Lchi020931.2
Basic Information
- Insect
- Luehdorfia chinensis
- Gene Symbol
- -
- Assembly
- GCA_029286615.1
- Location
- JAGSMQ010000290.1:530803-549282[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 4.1e-11 5.1e-08 33.2 0.0 1 39 171 210 171 214 0.89 2 8 3.5e-12 4.3e-09 36.6 0.1 2 39 226 263 225 266 0.94 3 8 2.6e-07 0.00033 21.0 0.2 4 30 283 309 280 310 0.93 4 8 0.5 6.2e+02 0.9 0.0 18 30 340 352 339 352 0.90 5 8 0.41 5.2e+02 1.1 0.0 18 30 378 390 377 391 0.90 6 8 0.5 6.2e+02 0.9 0.0 18 30 421 433 420 433 0.90 7 8 3.5e-06 0.0043 17.4 0.0 23 45 464 487 459 487 0.89 8 8 4e-18 5e-15 55.6 0.0 1 43 494 537 494 538 0.96
Sequence Information
- Coding Sequence
- ATGAGAGAGTCAAATGAGGAGAGTGGTACTACTAATGCTTGCTTTGGGGAATTTCGAAATTACCTTCTTCTATTTCTAAATGTTATCCTCGAGAAGtATACCACATCGGAACTGCTCACGGTTAAAGTGGAAGCTGTCGACGAGGCCGATGATATTGCGTCTTCGGATATTTTGCATCATTTACAGGTGGCGGGTCCGCTGGAGTTGACGCcgcccgcgcccgccgcgccgGCCGCCACCCCTGTGGGCGCGCGGCCCGGCCCGCCGCCGGGCGCCTCGCCCGACACCCTCGAGACCCTCGAGCCGGCTCGCGCCGCGCCGGGCACCACACTACTCGATAGGCACATGCAGTTGCTTGGCTCCAATGACATTGACTCCGATTTCATGCCGTTGCTGCCCATAAAGGATGAGCCTTTGTCCGAGGGAGAGAAGGAGCAGCTCAGCGACGAGGCCAGCGAATCGGGCGATGGGGGCGAGGCGGGCGAGGCGCGCGGCAGCCCCAAGAGCTGGACGCCGAGCGACATGCAGCGGGCGCTGCAGGCGCTCCGCGACCGCCGCATGAGCCTCACAAAGGCGTCAGCGACGTACGGCATCCCGTCGACAACGCTGTGGCAGCGCGCGCACCGGCTGGGCATCGACACGCCGAAGAAGGACGGCGGCGCGAAGAGCTGGAGCGACGACGACCTGCGCGCCGCGCTGCACGCACTGCGCGCCGGCACGCTCTCCGCCAACAAGGCCAGCAAGGCCTTCGGTATCCCAAGCAGTACTCTGTACAAAATAGCACGGCGCGAAGGCATCCGTCTCGCCGCGCCGTTCAACGCAGCGCCTACGTCGTGGCGCCGCAGCGACCTGCAGCTGGCGCTAGCAGCCATCCGCTGCGGCGCTGCGTCCGTGCAGCGCGCCGCGGCACAGTTCGGCATCCCCACCGCTCGCCGCGGCACAGTTCGGCATCCCCACCGGTACGTAAGTCCGTGCAGCTCGCCGCGGCACAGTTCGGCATCCCCACCGGTACGTAAGTCCGTGCAGCTCGCCGCGGCACAGTTCGGCATCCCCACCGTTCGGCATCCCCACCGGTACGTAAGTCCGTGCAGCTCGCCGCGGCACAGTTCGGCATCCCCACCGGTACGTAAGTCCGTGCAGCTCGCCGCGGCACAGTTCGGCATCCCCACCGCTCGCCGCGGCACAGTTCGGCATCCCCACCGGTACGTAAGTCCGTGCAGCTCGCCGCGGCACAGTTCGGCATCCCCACCGGTACGTAAGTCCGTGCAGCTCGCCGCGGCACAGTTCGGCATCCCCACCGTTCGGCATCCCGACCGGTACGTAAGTCCGTGCAGCTTGTCGCGGCACAGTTCGGCATCCCGACCGGTACGTAAGTCCGTGCAGCTTGTCGCGGCACAGTTCGGCATCCCGACCGGTACTCTATACGGAAGATGCAAGCGGGAAGGCATCGAGTTGTCGCGATCCAACCCCACCCCCTGGTCGGAAGATGCAATGGGAGAGGCCTTGGACGCAGTCAGgGTTGGTCAAATGTCCATCAACCAGGCAGCAATACACTACAACTTGCCATATTCTTCACTGTATGGCCGATTTAAACGATGCAAGTACCAGACGCAGGGTCTGCAGTCAGTGCAGCAATCAGAAATGCAGAATAATCTCGAAATGGAGCACCAAAACCATAATCAGAACCAGGAATCGCTGTCTTACTACCACTCATTACCGTCTCATACAGTCCACAGCCCGCCTGAGGATCAAACGAGCATACAAATTCCGTACAGCCAATTATTAAGCGAAGTCCATGACACTATGCACGGTCATATGTTGCTTCAAGAGCAGTACAGCGGGCAGGGACTTTACTACACGCAAGGTTGCTACAGCGGCGTCGCAACCAGTTGA
- Protein Sequence
- MRESNEESGTTNACFGEFRNYLLLFLNVILEKYTTSELLTVKVEAVDEADDIASSDILHHLQVAGPLELTPPAPAAPAATPVGARPGPPPGASPDTLETLEPARAAPGTTLLDRHMQLLGSNDIDSDFMPLLPIKDEPLSEGEKEQLSDEASESGDGGEAGEARGSPKSWTPSDMQRALQALRDRRMSLTKASATYGIPSTTLWQRAHRLGIDTPKKDGGAKSWSDDDLRAALHALRAGTLSANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTSWRRSDLQLALAAIRCGAASVQRAAAQFGIPTARRGTVRHPHRYVSPCSSPRHSSASPPVRKSVQLAAAQFGIPTVRHPHRYVSPCSSPRHSSASPPVRKSVQLAAAQFGIPTARRGTVRHPHRYVSPCSSPRHSSASPPVRKSVQLAAAQFGIPTVRHPDRYVSPCSLSRHSSASRPVRKSVQLVAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALDAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQTQGLQSVQQSEMQNNLEMEHQNHNQNQESLSYYHSLPSHTVHSPPEDQTSIQIPYSQLLSEVHDTMHGHMLLQEQYSGQGLYYTQGCYSGVATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -