGCGTCCACACGCACACAACACGCCACGCATGACATACTCCCTCACGGCCGCACGCCTGCGCCGTCTGCGACCAGCCACCAGCGCCTGGCGCCGCGCGACACTGCCGCTGCACCGGGTTGCGTCACCACGCActgacacacacgcacgcatAGACATCCCACTCCACGGCCGAACGCCTGCGCCGTCTGCGACCGGCCCACCAGCGCCTGGCGCCTGCGCGACTGCGCCTGCCTCGGTTGCGACACCACCACTGACACACGCACCCAGACTACCCCTCACGGCCGCCCCGCCTCTGCACCCTTCCCGGCCTGGCCCGCCACTGCCGCACCGGGTTCACACCACGCCTGCACCACGCCACGCCGACCTCACACTCCAGCGCCGCCTGCGGGTTTGGCACCTTCCCAGCCCTGGGGCCTCGGGCCTCCGCCTGCACTCGGGGCGCAAACCACGCAACACACGCACACGCGACATACCACCTCGACAGGGTTTCAAGTTTACGGATAATGAGAGGCCGTATTCCTGTAAGATGTGCGATCGCAAGTTTATCAGGCTCCTCGTTGAAGAACCATGTTCGCACGCGTGGAGATGCGCCGCACTATGCGCTGCTAATGTTAGGCGACGGCCTGGCACGCCTGCGCCGTTCTGCGACAAACGCTCACCAGCGCTGCGCCTGCCTCTGCCGTTCTGCGATAAACGCTTCCCAGCGCCTGGCCTGCGCGGGCACTCGCCTGCACTCGGTGCGCACACGCACTGCACTGACACTACACGCACGCTAGACATTACACCGGCGGCGCACGCCTGCGCGTCTCGTGACAAACGCTTCACCAGCGCTGGCGCCTGCCATACCACACTCACACGGCCGCACGCCTGCGCCGTCTGCGACAAACGCTTCACCAGCGCCTGGCGCCTGCGCGGAGCACTGCCGCCTGCACTCGGGTCGCGTCACACGCACGCActgacacacacgcacacgcatagACATACTCACCTCCACGGCCGCACGCCTGCGCACATACTCACACTCACACGGCCGCACGCCTGCGCCGTCTGCGACAAACGCTTCACCAGCGCCTGGCGCCTGCGCGAGCACTGCCGCCTGCACTCGGGTGcgtcacacacgcacgcactgaCACAGCACACGCATAGACATACCACACCACGGCCGACGCCTGCGCCGTCTGCGACAAACGCTTCACCAGCGCCTGAGCGCCTGCGCGAGCACTGCCGCCTGCACTCGGGTGcgtcacacacgcacgcacctgAACACACGCACAGCATGACATACTCACACTCACGGCCGCACGCCTGCGCGTCTGCGACTAGCGCTTCACCAGCGCCTGGCGCCTGCGCGAGCACTGCCGCCTGCACTCGGCGCTTCACCAGCGCCTGGCGCCTGCGCGAGCACTGCCGCCTGCACTCGGGTGCGTCACACGCACGCACGACACACCGCACGCATAGACATACTCACACTCCACGGCCGCACGCCTGCGCCGTCTGCGACAAACGCTTCACCAGCGCCTGGCGCCTGCGCGAGCACTGCCGCCTGCACTCGGCGCCTGAGCGCCTGCGCGAGCACTGCCGCCTGCACTCGGGtgcgcacacacgcacgcacggacacacacgcacacgcatagACATGACTCACACTCACACGGCCGCACGCCTGCGCCGTCTGCGACAAACGCTTCACCAGCGCCTGGCGCCTGCGCGGGCACTGCCGCCTGCACTCGGGTGCGTCCACACGCACGCAccgacacacacgcacacgcatagACATACTCACACACACGGCCGCACGCCTGCGCCGTCTGCGACAAACGCTTCACCAGCGCCTGGCGCCTGCACATACTCACACTCACACGGCCGCACGCCTGCGCCGTCTGCGACAAACGCTTCACCAGCGCCTGGCGCCTGCGCGGGCACTGCCGCCTGCACTCGGGTGCGTCACACGCACGCActgacacacacgcacacgctaGACATACTCACACTCACACGGCCGCACGCCTGCGCCGTCTGCGACAAACGCTTCACCAGCGCCTGGCGCCTGCGCGAGCACCTGCCGCCTGCACTCGGGTGCGCGCACACGCACGCActgacacacacgcacacgcatagACATACTCACACTCACACGGCCGCACGCCTGCGCCGTCTGCGACTAGCGCTTCACCTGCGCCTGGCGCCTGCGCGAGCACCGCCGCCTGCACTCGGTGCGTCaccacgcacgcacgcacacacgcacacgcatagACATACTCACACTCACACGGCCGCACGCCTGCGCCGTCTGCGACTAGCGCTTCACCAGCGCCTGGCGCCTGCGCGGGCACTGCCGCCTGCACTCGGACATACTCACACTCACACGGCCGCACGCCTGCGCCGTCTGCGACTCAGCGCTTCACCAGCGCCCTGGCGCCTGCGCGAGCACCGCCGCCTGCACTCGGCGCCTGAGCGCCTGCGCGGGCACTGCCGCCTGCACTCGGGTGCGTCACCACGCACGCAccgacacacacgcacacgcatagACATACTCACACTCACACGGCCGCACGCCTGCGCCGTCTGCGACAAACGCTTCACCAGCGCCTGGCGCCTGCGGACACTGCCGCCTGCACTCGGGTGCGTCACCACGCACGCACtggcacacacgcacacgcaagACATACTACACTCACAGGCCGCACGCCTGCGCCAGTCTGCAGACAAACGCTTCACCAGCGCCTGGTGCTACTGCGCAGAGCATGACCGCTAG
Protein Sequence: MYGIVIDLQYLDDSSRFDEDPENITLNLIKNEEQARQKNTNISLTDSKTFLKKISSKRKHKTCSERKKSYLCTLCSKKFLKAKTLKAHIKTEHGSEKRPHSCNQCKESFNSEHDLQLHTALHARGDVWTCTECHKKFEARSRLRRHIQRHMQSKRHTCDACGKAFAELYALRRHTRVHTGEQLDKRHACHLCEKRYSSGAALAAHLGRHSGARPCVCACGKAFPSPRLLASHRLVHSDRKPYACQYCEKTFRHESTRNTHHRTHTGEKPYVCANCGKTFIQRSNLILHMRTHTGERPYSCKMCDRKFTSGSSLKNHVRTHTGDKPYSCPVCDKRFARVDMRTHMALHTGERPHACAVCDKRFTSAWRLREHCRLHSGASHTHARTHTHTHDILTLTRPHACAVCDKRFTSAWRLHISLTAARLRRLRQTLHQRLAPAEHCRLHSGASHAALTHARIDILTLNGRTPAPSATNLLQRLGACAGTAACTRTYSHSTGRTPAPSATSASPAPGACASTAACTRCVTHARTDTHAHAQTLTLTRPNACAVCAALHQRLAPARALPLTRLAPARAPACTQVRPHARTATRTHDILTPRPHACAVCDTLHQRLAPARTAACTRAWRPAGTTRPWPTPGASRHTLGNCTDHTPATHRHTPLTAARLRRLRQTLHSAWRLRGTAACTRLRPHARPPHARMNILTPRPRRRLDKRFTARACASTAACTRLRHTTHRTATHGTITSTRPPPAPSATLHQRLAPARHCRLHSGAHSTHWTPTRIDIPTSTAARLRRLRQTFTSAWRLRSTPPALGSSHHAPHTHHDILTPRPHAWPSATNFTSAWRLRGTAACTRVLHTPHQHTHTHRHTHLTAHACAVCENATSAWHLREPPPHSVRPHAHNTPRMTYSLTAARLRRLRPATSAWRRATLPLHRVASPRTDTHARIDIPLHGRTPAPSATGPPAPGACATAPASVATPPLTHAPRLPLTAAPPLHPSRPGPPLPHRVHTTPAPRHADLTLQRRLRVWHLPSPGASGLRLHSGRKPRNTRTRDIPPRQGFKFTDNERPYSCKMCDRKFIRLLVEEPCSHAWRCAALCAANVRRRPGTPAPFCDKRSPALRLPLPFCDKRFPAPGLRGHSPALGAHTHCTDTTRTLDITPAAHACASRDKRFTSAGACHTTLTRPHACAVCDKRFTSAWRLRGALPPALGSRHTHALTHTHTHRHTHLHGRTPAHILTLTRPHACAVCDKRFTSAWRLREHCRLHSGASHTHALTQHTHRHTTPRPTPAPSATNASPAPERLREHCRLHSGASHTHAPEHTHSMTYSHSRPHACASATSASPAPGACASTAACTRRFTSAWRLREHCRLHSGASHARTTHRTHRHTHTPRPHACAVCDKRFTSAWRLREHCRLHSAPERLREHCRLHSGAHTRTHGHTRTRIDMTHTHTAARLRRLRQTLHQRLAPARALPPALGCVHTHAPTHTHTHRHTHTHGRTPAPSATNASPAPGACTYSHSHGRTPAPSATNASPAPGACAGTAACTRVRHTHALTHTHTLDILTLTRPHACAVCDKRFTSAWRLREHLPPALGCAHTHALTHTHTHRHTHTHTAARLRRLRLALHLRLAPARAPPPALGASPRTHAHTHTHRHTHTHTAARLRRLRLALHQRLAPARALPPALGHTHTHTAARLRRLRLSASPAPWRLREHRRLHSAPERLRGHCRLHSGASPRTHRHTRTRIDILTLTRPHACAVCDKRFTSAWRLRTLPPALGCVTTHALAHTHTQDILHSQAARLRQSADKRFTSAWCYCAEHDR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -