Lser001086.1
Basic Information
- Insect
- Lucilia sericata
- Gene Symbol
- -
- Assembly
- GCA_015586225.1
- Location
- NW:89570-102125[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0037 0.17 12.1 0.3 1 23 372 395 372 395 0.95 2 12 1.1e-05 0.0005 20.1 1.4 1 23 400 423 400 423 0.96 3 12 5.8e-06 0.00027 20.9 3.7 1 23 428 450 428 450 0.97 4 12 0.061 2.9 8.2 5.2 2 23 457 478 456 478 0.95 5 12 0.0013 0.063 13.5 2.8 2 23 486 508 486 508 0.95 6 12 0.023 1.1 9.6 1.4 1 23 514 537 514 537 0.95 7 12 0.0058 0.27 11.5 2.4 2 23 548 570 547 570 0.94 8 12 2.3e-07 1.1e-05 25.3 0.7 1 23 598 620 598 620 0.98 9 12 6e-06 0.00028 20.9 2.3 1 23 627 649 627 649 0.96 10 12 0.0002 0.0094 16.1 0.2 3 23 657 677 656 677 0.97 11 12 0.009 0.42 10.9 1.3 1 23 684 706 684 706 0.98 12 12 0.00028 0.013 15.6 3.3 1 23 712 735 712 735 0.98
Sequence Information
- Coding Sequence
- ATGGAGACTTGTCGTACTTGTGCCAAATGTGATTTTGATAATGAAACCCAATGGTTTGATTTATTTAATGCTCCTCGTTGGCAACTTGAAACGGAACGCATACATTTGGTGTTAAGTACTTGGAAAATTAagATTTCGTGTAACGATGGTTTGCCACAAAAAATCTGCACCgattgtttttcaaaattttgcacagtcTCCTCATTTCGCCTACAATGCCTGGAGGCACAAACTATATTAAGCAATATATTCGATAAAATCGATACACAAAGTATACAGGATGAAGAAGTTTTCGAGGGATTCGCTAATGAACAGGATAATGATGTAAAAACAGCAACACAGCCGATAGGAGCagttgcagcagcagcagctgcaGCGACATCAGCAGCAGAAGTACTAACAGTGCACTTAAAGTCAATTGAGCACACATTAGAGACAACAACTGAAAAGAGCATAACAAGCAGTAATAGTAGCAGcaataacaagaacaacaataacaacaatgAAAATATCTCCACATTAAGTGAAATCTTAAATCTAAATCCTAACGACAACACCGAGGTTTCATTTAGAACCATAACAAAATTATCAAACACTGCCGTTTTAGAAAACGAAAatataaaaccaaatttttatcAGAGTGTAGTCGAAGAAGAAGACGAAGATATTAATAATAACACCAACTATAACAATAATATCAGCAATAATACTCCACATGAGGGAGAAGAAGATGTCTCTAGCAATAATCTTTcaactaatttaaataataacgaAACAACTATACTACCAGAAAATACCAACGATTTAGATGAAAATGATCTTATAGAAGAACTAATCGAAGAACTTGATATTATAGAAGAAATCACCGAAGAAGAACATCAAGCGGAAGTGGAAGAGGAGGAAGAGGAGCTGAATGATTTGGAAAATATACCAACTACTACAAATATCACTATGACCCTGGACCAAGAAGATGATGATCCTTTAGAGAACGATTTAAAAATAACCTTTGAATGTAAATACTGttataaatggaaaaataatgctacggaaaattttctaaccCAGCAAGATCTATTGGCTCATATAACCAAACTACACAGTTCAGATCAACCCTATAATTGTCCCTATTGCCAGCAAATGTTTATGGATGCCGCTTCACGGACCACTCACCTAAAGGATGAACACAGTCAAAAGGTTTACGAATGTCAAACGTGTGGTAAAAAATATGccgataaatttaatttaaaaaatcatgtCGAAAAATATCACAGTGGTACCGATTTCGATTGTACCCTATGCGGTAAGAGTTTTTGTTCGagtaaaagtttaaattatcACATGAAATGGCACAATCCGGAAGAGCAATTAAAGTGTAGTTACTGTGATCGTTTGTTTATCAATCAGCGACATTTGAAGTGTCACGAGGAGACTCATACGGGCTATCGGAGTCAGGAGGTTTGTTCGTTTTGTGGGAAAAATTTCTTTCATTTGAAAACACTTAGATGGCATATCTATCGACAACATGGTGGTGAAAAGCCCTACAAATGTGCCCGATGTACAGAAGTTTTCACATCATATTTCGAAAAACGTCTACACATGCTCGAATATCATTTGGATAATCTTACGTTGATCGAAAAAACCGAATGTATGCTGTGTCACAAACGTTACGATCACGAACAGGAACTAAAGGATCATATGATGGAAGATCACAAGGAAAATAAGGGAGCCGTTAAAATCTCCAATAATAAACGTGTTATAATGAATAAGAAACCAAAAAGCTTTACGGGTATATTTCAATGTGAAAAATGTGATAAACGTTTCAATATGAAATCAGCTTTAGAAAGACACATGGCTGTGCACTCCACGGAGGGACGACCTCATGCCTGCCCGCAATGTCCTAAACGCTTTAAGCGTTCGCAAGATATGAAGTGGCATTTGAAAACACATTCCTCCGAAAAGCCCAATATCTGTGATGTGTGCGGCAAGGGTTTCGCTTTGAAATATGTCTTAACGCAACATCGTCGAAGTCATGAAGttttaGAAAAGAACTTTACTTGCACCACCTGCGGCCGATCATATCTCTTCGAAAAGTCTTTGCGTTTACACGAACGTATACACAGTGGTAAAACCTATTACAAATGTGATTTATGCAGTGAAAGTTTTGTTACACATATTAAGTTTAAATGGCATATGAAAAAAATGCACGACGAGGAAGAAGTGGCTGCTGCTACTAATTTAAAtcctaataataaaaataaaactaacatTGAGCTGCCATTGGACGATTTGGTCAATATTGTGATTACTtag
- Protein Sequence
- METCRTCAKCDFDNETQWFDLFNAPRWQLETERIHLVLSTWKIKISCNDGLPQKICTDCFSKFCTVSSFRLQCLEAQTILSNIFDKIDTQSIQDEEVFEGFANEQDNDVKTATQPIGAVAAAAAAATSAAEVLTVHLKSIEHTLETTTEKSITSSNSSSNNKNNNNNNENISTLSEILNLNPNDNTEVSFRTITKLSNTAVLENENIKPNFYQSVVEEEDEDINNNTNYNNNISNNTPHEGEEDVSSNNLSTNLNNNETTILPENTNDLDENDLIEELIEELDIIEEITEEEHQAEVEEEEEELNDLENIPTTTNITMTLDQEDDDPLENDLKITFECKYCYKWKNNATENFLTQQDLLAHITKLHSSDQPYNCPYCQQMFMDAASRTTHLKDEHSQKVYECQTCGKKYADKFNLKNHVEKYHSGTDFDCTLCGKSFCSSKSLNYHMKWHNPEEQLKCSYCDRLFINQRHLKCHEETHTGYRSQEVCSFCGKNFFHLKTLRWHIYRQHGGEKPYKCARCTEVFTSYFEKRLHMLEYHLDNLTLIEKTECMLCHKRYDHEQELKDHMMEDHKENKGAVKISNNKRVIMNKKPKSFTGIFQCEKCDKRFNMKSALERHMAVHSTEGRPHACPQCPKRFKRSQDMKWHLKTHSSEKPNICDVCGKGFALKYVLTQHRRSHEVLEKNFTCTTCGRSYLFEKSLRLHERIHSGKTYYKCDLCSESFVTHIKFKWHMKKMHDEEEVAAATNLNPNNKNKTNIELPLDDLVNIVIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00045511;
- 90% Identity
- -
- 80% Identity
- -