Basic Information

Insect: Luehdorfia chinensis
Gene Symbol: -
Assembly: GCA_029286615.1
Location: JAGSMQ010000192.1:1708788-1715514[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.85 85 4.6 1.3 1 23 28 50 28 50 0.97

2 27 0.099 9.9 7.5 0.5 2 23 78 100 77 100 0.94

3 27 0.43 44 5.5 5.5 2 21 124 143 123 145 0.94

4 27 0.22 22 6.4 0.4 2 23 150 171 149 171 0.95

5 27 0.0033 0.33 12.1 2.7 1 23 176 199 176 199 0.94

6 27 1.4 1.4e+02 3.9 5.9 2 23 209 231 208 231 0.94

7 27 0.0069 0.69 11.1 5.4 1 23 237 259 237 260 0.93

8 27 8.3e-05 0.0083 17.2 2.5 1 23 264 286 264 286 0.98

9 27 0.25 25 6.2 1.9 1 23 330 352 330 352 0.98

10 27 0.0044 0.44 11.7 0.1 2 20 380 398 379 399 0.94

11 27 0.012 1.2 10.4 3.5 1 23 425 447 425 447 0.98

12 27 0.012 1.3 10.3 0.3 3 23 453 473 452 473 0.95

13 27 0.0036 0.36 12.0 1.3 1 23 478 501 478 501 0.91

14 27 0.1 10 7.5 3.8 2 23 511 533 510 533 0.95

15 27 0.049 4.9 8.5 1.9 1 23 539 562 539 562 0.94

16 27 1e-05 0.0011 20.0 0.5 2 23 567 588 566 588 0.96

17 27 5.4e-05 0.0054 17.8 1.2 1 23 594 616 594 616 0.97

18 27 0.82 83 4.6 0.8 3 23 683 704 682 704 0.94

19 27 0.15 15 6.9 1.7 6 23 779 796 775 796 0.93

20 27 0.0054 0.54 11.5 3.0 1 21 800 820 800 825 0.94

21 27 4.8 4.8e+02 2.2 0.2 3 23 864 885 862 885 0.91

22 27 0.056 5.6 8.3 0.2 2 23 911 933 910 933 0.97

23 27 0.06 6.1 8.2 2.0 2 23 957 978 956 978 0.96

24 27 0.00029 0.029 15.5 0.0 1 23 982 1005 982 1005 0.97

25 27 0.053 5.4 8.3 0.4 1 23 1009 1032 1009 1032 0.96

26 27 0.00016 0.016 16.3 2.8 1 23 1071 1094 1071 1095 0.96

27 27 0.0054 0.54 11.5 1.4 1 23 1104 1127 1104 1127 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.85	85	4.6	1.3	1	23	28	50	28	50	0.97
2	27	0.099	9.9	7.5	0.5	2	23	78	100	77	100	0.94
3	27	0.43	44	5.5	5.5	2	21	124	143	123	145	0.94
4	27	0.22	22	6.4	0.4	2	23	150	171	149	171	0.95
5	27	0.0033	0.33	12.1	2.7	1	23	176	199	176	199	0.94
6	27	1.4	1.4e+02	3.9	5.9	2	23	209	231	208	231	0.94
7	27	0.0069	0.69	11.1	5.4	1	23	237	259	237	260	0.93
8	27	8.3e-05	0.0083	17.2	2.5	1	23	264	286	264	286	0.98
9	27	0.25	25	6.2	1.9	1	23	330	352	330	352	0.98
10	27	0.0044	0.44	11.7	0.1	2	20	380	398	379	399	0.94
11	27	0.012	1.2	10.4	3.5	1	23	425	447	425	447	0.98
12	27	0.012	1.3	10.3	0.3	3	23	453	473	452	473	0.95
13	27	0.0036	0.36	12.0	1.3	1	23	478	501	478	501	0.91
14	27	0.1	10	7.5	3.8	2	23	511	533	510	533	0.95
15	27	0.049	4.9	8.5	1.9	1	23	539	562	539	562	0.94
16	27	1e-05	0.0011	20.0	0.5	2	23	567	588	566	588	0.96
17	27	5.4e-05	0.0054	17.8	1.2	1	23	594	616	594	616	0.97
18	27	0.82	83	4.6	0.8	3	23	683	704	682	704	0.94
19	27	0.15	15	6.9	1.7	6	23	779	796	775	796	0.93
20	27	0.0054	0.54	11.5	3.0	1	21	800	820	800	825	0.94
21	27	4.8	4.8e+02	2.2	0.2	3	23	864	885	862	885	0.91
22	27	0.056	5.6	8.3	0.2	2	23	911	933	910	933	0.97
23	27	0.06	6.1	8.2	2.0	2	23	957	978	956	978	0.96
24	27	0.00029	0.029	15.5	0.0	1	23	982	1005	982	1005	0.97
25	27	0.053	5.4	8.3	0.4	1	23	1009	1032	1009	1032	0.96
26	27	0.00016	0.016	16.3	2.8	1	23	1071	1094	1071	1095	0.96
27	27	0.0054	0.54	11.5	1.4	1	23	1104	1127	1104	1127	0.97

Sequence Information

Coding Sequence: ATGACAGTCCCTGAAAGGAACAATGCTGCGACATTTATCCAGTTCACCACAGTCAGGCCGTTCACATATATGGGCTCCACATTCAAATGTTTTTACTGCTTGCAATACTACTCGGAAGTTACCAGTTTACTTGAACATACTTTGAGCCACCAACTTGATGACAGagacacaattttaaataaatacatcccGAGAGGGAAACGAATGATACTTGTCGATATATCGATTCTAAAATGCCGAATTTGTGGACAAAACTGTCCCGACTTAAACACAATCAGACAACATTTGGAAATCGACCACGACAAGAAATTCTTTCCTGCCAGCAACGGCATGACAGAGTATAAAATGGAGACAAATAACGGATTGTTAACTTGTCATATTTGTGAAGACAGCTTCCATAATTTCTCACTCTTGAACACCCACATGAATTGTCATGTTGGTAAAGTCGTATGCGAGAGCTGTGGTGCCGGTTTTTTAAATCAACATCTCTTGTTGAAACACAAAGAATCGCATTTGATAAAACGCTTTAATTGCAAGTACTGCGACAGGGTTTTCTTCAAGAAGAGTCAACAAAAGTATCACACCGAGATCGTTCATAAAGGCAAGGATAGAGTTAAACTAAAAAAGTGCCAACATTGTTCACAAACTTTCAAGGAACACTATAGTAAAATGATGCATTTGAAAGAGGTGCACGGGATCACGAAGTCATTTCTTTGTCACATCTGTAAAACTGACTTTAGCACACGGCGCGCCCTGACAGAGCACACTACTAAACATCACACGGAAAAGTTCAAATGTGAAGTGTGCTCTAAATGTTTCGGAATTGAGTCTAAATTGAAGCAACATATGCGAGGGCACAATGCTCCCGCCAGGGTTCGCACAACAACGAGCATGTGGGCGATGACGTTATCGGAAAGGGAAAACGCGGCAAATTTCTTACAACACACTACTATCGTTCCCTTCACCTACCTTTCTTACCCTTTCTCCTTCAAATGCTTCTTTTGTACTGAGAAGTATTCAGAGCTGCCAAAGTTACTGGAACATTCTAAAACCCACACGGTACCGGAAAGAGTCGTGTTAAtgaaagactttttaaaaaaaggcaaaAAAACTATCAAAGCAGACATATCCGAATTGGAATGTAAGATTTGCAAACTTCCATTTACGAATTTGGACGATGTTCGCAAACACTTAAGCTGTGTCCACAGTAAAGAATTTACGGAAGCGGGAAACGGTATCATCGCGTTTAGTTTACGAACAAAAAACGGCGTTTACTCTTGTCACATGTGCTCGGATACCTTTTAcagcttttttcttttaaacaagCATATAAATGTGCACTACAGTAACGCGATCTGCGAGTCGTGTGGCAAAGGATTCGTGTCTCACGCTAGGCTGATACAGCACAAAGCAATCCACCTAACCGGACAGTATCCCTGCGACAAATGCAAAAAGACTTATAGTAGTTTACCCAAACTTAAATATCACAATGATAGGATTCACGGAGGATTGGCAAAAGTTAAATCTTCAAAATGTCAAGTCTGTGAAGAGAGATTTGAACATCACTacgataaaattaaacatttgagGGATTCACACGGAATGTCGTACAGTTACCCTTGCGAGACGTGTAACATCGTCTTCGATACACGTAAATCTTTGTACTTCCACACAAAAAAGTATCACACGCACAATATTATGTGCGAAATATGCAATAAGCCGTTCGCTGAACGCAATCATTTGAAAAAGCACATGGCAGTGCATACGAAAGCGAGAAATTTCGCTTGTTCCTTATGTAGCAAAACCTATAGATACGAGAAAAATTTGAAGGACCACATGAGTGTGCATAATCCTAATTGGAAATTTGCCTGTGCCAGCTGTTGGGTTGGCTTCAAAAGGGCCACATTGAAAATATGCAGACGTAGTGATGTTCAGCCGAAAGCGAAAATAGTTCTCGTGTACCAAACGCCACAACGCCGCAATGCCGAATTGATATTAAAACATTCCACAGCGTACCCGTTCAAGACACGCTTCAGTCAGATACTCTGTGCTTACTGTCACACTGAATTCGAACTTCTGTCAGAATTAAAGTTTCACATGGAGAATGAGCACATTAATGCGGATTTCAAAAACGTTTTCTATAGAATGAAAGGGAATTTAATCAAAGTAGATATAAGCGATCTGGTGTGTAAGATTTGTTGCCGAGGGGTTCAGGACATAGATGCGCTCATGCAGCATTTCTCACAGGAGCACGAACTGCCAGTGAAGTTTAACGCGTGTTTCGGCGTACTACCCTACAAGCTGACCGCTGATAGTAAATGGATTTGCGTCTGCTGTGACAAAACTTTCTCCGCCTTCATCGACTTCAAGCGTCACATAACTTCCCATTTCATGAACTACAATTGCGACAAATGCGGAACGACTTTCGTAGCCTATCATGCGTTGAGGGATCATCAACGTCAGGTTAAATGTCACCGTATCGCTTACAAGCCTCGTAATGGACGGATCATGAGGCCTAGAAGTAACGCGGAAATAATTTTACAGTGTTCATCGGCGTACCCTTTCCGGACTTGGATGAGCAACTTGAACTGTGTCTTTTGTAGAGTTAAAACAAGGGATCCGGTGGTTTTCCGAAATCATATGGCGTTGCTGCACGAAACGTACGATGTTCAGTCGGCATTCTATAAGAAATTAGGCAAAGCATTTTTAAATGTGGACATAACGGATCTTCAATGTAAACTCTGCTTCATGTCTATAGAAAATTTTGAAGACCTAATAGTGCATTTGAAGACTGAACATCAGCAGCCAATTAGGTCTGACGCTCAGTTTGGCGTACTGCCTTTCAAGCTAAATGATGGTTCGTCGTGGAAGTGCGCGATGTGCACTAGCCAGTTTAAGGACTTCATGTCTTTAAAGAAACATACGCAGAATCACTTCCAGAATTACGTCTGCGACACGTGCGGCGAGGGTTTCATTACCGAGTCCGCTATGATAGCTCATACTAAGATACCCCACGAGAATAAGTACAATTGCAGCCGGTGTGTAGCCACCTTTTCAACGCTAGAAGAAAGGAACGCTCATGTCAAATCGCAACACACGTCAACGCCTTACGTCTGTGTTTACTGCAAAGACAAGCCGCGTTTCGCAACCTGGGAAGTAAGGAAGAAGCATCTGCTGGAAGTTCACAATTACGGTACCGGCGGTGATAATTACGAATGTACGATATGCCAGAAGTCGTTCAAGTCCCGCTCCGGAAAATACAATCACATGGCTCGAATCCACCATGTTATTAAAGATTCCGAATTAGGTTATACGTGTACTAGTTGCTCCAGAGCGTTTACCAGCCAACTTTTTTTGGATAAACATATTGCGAAGAAGCACAGTGATGTGTAA
Protein Sequence: MTVPERNNAATFIQFTTVRPFTYMGSTFKCFYCLQYYSEVTSLLEHTLSHQLDDRDTILNKYIPRGKRMILVDISILKCRICGQNCPDLNTIRQHLEIDHDKKFFPASNGMTEYKMETNNGLLTCHICEDSFHNFSLLNTHMNCHVGKVVCESCGAGFLNQHLLLKHKESHLIKRFNCKYCDRVFFKKSQQKYHTEIVHKGKDRVKLKKCQHCSQTFKEHYSKMMHLKEVHGITKSFLCHICKTDFSTRRALTEHTTKHHTEKFKCEVCSKCFGIESKLKQHMRGHNAPARVRTTTSMWAMTLSERENAANFLQHTTIVPFTYLSYPFSFKCFFCTEKYSELPKLLEHSKTHTVPERVVLMKDFLKKGKKTIKADISELECKICKLPFTNLDDVRKHLSCVHSKEFTEAGNGIIAFSLRTKNGVYSCHMCSDTFYSFFLLNKHINVHYSNAICESCGKGFVSHARLIQHKAIHLTGQYPCDKCKKTYSSLPKLKYHNDRIHGGLAKVKSSKCQVCEERFEHHYDKIKHLRDSHGMSYSYPCETCNIVFDTRKSLYFHTKKYHTHNIMCEICNKPFAERNHLKKHMAVHTKARNFACSLCSKTYRYEKNLKDHMSVHNPNWKFACASCWVGFKRATLKICRRSDVQPKAKIVLVYQTPQRRNAELILKHSTAYPFKTRFSQILCAYCHTEFELLSELKFHMENEHINADFKNVFYRMKGNLIKVDISDLVCKICCRGVQDIDALMQHFSQEHELPVKFNACFGVLPYKLTADSKWICVCCDKTFSAFIDFKRHITSHFMNYNCDKCGTTFVAYHALRDHQRQVKCHRIAYKPRNGRIMRPRSNAEIILQCSSAYPFRTWMSNLNCVFCRVKTRDPVVFRNHMALLHETYDVQSAFYKKLGKAFLNVDITDLQCKLCFMSIENFEDLIVHLKTEHQQPIRSDAQFGVLPFKLNDGSSWKCAMCTSQFKDFMSLKKHTQNHFQNYVCDTCGEGFITESAMIAHTKIPHENKYNCSRCVATFSTLEERNAHVKSQHTSTPYVCVYCKDKPRFATWEVRKKHLLEVHNYGTGGDNYECTICQKSFKSRSGKYNHMARIHHVIKDSELGYTCTSCSRAFTSQLFLDKHIAKKHSDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -