Basic Information

Insect: Luehdorfia chinensis
Gene Symbol: -
Assembly: GCA_029286615.1
Location: JAGSMQ010000192.1:1310992-1312893[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0018 0.18 13.0 3.2 3 23 61 81 59 81 0.96

2 16 2.2 2.2e+02 3.3 0.3 2 19 109 126 108 131 0.72

3 16 0.013 1.3 10.3 0.6 1 23 151 174 151 174 0.96

4 16 3.5e-05 0.0035 18.4 0.8 1 23 179 202 179 202 0.96

5 16 0.00045 0.045 14.9 1.8 1 23 207 230 207 230 0.95

6 16 0.0063 0.63 11.3 0.5 2 19 233 250 233 252 0.95

7 16 0.013 1.3 10.3 3.3 2 21 262 281 261 282 0.94

8 16 0.0043 0.43 11.8 3.8 1 23 338 361 338 361 0.96

9 16 1.3 1.3e+02 4.0 0.0 2 23 389 411 388 411 0.91

10 16 0.65 65 4.9 0.1 2 23 434 457 433 457 0.93

11 16 2.9e-05 0.003 18.6 0.3 3 23 464 485 463 485 0.94

12 16 0.0056 0.57 11.4 4.5 2 23 490 512 489 512 0.93

13 16 0.0014 0.14 13.4 2.5 1 23 517 540 517 540 0.97

14 16 2.6e-06 0.00026 21.9 5.2 1 23 544 567 544 567 0.98

15 16 0.00022 0.022 15.9 0.3 3 23 575 595 573 595 0.96

16 16 4.4e-05 0.0044 18.0 0.6 1 23 601 623 601 623 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0018	0.18	13.0	3.2	3	23	61	81	59	81	0.96
2	16	2.2	2.2e+02	3.3	0.3	2	19	109	126	108	131	0.72
3	16	0.013	1.3	10.3	0.6	1	23	151	174	151	174	0.96
4	16	3.5e-05	0.0035	18.4	0.8	1	23	179	202	179	202	0.96
5	16	0.00045	0.045	14.9	1.8	1	23	207	230	207	230	0.95
6	16	0.0063	0.63	11.3	0.5	2	19	233	250	233	252	0.95
7	16	0.013	1.3	10.3	3.3	2	21	262	281	261	282	0.94
8	16	0.0043	0.43	11.8	3.8	1	23	338	361	338	361	0.96
9	16	1.3	1.3e+02	4.0	0.0	2	23	389	411	388	411	0.91
10	16	0.65	65	4.9	0.1	2	23	434	457	433	457	0.93
11	16	2.9e-05	0.003	18.6	0.3	3	23	464	485	463	485	0.94
12	16	0.0056	0.57	11.4	4.5	2	23	490	512	489	512	0.93
13	16	0.0014	0.14	13.4	2.5	1	23	517	540	517	540	0.97
14	16	2.6e-06	0.00026	21.9	5.2	1	23	544	567	544	567	0.98
15	16	0.00022	0.022	15.9	0.3	3	23	575	595	573	595	0.96
16	16	4.4e-05	0.0044	18.0	0.6	1	23	601	623	601	623	0.97

Sequence Information

Coding Sequence: ATGAATAAAGTAAAAGAGATCGTTGTAAGGAGGTACAATTACAGAaaggataatttattttcagatgAAATTCCGCAAGGGCCGTACGAGAACTGTGCCTCTGAAAAGCGGAGGAAAAACTTGCAAATTCTGTTCAACAACACATCTGTTCTGCCATTCAAATGGCGAGGAAGGTGTCTCTGTTTCTATTGCGGGAAAAGCTACACGGAGTATCCGGATTTTAGAAAACACACCCAATCCCACGGCCCGTGCACCACGAAAGATTATTCGTTGAAACTAATCAAAGGAAatcatatagaaataaaaatcgaTGTCTCGGATATCACGTGTGAAATTTGCAATGAGCCATTCGCATGTTTCGATGACATAATCGATCATTTAATCGGGAAGCACAGTTTagattatgataaaaatatcgaCACGCCGTTTCAGGAATATAGACTGGCGGATTTTCGCTGTCTTCTCTGCGAACAGCAGTTCACGTACTTCGGATATTTGGTTAATCACGTGAATAACGTTCATCCGCGAAATAACTACATTTGTGACGAGTGCGGTGCTAGTTTCAACAAGAAACGGGATCTGGCGTTGCATTTACGCCATAACCATCGCCAGGGAGGATACCCTTGTTCGGAGTGCTCGCTGAATTTCAACTCGCACGGTCTTCTACGCAAACATCAAAACGATTTTCATTTTAGGAAGTGCAAACGTTGCGGTCTGAACTTCGCTTCCTACAGTCTCTTACTAAAGCATAGTCAGTGCGACCATCCAGACGACGGCACTGTCAAATGCCCCCATTGCTCCAAACAATGTCATTCCCCGCAAGGCTTAAAACAACATATCAATAAATGCAAAGTAAATATGCTCGTGCAAATAGATCAGCCTGTCGATCACGGCTTTCCTAACGATAATTTTCTGCAAccgaaaaagaaacaaaacgtCCAACAAATACGACAGAATATTCAGTGTGTTCTCAACATGTCAACAGCCTTGCCATTTAAGTTTTTCGCAAAATATTGCTGCTTCTATTGTTCGAAGAAATTTGTGGAATTTGACGATCTTAAAGAGCACACTCAATCGGAACATCCTGTGTGCGATTTGAAGTCGAAAAGCATGAAAAAATGTAAAGGGGAGAGGATAACTGTAAAAATAGATATAACTGGCTTAAATTGTAAGGTTTGCGGTGAGCAAATGGGGGATTTAGACTTTCTAATAGATCATCTAATTTCACAACACAACGCCAACTATGATAAAACCGTTACTGGTTGTCTAGAACCTTACAAAGTGATAAAAGACAACATGCCGTGCCCAGTCTGTCCGAATCGCGTATTTAGATACTTTGGAATCCTGCTGAGGCATATAAATTCCGAGCACagcaataataatagaatttgtGACTTCTGCGGCCGTAGTTTTAAGAATGTAACCAATTTAAAAGTGCACATAACTTACGCACACACTGGCGCCTGCGAGTGCGATGTCTGCGGTACCAAATACAAGAATCAGTGGTGTCTCAGCCGGCACAAAGCCAAAAGCCACAACGCTAAAGATTACAAATGTCCGAAATGTCCGGAACTATTCCAGTCGCAGTACCACAAGCAGAAGCATTTGATTAAAGTTCACGACATTGGTCACAAGTGCACGTACTGTGGGAAAATGTTCACTAGGAACTCCTTCATGAAGGACCATATTCGCAGGACGCATTTGAAGGAGAAGAACGTGATATGTTCGGTTTGCAACGAGAGGTTTTTTGACAACTACCTGTTGAGAATGCATATGGTGAAGCACGAAGGCGAGCGAAAATTTAGTTGTGACGTATGCGGTAAAGCATTCCTTAGGAGGAGCAATCTCAGTTCGCATAAGGAGATGCATAAGAAATACGGACATTTACAGGCTcagatataa
Protein Sequence: MNKVKEIVVRRYNYRKDNLFSDEIPQGPYENCASEKRRKNLQILFNNTSVLPFKWRGRCLCFYCGKSYTEYPDFRKHTQSHGPCTTKDYSLKLIKGNHIEIKIDVSDITCEICNEPFACFDDIIDHLIGKHSLDYDKNIDTPFQEYRLADFRCLLCEQQFTYFGYLVNHVNNVHPRNNYICDECGASFNKKRDLALHLRHNHRQGGYPCSECSLNFNSHGLLRKHQNDFHFRKCKRCGLNFASYSLLLKHSQCDHPDDGTVKCPHCSKQCHSPQGLKQHINKCKVNMLVQIDQPVDHGFPNDNFLQPKKKQNVQQIRQNIQCVLNMSTALPFKFFAKYCCFYCSKKFVEFDDLKEHTQSEHPVCDLKSKSMKKCKGERITVKIDITGLNCKVCGEQMGDLDFLIDHLISQHNANYDKTVTGCLEPYKVIKDNMPCPVCPNRVFRYFGILLRHINSEHSNNNRICDFCGRSFKNVTNLKVHITYAHTGACECDVCGTKYKNQWCLSRHKAKSHNAKDYKCPKCPELFQSQYHKQKHLIKVHDIGHKCTYCGKMFTRNSFMKDHIRRTHLKEKNVICSVCNERFFDNYLLRMHMVKHEGERKFSCDVCGKAFLRRSNLSSHKEMHKKYGHLQAQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01159895;
90% Identity: -
80% Identity: -