Lchi017303.1
Basic Information
- Insect
- Luehdorfia chinensis
- Gene Symbol
- -
- Assembly
- GCA_029286615.1
- Location
- JAGSMQ010000192.1:1746046-1763839[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0087 0.87 10.8 0.3 1 21 88 108 88 113 0.95 2 26 0.0071 0.71 11.1 0.1 2 23 181 202 180 202 0.97 3 26 0.00057 0.057 14.5 0.8 1 23 206 228 206 228 0.96 4 26 0.26 26 6.2 1.7 1 22 233 254 233 256 0.84 5 26 0.013 1.4 10.2 3.0 1 23 262 285 262 285 0.95 6 26 0.25 25 6.2 1.3 2 23 292 314 291 314 0.92 7 26 0.00041 0.041 15.0 1.0 1 23 319 341 319 341 0.97 8 26 0.00029 0.029 15.5 0.1 1 23 347 369 347 369 0.97 9 26 0.002 0.2 12.9 1.2 2 20 373 391 373 392 0.94 10 26 0.0052 0.53 11.5 1.2 1 20 459 478 459 479 0.96 11 26 0.018 1.8 9.9 0.1 2 23 552 573 551 573 0.97 12 26 0.0054 0.54 11.5 0.2 1 23 577 599 577 599 0.96 13 26 0.049 4.9 8.5 1.2 1 21 604 624 604 627 0.74 14 26 0.0059 0.59 11.4 1.1 1 23 633 656 633 656 0.95 15 26 0.0046 0.46 11.7 0.3 1 23 663 686 663 686 0.95 16 26 1.6e-06 0.00016 22.6 0.6 1 23 693 715 693 715 0.97 17 26 2.6e-06 0.00026 21.9 0.3 1 23 721 743 721 743 0.98 18 26 0.00029 0.029 15.5 0.7 2 23 747 769 746 769 0.97 19 26 0.0058 0.58 11.4 0.2 1 23 857 880 857 880 0.94 20 26 0.56 57 5.1 3.4 2 23 907 929 906 929 0.96 21 26 0.041 4.2 8.7 2.7 1 23 951 973 951 973 0.98 22 26 7.2e-05 0.0072 17.4 0.5 1 23 977 999 977 999 0.98 23 26 3.3 3.3e+02 2.7 0.5 1 14 1004 1017 1004 1027 0.74 24 26 0.0027 0.27 12.4 0.2 1 23 1033 1056 1033 1056 0.90 25 26 0.1 10 7.5 1.0 1 23 1063 1086 1063 1086 0.93 26 26 5.4e-05 0.0054 17.8 2.9 1 23 1093 1115 1093 1115 0.97
Sequence Information
- Coding Sequence
- ATGCTTAAGAAGGTGTTCAAAGTAGTCACCGTGATAGATAATCGGCCCGCAGGACAATGTGATAggCTCGCCGGGCAAACAGAAAATGATCCTATTGTAGAGGAGGAtcggaatttaaaaaaagaacagatGATCGAAGTTTGGGAGAAGCAGCGGCTGCTCAAGAGTGCCAGGGCAGTGACTAGGACCGCAATGAAAAAGAATGCCGGTAATCTACTGGAGTGCTGGACCCTGTGTCCGTTTAAATGGCGACAGAGCAGATTCAAATGTGCCTATTGCAGCCAGGGATTCGCACAAGCGGCTGAAATGAGAGAACACGTTAGAGAATGCGCTGAACATCATTCCATCGACGACATATTCCATGGTTTGAAAGAGACTCCTCTAATTAAAGTAGATATAACAGACGCAGTTTGTCGCTTCTGCTCTTGTCCATTCCCAGGAGTAGGCGAGATGAGGCAGCACGCCGTGCAGCACGGCTTTGAATTCGACGCCAGCGTCAAGAACAGTATTATACCATTCGTTTTGAACCAAGAGGCTTGGCGCTGTGCCATGTGCGAAGAGAGCTTTGGGGTATTTTTCGAACTGTACAAACATATGAATGTTCACTATGAGCGGTTCACCTGCAAAACCTGCGGGAAAGGATACATGACCTCCATTCGATTGAAGAGACACTTGGAAGGGCATGTGAAAGGATTATTCCCATGCGATTTGTGCGATGAAACGTTCACCGTACGCACGAAGAGGTACCAGCATAAAGCGCACGTGCACTCGAAGGGTCCGAGGTATATGTGCCCTCACTGCGACGTCCGCTTCCATCGTTACGACGACAGGGTGAAACATCTGAAGGACGAGCATCAGGAATTCGTGGCGGTTAAGTGCGTACACTGCGACCTGACTTTCGAAAATACCGGCAAACGTAGATCGCACGTTTATTCCGTACATATGCAGAACAAGTTCAAATGCACTTACTGCGAAGCCAGTTTCGGGACGAAAGCCCGATTGCGGAACCACTTGGTGAAGCACACCGGCGAGAAGAGATTCATTTGTAAGCTTTGCGGCAACAAATATCCGAGGAGTGCCGCGCTGTGGAATCACCTCAGGGCGCACGAGGAGAGGACTTGCAAATTATGTGACGTTATGTTCAGCCGTCGGTCCGAGCTCGCGTCGCATACGTGCCCTAAAAAGACGGGAAACGAAACTGTCGTTAAGATAGAGACCGCTGATGATTTACAATTAGGAGACTTAATCAAATTGAAGGAAAAGCGACGCTATGTAAGGAGCGCCAGGGCTGAGGCGAGGATTGTTACAAAGAAAAACGCCAACTCGTTGTTGGAGTGCTGGTCCGTATGCCCGTTTAGGTGGCAACGGAACCGGTTCAAATGCGCCTACTGCGAGGAGAGCTTTATTCATTGCAACGAACTGAGAGAACACGTAGGCGAATGCTCCTCCAAGCATAGCGTCAAAGATATTTACAGCAAATTCAAAGAAATGTCCCTCATTAACGTCGACGTGACCGGCGCGTTCTGCCGTCTCTGTAGGTGCCCGTATACTGGCATTGTACAAATGCGACACCATGTTGTCCAACACGGGTATGAATTAGAAACTTCACAGCCTGACGGAATTTTGCCTTTTAGTCTGGATAAAGAGTGCTGGCGTTGCGTTATATGCGATgcgatttttaataatttcctcAAGCTCTATGAGCATATGAATGTTCACTACCAACATTATATTTGCTCGACCTGTGGGAAAGGTTACATGACCGCACCACGCCTGAGAAAACATTCCGAGGTCCACATAACTGGGTCCTTCCCGTGCGAGAAATGCGGGAGAGCTTTCACGATGCGTGCCGCGAGGGACCATCACAAAGCGCACGCCCACGCGAAAGGTCCTCGATACGAATGTCCACACTGCAATATGCGTTTCAACGGATACTATGACAGGATGAATCATTTAAACGAAGCTCACAGGGAGAAGCAAGTTTCTTACCGGTGCAGCGTTTGCGAATTGTCGTTCAAGACTAGCGGGAAACGTGCGATGCACGTCAGAGCTGTGCACTTGCCGCAGCCGCGTAACTTCGCCTGTCCGTATTGTGATTGGCTATTTAAGACCAGTTATGAGTTGAAGAGACATATGGTGAAGCACACTGGCGAGAGGAACTTCTCCTGTGCGATTTGTGGGAAGGCCTATCCGAGGAATCGGGCCCTGAGGACGCACTTGAAGACGCACGAGGACATGACGTGCAAGTGGTGCGGGGCCCTGTTCAAGCAGCGCGGTCAGTTGTTGTCGCATACGCGAACCAATCATACAGATTTGAATGATTTAATAGCGGTCGGCTCGGAAAAGATATCCTGTTCCGCTAATGCGGAAGTCGTGGGAAACGTAGTTAAACGAGTTAGGAAGTTAAAAGAAAACGTAAGCGCGCGCCAGATGCGAAGACGTCGCCGCGCTAACAACGAATTGCCCGAAGAATCAGAGAGGCGAATCTCGAAAACTATGATGCGGCGGAACGCAATGACCCTAATCGAATGCTCAACCGCGTGGGCCTTTAGATGGTTTCATAGCGCGTTTTTCTGCTCCTATTGCGATGAGAAATTCATAGACACGGGACCATTGCGAGACCATGTGGCCTCTTCACATTCAAGCGGCACTCCCACCAAGCGTATATTTTCAAAGCTGACGGAAAATAACATGGTTAAAATTGACATAACCGTTCTAAAATGTAGGTTGTGCCACATCAACTGTAAAACGATAGACGTACTCAAAAATCATTTAACAACTGCACATCAACTCACAATCCATAAGGAGTACAGCGATGGGGTACTGCCGTTTAAATTAGACAACAACGGGTTTCATTGCCAGATATGCTTTGAGTATTTCGCAAGCTTCTCCAAAATAAACGAACATATGAACTCGCACTATCAGAATTATGTTTGTGACGCCTGCGGGAAGGCTTTCGTTTCGAAGTCGAGGTTTAGGACGCACGTGCAATCACACGAGATCGGAACCTTTCCCTGTAGCGAATGCGGCGAGGTTTTGCAGACTCGGGCGGCCCGCATGTGTCATAGATTGAAAGTGCATAGGAAAGGTGTCCGTTACACATGTCCTCGATGTCCCGAAGTGTTTACCACGTACTACGCAAGAGCGAAACATTTGGTAGAGGACCACGCTCAACAGAGAAGGCATTACGAATGTGTAGCATGCGATAAAACTTTCGAGACGAGTTGTAAACGGGCAGCCCACTTCCGCGCTGCTCATAAACCTGTTGAGAAACGGTACGAGTGCCTTTATTGTCATTGGTACTTTGTCAGCAAATCGAAACTGAAACGACATTTGCAAGCACACAACGTTGACGATGGAGAATAA
- Protein Sequence
- MLKKVFKVVTVIDNRPAGQCDRLAGQTENDPIVEEDRNLKKEQMIEVWEKQRLLKSARAVTRTAMKKNAGNLLECWTLCPFKWRQSRFKCAYCSQGFAQAAEMREHVRECAEHHSIDDIFHGLKETPLIKVDITDAVCRFCSCPFPGVGEMRQHAVQHGFEFDASVKNSIIPFVLNQEAWRCAMCEESFGVFFELYKHMNVHYERFTCKTCGKGYMTSIRLKRHLEGHVKGLFPCDLCDETFTVRTKRYQHKAHVHSKGPRYMCPHCDVRFHRYDDRVKHLKDEHQEFVAVKCVHCDLTFENTGKRRSHVYSVHMQNKFKCTYCEASFGTKARLRNHLVKHTGEKRFICKLCGNKYPRSAALWNHLRAHEERTCKLCDVMFSRRSELASHTCPKKTGNETVVKIETADDLQLGDLIKLKEKRRYVRSARAEARIVTKKNANSLLECWSVCPFRWQRNRFKCAYCEESFIHCNELREHVGECSSKHSVKDIYSKFKEMSLINVDVTGAFCRLCRCPYTGIVQMRHHVVQHGYELETSQPDGILPFSLDKECWRCVICDAIFNNFLKLYEHMNVHYQHYICSTCGKGYMTAPRLRKHSEVHITGSFPCEKCGRAFTMRAARDHHKAHAHAKGPRYECPHCNMRFNGYYDRMNHLNEAHREKQVSYRCSVCELSFKTSGKRAMHVRAVHLPQPRNFACPYCDWLFKTSYELKRHMVKHTGERNFSCAICGKAYPRNRALRTHLKTHEDMTCKWCGALFKQRGQLLSHTRTNHTDLNDLIAVGSEKISCSANAEVVGNVVKRVRKLKENVSARQMRRRRRANNELPEESERRISKTMMRRNAMTLIECSTAWAFRWFHSAFFCSYCDEKFIDTGPLRDHVASSHSSGTPTKRIFSKLTENNMVKIDITVLKCRLCHINCKTIDVLKNHLTTAHQLTIHKEYSDGVLPFKLDNNGFHCQICFEYFASFSKINEHMNSHYQNYVCDACGKAFVSKSRFRTHVQSHEIGTFPCSECGEVLQTRAARMCHRLKVHRKGVRYTCPRCPEVFTTYYARAKHLVEDHAQQRRHYECVACDKTFETSCKRAAHFRAAHKPVEKRYECLYCHWYFVSKSKLKRHLQAHNVDDGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -