Lser011240.1
Basic Information
- Insect
- Lucilia sericata
- Gene Symbol
- -
- Assembly
- GCA_015586225.1
- Location
- NW:23764-40195[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00058 0.027 14.6 6.0 1 23 1073 1095 1073 1095 0.97 2 10 0.39 18 5.7 0.7 2 23 1161 1183 1160 1183 0.90 3 10 0.012 0.57 10.5 2.4 2 20 2201 2219 2200 2221 0.94 4 10 0.00014 0.0064 16.6 1.6 1 23 2258 2280 2258 2280 0.97 5 10 4.2e-05 0.0019 18.2 0.3 1 23 2291 2313 2291 2313 0.96 6 10 0.00028 0.013 15.6 6.9 1 23 2318 2340 2318 2340 0.98 7 10 2.4e-05 0.0011 19.0 2.6 2 23 2347 2368 2346 2368 0.96 8 10 0.002 0.092 12.9 0.9 2 23 2374 2395 2373 2395 0.97 9 10 9.9 4.6e+02 1.3 3.4 1 23 2436 2459 2436 2459 0.83 10 10 0.0082 0.38 11.0 1.9 2 23 2466 2488 2465 2488 0.96
Sequence Information
- Coding Sequence
- ATGCTAAGCCCGGAGGAATATATTCTCGATTTTAAGGCAGAGGAGAGAAAAACCCAAGCGACAGTTTTCGATATAGAAGATATTGAAAGTGATGGCACTTTATCAGCCAGTGAGGTCGATAGCAATGGCGGCGGTACTCCCACACCACCATTGCTTTGCAAACTTAAGAAAGTTCGTGTTATGATTAAAAAATTACCCTCCCATGTTTTAGAAacttataaactaaataaaaataatagcaGTAAAGCAAAAACCAACAGttCCTCTGCCAAAAAGGCTGCAAGAATATCCAAACGAAAGGGAGCCAAAACTGTGCCAGGTTTATATTTGTCTTTACATGTTAATAAACCTTTAAATGAAGTTCTTAATGTACGAAAAAGACGCaagagtacttttttaaatacttcGCGAAgacatttcaatataaataagcAAAAGGTGGTAACTAACGATAAAAAATCTGTAGAACTTTcgcaaaaatcaaaaacaaccACAAGAAGATCTGTTAGAAGTATTGCTCTAAAAAATGAAAGAAGCAATACTGTTGCAAAGTCATCAACACAAAAAAACTGTTCCACTATCAGCAGCTCTTCAGCAAGAACCTCTGGTCtaagaaaaacaagaaaagaGTGTCAATTCATTAAACCCCAGGCAcctttaataacaaatatttcatcCAATAGACCTAATACTAGTTTACATGCAAAGATAGCAGCCACTAGACCAATAAACAaagaggaaaaaataaaaagatttgtGGCCACATTACCTAATTGTCCAGATGTTGTCATAACGAAATATGATTTACCAACAAACTCGCAAACTAGATCGTCACAGTTTACACATCCTGCAAATTCTTTAATATATAATCCAGCAGTCGTGCCATCATTACAAACTTTATATCAAGCTTATCCAGATTCCAGATTGCTAACTACACCACAACATAATATTACTATCCAAGTTCCTGATACTTCAACATTAACAAACTTAtcacaaatacaaaatacacagaCAAATAACGCTTTTCCCACACTCATTATGTCTGCTCCCCGTCGTCTACCAATGTCAGTACCAAACCAACCACCAATAATACCCACTTCCACTTTAACACAAACTTCCTTTATAACGCCAAAAGCAAATGATTCCATTACAAAGCCAGCATTAAAAAATGATCCTGagcaaaataaaaccaaaaatttacgaaaaaggCAACGAAAAGATACGGGAAATTATTATGAAAGTGATATGGAAACCTGTCTGCAATCCGAATCTGAAGATCTGGAAATGTCGGACACTGAACAGCGTAGCAGCAATGTGCCAGAAGTTATAAAGCGTATAATATATCACACTAAATCGGTACAAACAAAgtTCACTTGCAATGGCACCATTTGCGGCTTAGTAGACTCggatgaatttaatttaaattgtttttactgTTATGAGATCTTTCCTTTGCACAAATGGATGGAGTTTAAGGAACATATTAAAGTTGTACACCATGTAGAGGAGCAGGCAAATGAAAATGAAaccgaagaagaagaagaaacggAAAATGCAAATCTTACCACAAATTCCGATACTCAAACTATAAATCTAAAGGCAAAAACTTTAAGCAACAAGGACAGGTTAATAGCAAAACCAGTAGAATCACCTCCTAAAGaatgtgtttataaaaaattgccaCTCGAACCTAGACTTGTGGCTCAACGTGAGCGAGAACTTAATAGAATAACCTCGGGCCCAGCtaaaaattcaataactcatgtAAATAAGAGTCCAGCTAAGAAATCCTCACAACAACTAAACCAATCACAACAATCAAATTGTTCATCTAGAGGAAATACTTCAGTGGATCTTAGCGATGATATTATTAGTTTAAATAGCGATGATAGCGACGATGATGTTCTACAATTGGTTGATGAAGATATTAGAGAGCATGTGgtgaaaaataaacagaaagttaaaaaatctaataATGATATGTCCCTAATCGATAAAGTAGCTAAACTGATACCGCCACATATAACTATTAAAAAGGTCCAAAAACCTTGCTCAACTGAAACggcaaatACCAGCAAACCAAACGTCCCggaaaaaacaatttctttagtaAAGCCCTTTATTAACAAAGCAACTACTGTAACCCCTAagACCACTGATACTTCCTTAGATGAGCCCTTTATAAAAGTGCCTTCTAATTTCAATATACAAAgagttattaaatatatacctaAACCCACTATTGAAAAATCAACCGGTGTAGAGAGTACTAAACCTAGATACTTTGTGGTGAAGAAAATTGTAAAACCAGCCAACAAGATACCCAATCTAAATGTGTCGAAAGGCATGATTGTAAACAAAAGGTTGATGGCAAATGATAATGACATGCCTTCGAATGATGAAAATGAAGATGCGATGCCCAAACCCACCAATGGTGGTGGTattttatttggTTTAACTAATCCCATGGTGGTTATAGAATTTCTTTTGAAACTAAAATCTTTCCCAGAATTATGGCGTCCGCAAGTGAAAACTAATTCAGCAAATTACGAtgaaagtattaaaaaattatgttttcatCTTAACAGTCGTTTCGagttaaatataaaagatattgaAATGCGTCTTAGTATACAGCGCGTTAAGGATTGGTATTGTCGCATGCTGAAAAAGATTCACGAGCAcaataaaaattgcaataatacGGAACcatttaaacacaaatttccattgtattttaaaattctaaatcaATTCCTAACCTCTGATGTTCATTATACTAATAACCTTTTGCTAAGTTCACACAAGTCcgatacaaatattaataaatgtatGGTAAATAAGACGGCAGAGGAGGCTCCCAAAACAAATGCATTTCATTTGGATAAAGAGAAAGAAGATCTGAATAGTTCTAGATCACTTTTAACACCAACAAACAACACAACAGCAGTTAACAAGGAACCagctgcagcaacaacaactgcagTCAAATCTACTACCCTACCTATTAATGATCCACCACCCGACACAGAAACTGcaacaaatttagaaaataataccGACAGTCTTATAGAATTTGATGCCGATATTTTATACGAGGACGAAAGTAGCGATGAAGAGGTGCTGGAGCCATTCGATGAAACAAAACCGTCAAAGAAAAAAACCAATAAACTCAAAGACCCTACCACAAGACGTACCAAGACTTATTTGGGCAGGTATGAATGTGATGTATGCAAAAAAGTTTACAAACGTAAATGTGACTTAAGACGTCATAGAATTCATCACTTCCCTCCACAATTTGAATGTTCTGTTTGCTCACAAAAATTCTTCTTCAAGCATTGGGCCGAAAAATGTAATCATCTTAGAAAGCGTAAATATACTATAATGAACAAATCCGATAAAACTGAAGCTGAAGGCGAGGGGCGTGTGGAAACCGTGATACCCAAAAAATggcccaaaaaaatatttagatttaaattgATTTGTGAGATATGTGGTGCTTCCTATAGACAGATTGGTTCTTTGAATTGCCACAAAAGAGACAAGCATTTAAATCAAAGACTCAAATGTGTGGTATGTAGTTTTACCGCCCTCACCAATTATCGCATAGTGCAGCATCAGAAAAAGCGGCATATTGTCGAACCGGGTACAGTAGAAGAAGTAGCTAAGAAAAGCCGAGCACGTACGGATACTAAAACACCCTTTTCGGTGGAGGCTAGACAAGAATTTGACTGGCGTCGCGAAATGCGCAAGAAACTGCAGCCGGGTGAGAAATTTTTCGCCTGCTGCAAATGTCGCATCATCTTTAATTCACGCAAAGAAAAGGTTTTACACAACAAACTTGAGCACCCCATTAAAGAAACTTCTGTGGTTTGTCTTTTATGTTTGCCCAATAAATTTCTCTTATCCAACTCCAACTCAGCTCGACGTCATTACACCGACATACATAAAGTACCCTGGGATGAAATCGATGCTTTGGTCAAGCGCACTAAACcggttttcaatattttaagcaAAGATGAAATTGAGCTTTTAAATGCCAGTCAAAATTGGAAGGAACTTTTGGAAGAGTTAATAAAGGATAGAGAACTGGAGCCGGTGGAAAAGATAAAGACTCAAGTAGATGAAGAAGCCATACAGgcgatacaaaatttaccaattATTAACACAGAACCCGAAATAGAAGTGAATAAAATCGATGTGGAATGTGGAACAAAGGAAGAAGAAAATGTATATGTTGATGGCATGGAGGAGAGTAAGAAGGATGAAAATATTTACGTAGATAACATGGAGGCAGCAAAAGAAGAAAATGTTTATGTGGATAACATAGAGGCAGAGAAGGAAGATAATGTTTATGTAGATGACAGAGAAGAAGCGAAGGAGGAGAATGTTTATGTAGATGGCATCATAGATCATGACTACAATAACGAGGAAATGGTGTATACTGAGCAAGAACAATACACCACCCACAATAACAATGAACATGATTACAGCGAGGAACAAGGCGATGCCATTGAAAGTTATAATAACTACGAAGAAGAATTAAATGAACACAATAATGATCAGTTATATGAACATTCGCCCAACGTAGCAGTTGAGGGTATAAATGCACCCATTGCTTATAACATAGAATGCACTGAAGATGTAATAGACGATCATCAAAATACTGAACATAATGACCAAGAATATCTTCAAACTATTGTCGATGATTTGGTCGAAGGAGAATTGGTCGATGGGCAGTTGGTAGAAGAATGTATTGTGGTAGAAGAGTGTATTGATGATGTTATCGATGAAGAACTGGAATATTTTGAATACGAAAACAAGGAACAGTCCTCCGACGAAGAGCATGAAGTAGAAATATTGGACGATGAATTGCATGAAGTaaacaaaaatttaaactgtGCGACCGACTTcttcaataaattaaataagcaaattaacaataaaatgaGATCTTGTTGCATTTGCAAGAAAAAAGCTACAAATggaaatcgaaattttttttccgttCCAAAAGATGAACGCCGAAAGATATGGATGAAAGTTTGCCGTATGAATTTCATGGCAAGTGCAGTGATTTGCATGGACCACTTTCCACCAAATTctattattaaaaatgaaagaaaaatgaTATTAATGCCCAATGCATTGCCTACCTTATGCATCTCAGACGAAAAGCTAACGAGTATTAAATTGGAGAATTTATCAGACGAAGAGGAGCATGAAGTAAATATAGAAAACAATGTCATTGATGATAAAGAGCAAAATCCcaatattgaaaacaattacATGGATGAACTggAAATCAACACCGCAGTTACCCCAAACTACTACCCGCCAGATCCTCTTAGTAATGAAATTGTAGAAGATGTGTTGGgagaaaacttattaaatataaataacaatgaGCTGCCTGATCTTTTCGAAGGAAATCCTCTTGTACAAATACCTATTGTTAAGCCAGAGAATAGATCAATATCCACACAAACTAATACGCGGCTCTGCGGCTCAGTAGAAGTATCCGAGTGCGCGGAAGAATATCGACTTAATTGTTTCTATTGTCCTGTAACATATCCATTGGCGTACTATAAAAAGTTCATAAgtcatatgaaaaaaaaacattttgactTTGAATCAGCATTTGATATACCCAAATATGTTTCAGACGACCACGATTATACTCCAATCATTGAGCCGCCTTCCTCTCCACCAATTGATGCTGTTGTACAAACTCAACCACAAGAACCTCTGGTTATTGAGGCTAACGCTTTACTACCATGTCTAGTACGATTATTAAAATCAGCCTATAATCCCTTTGGAACCGTTTTAAGTCAAAATTCCAATTCTACTATAGCAGTACAGCAGAAGAACACGATGGTTAATTGCAACAACAATGAACAATTTGATAATTTTGTAAAACCTGCAATACCACCACAACCAGCACTTGGAAaggaaaataaactaaaatattcatatatgtCCAACCAGAATATACAAACTTTCACTTTGCCAGAGCACTCGAAAAATGAAAAAGACATGCCGCTTAAAAAAAGAACTATCAAAAAATCCAGGAGAAAAAGTATTTCGGGAAATTCAGGGAAAAGTAAGGAAAAGaTTCTCTCTTCGGGAGTAATTTATTTACCAAATACAAAACGGCAAACTGCTTTAAGTCGTTGTCTTAAGCGGTCTAGTACAATTGATACATTAGAGCCGCCAGAGCCACTAGAAGATGACGCTTCTCCTATAGAAGATGCAAATGTTCAGCCATATACAACAGAGCTTTCTTTCGAATACACGCCACGTGACATAATCGATTCCATGTTAGACTGTATGAAAAATTATCCTGTCTTGTGGGAGTTTGATGCTGAACCATTTAATGATGATTACTACGAAGCTGTTGAAGAATTGTGCCGTGTAATCAACGAAAAATGGTCTATGAATATCGATAATTTGAAAATGCGTCGCAGTGTTAATCGTGTACTTAGATATTACTGGTCGGTTTATCCATTggaaaatgtggaaaatataGATCAATTTACTTGTTATTATGATCAATTGGCGGCTTTTTTGCCAGCCTCTGTGCATGAAATAGCCTATTCCCGTTGTTCGCACTGTTACCGATGTTACAAAAATGATAGTGATCTAAGAGCTCATCTGTTGGAGGAATTTAGGCACCTTCAATGGCCCCACAAGTGTGTGCAATGCAAGGAATGTTTTAGGGATATTAATGAATTTGAGTTTCACAAAAGTCTGCCTCACTATTTGGAAGTATTCAGATGTGAACAATGCGGCAAGCCTTATACTCAACGCAATAAATTCAACAAACATGTATCTATCCACCAAATAAAACAAAGTTCCGAACCCGGTAAATACGTGTGCAATATCTGCGGCAAAGAATATAAACTTAGTAGTGAATTACGGAATCATTTGGTTTATCACGGAGAGAAAAAACACAAGTGCCATTTGTGTCCGAAAGCCTTTTTCACGAATGCCACTCTAAGACATCACTTAAGAAGTCATAATAAAGAATATCGCTTAATATGTGAGGTATGTGGCAAGGGTTTTATTCACCACACCAATCTCAGGGAGCATATGAAAAAACACACTGGAGCTAAGATCACTTGTAATATTTGCaatttgaaattaagaaaatcaaGTCTAATGCGACATCTACGTACAGTGCATGTAGCCTGCGAGGGCACCATTGAAAGTACCTACAGAGCGAGAAACCATCATTATAGGAAATTACTACAATGGCCCAGTAAGCACTATACTCGCCGCACCAAATATAAAAAGGAGAAAGACTACTGTTGTAAAATCTGTGACATACATTTCGATGGCTACAAACAGATTGTGGAACACAATAAGGAATTTCATGCCAATGGCCAAAAGTGGCCGTGTAAATTATGTACTTCGGAATTTAATCGTAAATTAAATCTCAGTCGTCATTATCGCAGAAAACATCAGCTGCATGCTTATCAAGTTTTCAAATTAGTCGATAAGGGCGAAGATGTAGATACAGTGTTGGCGATAAAACCCGAAGAGTTGGATAGATTAACCGAAACTTTACAGTATTCACTGAATACTGGATTGACTGGAGCAAATAGTACATCTACAGCAGCAGCcgaaacacaaaaacaaagcaCAATAGAAACAACTACAATAATCAAAACAGATCCCTCACCAGAGGAGATTTATATTGAGGAAGAGAGACTCCACAGCGATACAATACAAGATCAAATAATGCAGGTTGTTGATGAGGATAACATCGCCTCACACGATATTAAAGTCGATGACGATCATTATATGCATGATTTTTTCACAAATCTcttaaaataa
- Protein Sequence
- MLSPEEYILDFKAEERKTQATVFDIEDIESDGTLSASEVDSNGGGTPTPPLLCKLKKVRVMIKKLPSHVLETYKLNKNNSSKAKTNSSSAKKAARISKRKGAKTVPGLYLSLHVNKPLNEVLNVRKRRKSTFLNTSRRHFNINKQKVVTNDKKSVELSQKSKTTTRRSVRSIALKNERSNTVAKSSTQKNCSTISSSSARTSGLRKTRKECQFIKPQAPLITNISSNRPNTSLHAKIAATRPINKEEKIKRFVATLPNCPDVVITKYDLPTNSQTRSSQFTHPANSLIYNPAVVPSLQTLYQAYPDSRLLTTPQHNITIQVPDTSTLTNLSQIQNTQTNNAFPTLIMSAPRRLPMSVPNQPPIIPTSTLTQTSFITPKANDSITKPALKNDPEQNKTKNLRKRQRKDTGNYYESDMETCLQSESEDLEMSDTEQRSSNVPEVIKRIIYHTKSVQTKFTCNGTICGLVDSDEFNLNCFYCYEIFPLHKWMEFKEHIKVVHHVEEQANENETEEEEETENANLTTNSDTQTINLKAKTLSNKDRLIAKPVESPPKECVYKKLPLEPRLVAQRERELNRITSGPAKNSITHVNKSPAKKSSQQLNQSQQSNCSSRGNTSVDLSDDIISLNSDDSDDDVLQLVDEDIREHVVKNKQKVKKSNNDMSLIDKVAKLIPPHITIKKVQKPCSTETANTSKPNVPEKTISLVKPFINKATTVTPKTTDTSLDEPFIKVPSNFNIQRVIKYIPKPTIEKSTGVESTKPRYFVVKKIVKPANKIPNLNVSKGMIVNKRLMANDNDMPSNDENEDAMPKPTNGGGILFGLTNPMVVIEFLLKLKSFPELWRPQVKTNSANYDESIKKLCFHLNSRFELNIKDIEMRLSIQRVKDWYCRMLKKIHEHNKNCNNTEPFKHKFPLYFKILNQFLTSDVHYTNNLLLSSHKSDTNINKCMVNKTAEEAPKTNAFHLDKEKEDLNSSRSLLTPTNNTTAVNKEPAAATTTAVKSTTLPINDPPPDTETATNLENNTDSLIEFDADILYEDESSDEEVLEPFDETKPSKKKTNKLKDPTTRRTKTYLGRYECDVCKKVYKRKCDLRRHRIHHFPPQFECSVCSQKFFFKHWAEKCNHLRKRKYTIMNKSDKTEAEGEGRVETVIPKKWPKKIFRFKLICEICGASYRQIGSLNCHKRDKHLNQRLKCVVCSFTALTNYRIVQHQKKRHIVEPGTVEEVAKKSRARTDTKTPFSVEARQEFDWRREMRKKLQPGEKFFACCKCRIIFNSRKEKVLHNKLEHPIKETSVVCLLCLPNKFLLSNSNSARRHYTDIHKVPWDEIDALVKRTKPVFNILSKDEIELLNASQNWKELLEELIKDRELEPVEKIKTQVDEEAIQAIQNLPIINTEPEIEVNKIDVECGTKEEENVYVDGMEESKKDENIYVDNMEAAKEENVYVDNIEAEKEDNVYVDDREEAKEENVYVDGIIDHDYNNEEMVYTEQEQYTTHNNNEHDYSEEQGDAIESYNNYEEELNEHNNDQLYEHSPNVAVEGINAPIAYNIECTEDVIDDHQNTEHNDQEYLQTIVDDLVEGELVDGQLVEECIVVEECIDDVIDEELEYFEYENKEQSSDEEHEVEILDDELHEVNKNLNCATDFFNKLNKQINNKMRSCCICKKKATNGNRNFFSVPKDERRKIWMKVCRMNFMASAVICMDHFPPNSIIKNERKMILMPNALPTLCISDEKLTSIKLENLSDEEEHEVNIENNVIDDKEQNPNIENNYMDELEINTAVTPNYYPPDPLSNEIVEDVLGENLLNINNNELPDLFEGNPLVQIPIVKPENRSISTQTNTRLCGSVEVSECAEEYRLNCFYCPVTYPLAYYKKFISHMKKKHFDFESAFDIPKYVSDDHDYTPIIEPPSSPPIDAVVQTQPQEPLVIEANALLPCLVRLLKSAYNPFGTVLSQNSNSTIAVQQKNTMVNCNNNEQFDNFVKPAIPPQPALGKENKLKYSYMSNQNIQTFTLPEHSKNEKDMPLKKRTIKKSRRKSISGNSGKSKEKILSSGVIYLPNTKRQTALSRCLKRSSTIDTLEPPEPLEDDASPIEDANVQPYTTELSFEYTPRDIIDSMLDCMKNYPVLWEFDAEPFNDDYYEAVEELCRVINEKWSMNIDNLKMRRSVNRVLRYYWSVYPLENVENIDQFTCYYDQLAAFLPASVHEIAYSRCSHCYRCYKNDSDLRAHLLEEFRHLQWPHKCVQCKECFRDINEFEFHKSLPHYLEVFRCEQCGKPYTQRNKFNKHVSIHQIKQSSEPGKYVCNICGKEYKLSSELRNHLVYHGEKKHKCHLCPKAFFTNATLRHHLRSHNKEYRLICEVCGKGFIHHTNLREHMKKHTGAKITCNICNLKLRKSSLMRHLRTVHVACEGTIESTYRARNHHYRKLLQWPSKHYTRRTKYKKEKDYCCKICDIHFDGYKQIVEHNKEFHANGQKWPCKLCTSEFNRKLNLSRHYRRKHQLHAYQVFKLVDKGEDVDTVLAIKPEELDRLTETLQYSLNTGLTGANSTSTAAAETQKQSTIETTTIIKTDPSPEEIYIEEERLHSDTIQDQIMQVVDEDNIASHDIKVDDDHYMHDFFTNLLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -