Lchi011840.1
Basic Information
- Insect
- Luehdorfia chinensis
- Gene Symbol
- -
- Assembly
- GCA_029286615.1
- Location
- JAGSMQ010000105.1:64897-75844[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.5e-07 0.0012 19.2 0.0 5 35 44 73 42 78 0.92 2 2 0.019 24 5.4 0.0 7 34 224 250 221 260 0.85
Sequence Information
- Coding Sequence
- ATGGACCACGGGATACCGCTGAACATACACGCTCGGCCGCGCATCGTCGGCAGACGACCGAACGCAATTGTTAACATAGAAACCGATGTCTTCCAAGAGAAGTCCTACAAGCAATACTCCTCACAACATCTCCGTGAAGCATTAATAGCAGTAAAGAAAGGCTACAGTGTGTACGCAGCCTCAAACAAATACGGTGTGCCAAGGAAAACTTTACGGAATTGGATGGAAAAGTATGATATTAAGAGTCAGTTCTCTAAAGGACGTCGCGGGGCGAGAACGACTCAGATCCTAGATCCATTGGATCTGATGAGGGAAACCAGATCTAATAACCGAACCCTCACAGAGTTCGCGATAGCCAACGTGCAGTGCCAATACGACAGTCCGTCGGACAACGAAACGGAGACGGAGCGACCCGCGGCGCGACCGCCCGACGACCACACCTACGACCTGCGAGACGAGCCGCCCGCCTTCATCATCCACCAAgCATCGCACCTTCAACCCTCGGCCCCTTACGTGGAAGTACGGCCAAAGATAATGACCATAGGGCCCGGCTACACGCCCAGTGTCAACGTCATACACGTCGGAGATCGCCCGCAGGTAACCCAATCCTCACAACCGACGGAGTATAACATCAACAAGCGGATACGGCGCAGCGAAGTAGTGTTGCGGCAGGCCGCAGACTGCGTCAGCCGCGGCCTCACCTTCCAAACCGTCTCCGAACAATTCAATATACCCATCTCCACTATACGGTTCTTTATGGCGCGCAAAGGCATACTCCCCCGTCGGCGTCGGGGCCGCAGTGCTCAATTGAGTCGGTCGTGCAGCAGTCCGGAGCCGCCGTTCCACATGCAGCACTTCAAGCTGCCCGACATGCTGTCGCTGCGCGCCGACGAGTCGGACGGCAGCTCGCCGCCCGACCTCAAGCTGCAGTAA
- Protein Sequence
- MDHGIPLNIHARPRIVGRRPNAIVNIETDVFQEKSYKQYSSQHLREALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKGRRGARTTQILDPLDLMRETRSNNRTLTEFAIANVQCQYDSPSDNETETERPAARPPDDHTYDLRDEPPAFIIHQASHLQPSAPYVEVRPKIMTIGPGYTPSVNVIHVGDRPQVTQSSQPTEYNINKRIRRSEVVLRQAADCVSRGLTFQTVSEQFNIPISTIRFFMARKGILPRRRRGRSAQLSRSCSSPEPPFHMQHFKLPDMLSLRADESDGSSPPDLKLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00957894;
- 90% Identity
- -
- 80% Identity
- -