Basic Information

Insect: Lucilia sericata
Gene Symbol: wdn_1
Assembly: GCA_015586225.1
Location: NW:99879-104577[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.8 1.3e+02 3.0 0.6 1 21 314 334 314 335 0.85

2 8 4.4e-06 0.00021 21.3 0.7 1 23 339 361 339 361 0.99

3 8 0.071 3.3 8.1 1.8 2 23 373 393 372 393 0.93

4 8 3.3e-06 0.00015 21.7 1.0 3 23 401 421 399 421 0.98

5 8 2.6e-05 0.0012 18.9 5.1 1 23 427 449 427 449 0.98

6 8 0.00025 0.012 15.8 3.0 1 23 455 477 455 477 0.97

7 8 6.2e-06 0.00029 20.8 0.8 1 23 483 505 483 505 0.96

8 8 0.00011 0.0053 16.8 2.3 1 23 511 534 511 534 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.8	1.3e+02	3.0	0.6	1	21	314	334	314	335	0.85
2	8	4.4e-06	0.00021	21.3	0.7	1	23	339	361	339	361	0.99
3	8	0.071	3.3	8.1	1.8	2	23	373	393	372	393	0.93
4	8	3.3e-06	0.00015	21.7	1.0	3	23	401	421	399	421	0.98
5	8	2.6e-05	0.0012	18.9	5.1	1	23	427	449	427	449	0.98
6	8	0.00025	0.012	15.8	3.0	1	23	455	477	455	477	0.97
7	8	6.2e-06	0.00029	20.8	0.8	1	23	483	505	483	505	0.96
8	8	0.00011	0.0053	16.8	2.3	1	23	511	534	511	534	0.98

Sequence Information

Coding Sequence: atgaaaGAAGAAGCAGAGACAAGTAGTAAATTGCCGCCTAAAATAATAATGGGTGGTGTTGGCGGTTCTTCTTCGTCAACAACAATGGCAGCGTTAATGTTAAAATCCACCAGTGCATCCACTATTCCCAATCTCAATTCAATGTCCAATTCCAACCAGCTAAATCCCCCCACACCCAGTAAACAACAGAGTGATGAAATACTAAGCACTTTACTGCGTATGAATAATTTCGATTCAATATCGAGCATAAAAGATGAATCGCTAGACATTGACCTCTCAGCGTGTGTAACCATTAGCGCCGATCCTTCCGGCACCATTGGAGGCAATAGTTTGTCATCGTCCGACTTTTGGAGAGTGTTGGATGAAAGTGCCCAGACCTCTCAGTTAGATGTAAGTAATGGCAGTGTTGGCAATGGGGTAGTAGGTGGTGTTGGTGGCGGTAGCTGTAATACAAGCCGAGAGTCATTACAGGCCTCACCATCAGCCTCGAGTAATGGTAATTCCTTGCCGGCAAATGATAAGAATGAATTGAAGGTCGTGGTTAAGAAGGAACAAACCGATTTTAGTGGGACTTTCCTCAAACCTTCCACTGGCATTTCATTTTCACCATTAAAACGTAGCATTAAGCCTCTGCAGGCGGAGCAACATATACGCAAAGAAAAGTCTCCCACCCGTTTGGTCAAAGCGGAAACGGGTCCTCCTTCCTTAGCACCCATTATGCGTATACATCAAACTTTTATTAAACCACAGGTAGAATTACCAAAGTTAAATAACGGTTCTATAGCCAACACGCAAACAGTGCAACTgcacaacaacaactgcaaacAACAAAAAGAGTTAATGTTGGCAAATAACCAGCCACCTCCCCTCGCAGCACTAGATACACCTATAAATAAGGAAAGTGCAGCAGTGAAACCCTTTGTTTTACCCGAACCGTTGTATAAATGTCTGGATTGTGAAAATCTTATATTCCGCAGTCCCGACCTAAATAAACACACCAATCATCGTTTAATTTACAAATGCCCCGATTGTGAGAGAGAATTCGATGTCGAGACTTCGTTAAAGAAACATTTGAAAACACATCGTCCTATTGATGCACGAAAGGATGCTTGGAAAAAGTGTCCCGATTGTGGAAAGTGCCTTAAACTTGGAAGCATGTGGATGCATCGCAAAATTCATACCGAAAATAAGAAATACGGCTGTGAGATATGTGGACAGAAATTTGTACAGAAGATAAACTTAACACATCACCAACGCATACATACCTCAGAAAAACCATATGAATGTTCCGAATGCCAAAAACGTTTTCAAGAGCGCAGTCATCTGCAACGGCATCAAAAATACCACGCACAGACACGTTCGTATCGCTGTGAGAAGTGTGGCAAAATGTACAAAACCGAACGTTGTCTCAAGGTACACAATTTAGTGCATTTGGAACAAAGGCCATTTGCTTGCACCGTCTGCGATAAATCCTTCATTTCGAATTCCAAACTTAAGCAGCATTCGAATATACACACCGGTGAGAGGCCATTCAAATGTAACTATTGTCCCAGAGATTTTACCAACTTTCCCAATTGGCTCAAACACACCAGACGTCGTCATAAAGTCGATCACAAAACCGGTGAAATGTTGGAGAATATACCATCATATTGTTCGAAAAAATCAACACGTACACCAAAGGAAAAGAAAACCAACGAAGTTAAAACAACGGCTGGAGCCTCAGcaaagaacaacaacagcaacaattccTCGGCAACGACAACAAATCAAAACCCCATTGATCTCAAAAAAATGGAAACAAACGATCTACAACAgcaacatcagcaacaacagAAGATATTAACAACATTTTCTACTGCAataacaaccacaacaacatcGTCTCATTATACAGCACCCACTACAGTCTTTACTACGATTACCCTGGCAAAACCGCTATTAACTGTAACTAGTGTGAGTAATAACCAGCCCAGCTCCATAAATGGACCGCCACCATTGGCTAAAGTTCCAGCTAAACgtaaaaagaaacaaactcCTGCAGTGTTAAGTCAAATAGCAAAAACAGACTTCGACAGCTCAATAGTAACGACATCTGCAACAACAACGTCAACATCCAATTTCTTGATATCCTCAGCTTCTCTACATGCCAATTTGCCAGTTGTCACCACAAATTGTGGTAGTGGCCCACCTCCGCTAGCCTTGGTGTACAATAATAAACCCATAAATGTAATCAGTACAACATTGTCAAACACTAATACCACCAATACGACTTTAAAAACAACGCAGCATCAACAGCAGTCATCtaagcaacaacaaccaacAAAAGTTGAAAAGGTTAAAAGAGAAAGAAAACAACCAATGCCAAAGCAAGTTCAACAAGTCCCACCACCCTTGATTattaaaaaggaatttataGAGCCAAGTACGGAAATAAGCATAGCATCccatgaacaacaacaacaacagcagcagcaactgcGTTTGCAACAAtcgcaacagcaacaacaacaacaaaccaaaGTATCATTTACCGATTTACATTGCTTAAGTATTACCTCAGCTGAGGAATTGATAATGGAACAGGCTTTGGAAATGGAAGAATGTGGCCTATACAAAGCCTCCTTACCGACCAATGTTCATGATCATCatgttatgtcgaatttcgccGACACAGATAACGCTATATCATCCGATTCAATGGCcgatttacattttaaaatcaaagagGAGCATCATGATAtggaattgaaattaaaaactgaagaatttgATTCGATTAAAAAACAATCGATATGTTCATCATAG
Protein Sequence: MKEEAETSSKLPPKIIMGGVGGSSSSTTMAALMLKSTSASTIPNLNSMSNSNQLNPPTPSKQQSDEILSTLLRMNNFDSISSIKDESLDIDLSACVTISADPSGTIGGNSLSSSDFWRVLDESAQTSQLDVSNGSVGNGVVGGVGGGSCNTSRESLQASPSASSNGNSLPANDKNELKVVVKKEQTDFSGTFLKPSTGISFSPLKRSIKPLQAEQHIRKEKSPTRLVKAETGPPSLAPIMRIHQTFIKPQVELPKLNNGSIANTQTVQLHNNNCKQQKELMLANNQPPPLAALDTPINKESAAVKPFVLPEPLYKCLDCENLIFRSPDLNKHTNHRLIYKCPDCEREFDVETSLKKHLKTHRPIDARKDAWKKCPDCGKCLKLGSMWMHRKIHTENKKYGCEICGQKFVQKINLTHHQRIHTSEKPYECSECQKRFQERSHLQRHQKYHAQTRSYRCEKCGKMYKTERCLKVHNLVHLEQRPFACTVCDKSFISNSKLKQHSNIHTGERPFKCNYCPRDFTNFPNWLKHTRRRHKVDHKTGEMLENIPSYCSKKSTRTPKEKKTNEVKTTAGASAKNNNSNNSSATTTNQNPIDLKKMETNDLQQQHQQQQKILTTFSTAITTTTTSSHYTAPTTVFTTITLAKPLLTVTSVSNNQPSSINGPPPLAKVPAKRKKKQTPAVLSQIAKTDFDSSIVTTSATTTSTSNFLISSASLHANLPVVTTNCGSGPPPLALVYNNKPINVISTTLSNTNTTNTTLKTTQHQQQSSKQQQPTKVEKVKRERKQPMPKQVQQVPPPLIIKKEFIEPSTEISIASHEQQQQQQQQLRLQQSQQQQQQQTKVSFTDLHCLSITSAEELIMEQALEMEECGLYKASLPTNVHDHHVMSNFADTDNAISSDSMADLHFKIKEEHHDMELKLKTEEFDSIKKQSICSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00045597;
90% Identity: iTF_00921621;
80% Identity: -