Lchi007069.1
Basic Information
- Insect
- Luehdorfia chinensis
- Gene Symbol
- -
- Assembly
- GCA_029286615.1
- Location
- JAGSMQ010000053.1:524078-529138[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00045 0.045 14.9 5.3 1 23 142 165 142 165 0.97 2 17 3.9e-05 0.0039 18.2 2.4 1 23 174 197 174 197 0.96 3 17 0.017 1.7 9.9 0.6 2 23 210 232 210 232 0.97 4 17 0.00029 0.03 15.4 1.4 1 23 241 264 241 264 0.97 5 17 4.4e-05 0.0044 18.1 1.4 1 23 276 299 276 299 0.96 6 17 3.9e-05 0.0039 18.2 0.8 2 23 329 351 328 351 0.97 7 17 0.00033 0.033 15.3 1.3 2 23 361 383 360 383 0.96 8 17 0.053 5.3 8.4 0.7 3 19 389 405 388 408 0.93 9 17 0.00072 0.073 14.2 0.5 2 21 413 432 412 435 0.94 10 17 0.042 4.2 8.7 0.7 3 23 445 466 444 466 0.93 11 17 0.00062 0.062 14.4 3.5 1 23 471 494 471 494 0.93 12 17 0.0025 0.25 12.5 1.3 2 23 505 527 504 527 0.96 13 17 0.00044 0.044 14.9 1.8 1 23 553 576 553 577 0.94 14 17 0.62 62 5.0 0.1 2 23 583 604 582 604 0.89 15 17 0.47 47 5.4 1.0 2 23 610 631 609 631 0.96 16 17 0.0041 0.42 11.8 0.2 1 23 697 719 697 719 0.98 17 17 0.15 15 6.9 2.0 1 23 725 748 725 748 0.96
Sequence Information
- Coding Sequence
- ATGTCGCTTAAAGTAGAAGGTGCTGAAGATTTATCAGTAAAAAGGAAAGATCCTACATCTTTCTTGCCTGAAGAACCTATGtcatatgaaataaaatcaaaaaagaagaaaaagaaaaagaaacacaACCAAGAAGACCCATTTAAGGATATAGAAGAGAAGGTAGCAGTGCCAACAGAAATAGCCCTCGATCCTGAGGTTAACATCAAAGTTGAAAATATTGAAGTAGAGTTGGATTTTAATGATTTCGCAAACGACAATGGTCTGATGTTGGAAGGACCTCACAGTGAGGACAGTCAAGAACCTGTTGTGAAATTAGAACAACAGAATCGTGAAGCTGTGATTTTAACTTTCGAGAGTGTAGTCAATGATAAATCAGTGTTTGGTTACAGTCAAGGCGTTGCGGGACCCATGGAACCGTTTCACGTTTGTAAAATATGCCATCTAGTGTTCCAATCACCTAAAACTCTAAAAACGCACCAGAAGAGAAAGCACAAAGTGTTCCGGCGGTCGTTCAAACATATCTGTGATCACTGTGGGATGTCCTACGAGCAAAAGACAAGTTTGATTGCGCATATTAAGCGGAAACATGGACCGAACTCTATGCCCGATGACAGGGAAGAAAGGACTTGTGATATTTGTGCTCTGGTGTTTAAAGGCATTACAAGGTTAAGGATGCACATGCGTAGAAAGCACGGATCCTTTGAAGAATCCTTTCGACACGTTTGTAAAGATTGTGGCCTAACGTACGACAAGTACAGGAGTTTGATAGTTCATATTCAGAGGAAGCACACGACTGCCAAGAAACCTGTGGTTAACCAGTGGTTTAACTGTCCTTTTTGTCCAAAAGTCTTCACAAAACGCGAGACTTACGCGAGACACGTGCAAAGAAAACACCGAGTCAACGAAGATGATAATATAAAACAGGAAAACGTAGAACAGAATTTACTCGATAATTGCAAGAATGATGAGACCGGTGAGATAACTTGTAAAGAATGTCCTCTTGTGTTCTCGTCGCTAAATTTTCTTAAACTGCACATGAGAAGAAAGCACAACGCGTTACAGGAGAACTTCAGGCTCAAATGCAGAATTTGCAATTTATCATACGACAAGATTGAAAGTTTAAAGCGACATATTAGAAGGAAACACGACAAGGCGTCGTTTTGTGAGGtgtgcaataaacaatttgacACCAGAGAGCTGTATTTAAATCATTCGCATGTAAAAATGATCAAGGAGTGCTCAATTTGTGGATTAATCTTCGCGTCCCAGGGCGGATTGAGTAAACATTTGCGTTGCGCCCACAAAATAGATACACCTAAAACTGTGTTTTGCGATCTGTGTAACGAAGGCTTCAACGATAAAAGGCAACTGAAGCCTCACTTTATGAAAGTGCATTTAAAAGTGTCGTACACCTGCCGTTATTGCAAGAAAGTGTTCAAAGCGAAAGAGAGTTACAGACGCCATGTTTTATTCAAACACCCTGTGAATAATATAAGTGGTCAATCGCAAAAATGCGAGCATTGCACTGACACGTTCCCAGACGAAGTGGAGTTATGTCGACATATTAATATCGCTCACGGGAAAGCTCCCGAAGCGGCACAAAACCCAGAAGTAGTTTTaattaagaaagaagaaatCGATTTTAAAGAGTCTTTCCAATGTTCGAAGTGTCCCGAGTCGTATTTCACTTGGGAGGAGCTTCGAATGCATTACGAACAAAACCACCACACTGTCGAAGACACCCAGTGTCAGATATGTGGAGAAATAGTGCCCGGGAACGAACTTCAGAAGCACATAAAGAATACCCACATGGAGACAATGTTGCAATGCCAGTATTGTGAATTCCAAACATCGATACGTGCGAGCATGACTCAGCACACGCTTAGGCACAAGAACGCAACAACATTGAACTGTGATGTCGACGGTTGCAAATACAAGACATTCTACGAGGGCGTAATGGTGaaacataaaaagaaacatATGGAGCAGGGCGTCAAGTTGCAGTGTACGCAATGCTCGTTCCaaacaaagaataaatatatcttCAAATACCATGAAGAGGCGCATATGACTGGCAAGAAGCGGTACACTTGTGACCAGTGCGATTACGCGACAATCCTGCCCGCGAATTTAGTTCAACACAGGTACAAACATTCCTCAGAGAAGAGGTTCAAATGTGAGGTGTGCCCGTTCGCGACGAAGTACAATACGTCTTTACGTTTCCatgtaaaaaagaaacattgtGATCTCCCTTCGTTCAGTtaa
- Protein Sequence
- MSLKVEGAEDLSVKRKDPTSFLPEEPMSYEIKSKKKKKKKKHNQEDPFKDIEEKVAVPTEIALDPEVNIKVENIEVELDFNDFANDNGLMLEGPHSEDSQEPVVKLEQQNREAVILTFESVVNDKSVFGYSQGVAGPMEPFHVCKICHLVFQSPKTLKTHQKRKHKVFRRSFKHICDHCGMSYEQKTSLIAHIKRKHGPNSMPDDREERTCDICALVFKGITRLRMHMRRKHGSFEESFRHVCKDCGLTYDKYRSLIVHIQRKHTTAKKPVVNQWFNCPFCPKVFTKRETYARHVQRKHRVNEDDNIKQENVEQNLLDNCKNDETGEITCKECPLVFSSLNFLKLHMRRKHNALQENFRLKCRICNLSYDKIESLKRHIRRKHDKASFCEVCNKQFDTRELYLNHSHVKMIKECSICGLIFASQGGLSKHLRCAHKIDTPKTVFCDLCNEGFNDKRQLKPHFMKVHLKVSYTCRYCKKVFKAKESYRRHVLFKHPVNNISGQSQKCEHCTDTFPDEVELCRHINIAHGKAPEAAQNPEVVLIKKEEIDFKESFQCSKCPESYFTWEELRMHYEQNHHTVEDTQCQICGEIVPGNELQKHIKNTHMETMLQCQYCEFQTSIRASMTQHTLRHKNATTLNCDVDGCKYKTFYEGVMVKHKKKHMEQGVKLQCTQCSFQTKNKYIFKYHEEAHMTGKKRYTCDQCDYATILPANLVQHRYKHSSEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01154433;
- 90% Identity
- iTF_00204537;
- 80% Identity
- -